mRNA_P-fluviatile_contig14.2161.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2161.1
Unique NamemRNA_P-fluviatile_contig14.2161.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2161.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 4.870e-103
Identity = 177/290 (61.03%), Postives = 202/290 (69.66%), Query Frame = 1 
Query:    7 LLTPELRKTCVALWVEGDGNCFWRSCARVLWGTDVYWRQLKLVVLAWSSVNVGALVGEDGPLFRNGQ--HYDNDVHGRHVYRGRGDKRDYERDNYASMLQEQVAKFCQDRKWGGDLTGILTTERLGVVLKMASPVDMRARKRAD---AGLDKVKNYSGRYGLDHFGDQRQSLVRVPSGGRKEITVRGASGEPDIVVDEIAVALVGYSEARVGDWGLSDIPVISADTPQPQLAHYAAIVSTDPDVHVRRPLRMDIVGPSLWTKFDQSHAEQAAKEEAEWAERQARRAAQRV 861
            +LTPELRKT VALWVEGDGNCFWRS A+ LWGTD YWRQLKL VLAWS+VNV ALVGE G LF      HYD+++H +H+YRG   K D+  D+ ASML E +AKF  +R+WGG L G+L TER G+VLKM  P DMRAR RAD   A      +Y G    D FGD R S  +VP+ GRKEI +RG S E DIVV+EIA+ +  Y  A VGD  LSDIPVI ADT    L H+AAIV  DPDVHVRRP  M   GP L  KFD+S AE+ AKEEAEWAERQAR   QR 
Sbjct:   93 ILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPDGKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGG-SEDEFGDHRYSFTKVPTAGRKEIILRGVSDEEDIVVEEIAITMASYDSAVVGDGSLSDIPVIEADTNLNHLNHFAAIVCADPDVHVRRPFPMSKAGPPLHAKFDKSDAERRAKEEAEWAERQARXXXQRA 381
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE4.870e-10361.03SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1424831..1425919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size864
Cds size864
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.5741186-CDS-P-fluviatile_contig14:1424830..14256101622815613.5741186-CDS-P-fluviatile_contig14:1424830..1425610Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1424831..1425610 +
1693562437.9828718-CDS-P-fluviatile_contig14:1424830..14256101693562437.9828718-CDS-P-fluviatile_contig14:1424830..1425610Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1424831..1425610 +
1622815613.585472-CDS-P-fluviatile_contig14:1425835..14259191622815613.585472-CDS-P-fluviatile_contig14:1425835..1425919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1425836..1425919 +
1693562437.9928627-CDS-P-fluviatile_contig14:1425835..14259191693562437.9928627-CDS-P-fluviatile_contig14:1425835..1425919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1425836..1425919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2161.1prot_P-fluviatile_contig14.2161.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1424831..1425919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2161.1

>prot_P-fluviatile_contig14.2161.1 ID=prot_P-fluviatile_contig14.2161.1|Name=mRNA_P-fluviatile_contig14.2161.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=288bp
MTLLTPELRKTCVALWVEGDGNCFWRSCARVLWGTDVYWRQLKLVVLAWS
SVNVGALVGEDGPLFRNGQHYDNDVHGRHVYRGRGDKRDYERDNYASMLQ
EQVAKFCQDRKWGGDLTGILTTERLGVVLKMASPVDMRARKRADAGLDKV
KNYSGRYGLDHFGDQRQSLVRVPSGGRKEITVRGASGEPDIVVDEIAVAL
VGYSEARVGDWGLSDIPVISADTPQPQLAHYAAIVSTDPDVHVRRPLRMD
IVGPSLWTKFDQSHAEQAAKEEAEWAERQARRAAQRVE
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mRNA from alignment at P-fluviatile_contig14:1424831..1425919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2161.1 ID=mRNA_P-fluviatile_contig14.2161.1|Name=mRNA_P-fluviatile_contig14.2161.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1089bp|location=Sequence derived from alignment at P-fluviatile_contig14:1424831..1425919+ (Porterinema fluviatile SAG_2381)
ATGACGCTCCTCACACCGGAATTGCGGAAAACGTGTGTGGCGTTGTGGGT
CGAGGGCGACGGCAATTGCTTTTGGCGTTCTTGCGCACGGGTGCTGTGGG
GTACAGATGTATACTGGCGCCAGCTCAAGCTCGTAGTACTTGCGTGGAGT
TCAGTTAACGTGGGGGCCCTGGTAGGGGAGGATGGGCCCCTTTTTCGAAA
CGGCCAGCATTACGACAACGATGTTCACGGCCGCCACGTGTACAGGGGCC
GCGGTGACAAACGTGACTACGAGCGTGATAACTACGCGTCGATGCTCCAG
GAGCAAGTCGCGAAGTTTTGCCAAGACAGAAAGTGGGGTGGGGACCTTAC
CGGTATTTTGACCACTGAAAGGCTCGGCGTAGTGTTGAAGATGGCATCTC
CCGTTGACATGCGGGCTAGGAAGAGGGCTGACGCAGGGTTAGACAAGGTC
AAAAACTATTCGGGTAGGTACGGTCTCGACCACTTCGGGGACCAACGCCA
GTCGTTGGTTAGGGTACCGAGTGGGGGGCGTAAGGAAATTACCGTACGTG
GGGCAAGCGGTGAGCCAGACATTGTGGTCGACGAGATAGCCGTCGCTTTG
GTGGGATACAGCGAAGCTAGGGTCGGAGATTGGGGCCTCTCTGACATCCC
CGTGATATCGGCGGACACACCTCAGCCTCAGTTGGCACACTACGCGGCGA
TAGTGAGCACCGATCCGGACGTTCACGTCAGGCGCCCACTACGGATGGAC
ATAGTAGGCCCGTCGCTATGGACGAAGTTTGTGAGTGACCTTTTCAATGT
CTGCGCCCCAAGAGTCATTGCTGTAGTCTCGTCTGTTTGTTATCACATGA
ACAAAATATACTCCGTACGTATGTATGCTCCCACTGTTGCTTGAAGCTAC
TAAATTATTAGCGTAGATCAGGCGTAATCTGCAACCGGTTAAAATGTAGA
TTGGTGACCTGTGAGCTGTTTTTTTTTTCGGGGGGGCGGTGTTCATTGCC
TGCAGGACCAATCACATGCGGAGCAAGCTGCCAAGGAGGAAGCTGAGTGG
GCGGAGAGGCAAGCACGGAGGGCGGCACAGAGGGTGGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1424831..1425919+

>mRNA_P-fluviatile_contig14.2161.1 ID=mRNA_P-fluviatile_contig14.2161.1|Name=mRNA_P-fluviatile_contig14.2161.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1728bp|location=Sequence derived from alignment at P-fluviatile_contig14:1424831..1425919+ (Porterinema fluviatile SAG_2381)
ATGACGCTCCTCACACCGGAATTGCGGAAAACGTGTGTGGCGTTGTGGGT
CGAGGGCGACGGCAATTGCTTTTGGCGTTCTTGCGCACGGGTGCTGTGGG
GTACAGATGTATACTGGCGCCAGCTCAAGCTCGTAGTACTTGCGTGGAGT
TCAGTTAACGTGGGGGCCCTGGTAGGGGAGGATGGGCCCCTTTTTCGAAA
CGGCCAGCATTACGACAACGATGTTCACGGCCGCCACGTGTACAGGGGCC
GCGGTGACAAACGTGACTACGAGCGTGATAACTACGCGTCGATGCTCCAG
GAGCAAGTCGCGAAGTTTTGCCAAGACAGAAAGTGGGGTGGGGACCTTAC
CGGTATTTTGACCACTGAAAGGCTCGGCGTAGTGTTGAAGATGGCATCTC
CCGTTGACATGCGGGCTAGGAAGAGGGCTGACGCAGGGTTAGACAAGGTC
AAAAACTATTCGGGTAGGTACGGTCTCGACCACTTCGGGGACCAACGCCA
GTCGTTGGTTAGGGTACCGAGTGGGGGGCGTAAGGAAATTACCGTACGTG
GGGCAAGCGGTGAGCCAGACATTGTGGTCGACGAGATAGCCGTCGCTTTG
GTGGGATACAGCGAAGCTAGGGTCGGAGATTGGGGCCTCTCTGACATCCC
CGTGATATCGGCGGACACACCTCAGCCTCAGTTGGCACACTACGCGGCGA
TAGTGAGCACCGATCCGGACGTTCACGTCAGGCGCCCACTACGGATGGAC
ATAGTAGGCCCGTCGCTATGGACGAAGTTTATGACGCTCCTCACACCGGA
ATTGCGGAAAACGTGTGTGGCGTTGTGGGTCGAGGGCGACGGCAATTGCT
TTTGGCGTTCTTGCGCACGGGTGCTGTGGGGTACAGATGTATACTGGCGC
CAGCTCAAGCTCGTAGTACTTGCGTGGAGTTCAGTTAACGTGGGGGCCCT
GGTAGGGGAGGATGGGCCCCTTTTTCGAAACGGCCAGCATTACGACAACG
ATGTTCACGGCCGCCACGTGTACAGGGGCCGCGGTGACAAACGTGACTAC
GAGCGTGATAACTACGCGTCGATGCTCCAGGAGCAAGTCGCGAAGTTTTG
CCAAGACAGAAAGTGGGGTGGGGACCTTACCGGTATTTTGACCACTGAAA
GGCTCGGCGTAGTGTTGAAGATGGCATCTCCCGTTGACATGCGGGCTAGG
AAGAGGGCTGACGCAGGGTTAGACAAGGTCAAAAACTATTCGGGTAGGTA
CGGTCTCGACCACTTCGGGGACCAACGCCAGTCGTTGGTTAGGGTACCGA
GTGGGGGGCGTAAGGAAATTACCGTACGTGGGGCAAGCGGTGAGCCAGAC
ATTGTGGTCGACGAGATAGCCGTCGCTTTGGTGGGATACAGCGAAGCTAG
GGTCGGAGATTGGGGCCTCTCTGACATCCCCGTGATATCGGCGGACACAC
CTCAGCCTCAGTTGGCACACTACGCGGCGATAGTGAGCACCGATCCGGAC
GTTCACGTCAGGCGCCCACTACGGATGGACATAGTAGGCCCGTCGCTATG
GACGAAGTTTGACCAATCACATGCGGAGCAAGCTGCCAAGGAGGAAGCTG
AGTGGGCGGAGAGGCAAGCACGGAGGGCGGCACAGAGGGTGGAAGACCAA
TCACATGCGGAGCAAGCTGCCAAGGAGGAAGCTGAGTGGGCGGAGAGGCA
AGCACGGAGGGCGGCACAGAGGGTGGAA
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