mRNA_P-fluviatile_contig14.2115.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2115.1
Unique NamemRNA_P-fluviatile_contig14.2115.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2115.1 vs. uniprot
Match: A0A6H5JZJ1_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ1_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 7.810e-72
Identity = 149/239 (62.34%), Postives = 168/239 (70.29%), Query Frame = 3 
Query:  231 HHEQHTDNRQTSHDNPSAAPTRTMSAASWGVAYLLQRPGSLGWQRHNAPHVVFLHE-DSFLEVTEPATSRLQERVDLARGET----EVSFVAAADGQNIIRFSLTEGQRVRKFALVAENGRDATELCQALDRQGRGERAGVAVRGMEDLPDAVFLQGQDQQTAQALEAGIPDLSRPEVQAYIVRLLFQESFHQFVVDLSEMFSQVQTHLPVPLSAWAPTPRQTPADTPPTSAAAAPIRG 932
            HH Q     Q   DN   A    +S  SWGV YLLQ     GWQRH +PHV  L   ++ L+VTE ATSRLQERVDLA G T    EV+FVAAA  QNI+RF+L  G  VRKFAL+AE GR A ELCQALDR+G      V+VRGMEDLPDAVFL+G D++TAQALEAGIP+LSRPEVQAYIVRLLFQ+SFH+FV DLSEMFS VQTHLPVP S       +T A  PP +AAA P  G
Sbjct:   11 HHPQPQREHQPGQDNQHVASPSAVS--SWGVTYLLQS-AKRGWQRHKSPHVASLDAVNNCLDVTETATSRLQERVDLAEGATVGAIEVAFVAAAAAQNIVRFTLP-GHPVRKFALIAECGRSAAELCQALDRKG------VSVRGMEDLPDAVFLRGGDRRTAQALEAGIPNLSRPEVQAYIVRLLFQDSFHEFVSDLSEMFSHVQTHLPVPTS------MRTSASDPPAAAAAGPSHG 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZJ1_9PHAE7.810e-7262.34Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1085974..1090200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size936
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2115.1prot_P-fluviatile_contig14.2115.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1086192..1090200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.914833-UTR-P-fluviatile_contig14:1085973..10861911622815607.914833-UTR-P-fluviatile_contig14:1085973..1086191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1085974..1086191 +
1693562399.1531785-UTR-P-fluviatile_contig14:1085973..10861911693562399.1531785-UTR-P-fluviatile_contig14:1085973..1086191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1085974..1086191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.9310508-CDS-P-fluviatile_contig14:1086191..10864161622815607.9310508-CDS-P-fluviatile_contig14:1086191..1086416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1086192..1086416 +
1693562399.1620414-CDS-P-fluviatile_contig14:1086191..10864161693562399.1620414-CDS-P-fluviatile_contig14:1086191..1086416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1086192..1086416 +
1622815607.9417288-CDS-P-fluviatile_contig14:1087561..10876351622815607.9417288-CDS-P-fluviatile_contig14:1087561..1087635Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1087562..1087635 +
1693562399.1792421-CDS-P-fluviatile_contig14:1087561..10876351693562399.1792421-CDS-P-fluviatile_contig14:1087561..1087635Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1087562..1087635 +
1622815607.9546204-CDS-P-fluviatile_contig14:1088241..10883381622815607.9546204-CDS-P-fluviatile_contig14:1088241..1088338Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1088242..1088338 +
1693562399.1934316-CDS-P-fluviatile_contig14:1088241..10883381693562399.1934316-CDS-P-fluviatile_contig14:1088241..1088338Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1088242..1088338 +
1622815607.968921-CDS-P-fluviatile_contig14:1089103..10892551622815607.968921-CDS-P-fluviatile_contig14:1089103..1089255Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1089104..1089255 +
1693562399.20639-CDS-P-fluviatile_contig14:1089103..10892551693562399.20639-CDS-P-fluviatile_contig14:1089103..1089255Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1089104..1089255 +
1622815607.982719-CDS-P-fluviatile_contig14:1090031..10902001622815607.982719-CDS-P-fluviatile_contig14:1090031..1090200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1090032..1090200 +
1693562399.5904617-CDS-P-fluviatile_contig14:1090031..10902001693562399.5904617-CDS-P-fluviatile_contig14:1090031..1090200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1090032..1090200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2115.1

>prot_P-fluviatile_contig14.2115.1 ID=prot_P-fluviatile_contig14.2115.1|Name=mRNA_P-fluviatile_contig14.2115.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=239bp
MRENHHEQHTDNRQTSHDNPSAAPTRTMSAASWGVAYLLQRPGSLGWQRH
NAPHVVFLHEDSFLEVTEPATSRLQERVDLARGETEVSFVAAADGQNIIR
FSLTEGQRVRKFALVAENGRDATELCQALDRQGRGERAGVAVRGMEDLPD
AVFLQGQDQQTAQALEAGIPDLSRPEVQAYIVRLLFQESFHQFVVDLSEM
FSQVQTHLPVPLSAWAPTPRQTPADTPPTSAAAAPIRGE
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mRNA from alignment at P-fluviatile_contig14:1085974..1090200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2115.1 ID=mRNA_P-fluviatile_contig14.2115.1|Name=mRNA_P-fluviatile_contig14.2115.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4227bp|location=Sequence derived from alignment at P-fluviatile_contig14:1085974..1090200+ (Porterinema fluviatile SAG_2381)
GGATAACCAATCGAGATCCAAACGCAACTTCCCCCGCACGGCGATTGTCT
GTCGTGTAGTGCTATTCTTCATTCCGCAAGTTAAAGGCCGTTTTCTCCAT
TTCTCTGTCTCGTTTACCAAAACCCGGACACACAATCTTCTGCGCATCGG
ACGCGTGCCGACTCAGGGAGAGTCTCGACGTGGCGGCTCCATCTCGCCGC
GACGATGATGCTCATCGCATGCGGGAGAATCACCACGAGCAGCACACGGA
CAACCGACAAACAAGCCACGACAATCCGTCAGCAGCACCCACAAGGACCA
TGTCTGCCGCCTCTTGGGGGGTGGCTTACCTCTTACAACGGCCGGGCAGT
CTTGGGTGGCAGAGGCACAACGCTCCGCATGTCGTGTTTCTGCACGAAGA
CAGCTTCCTCGAGGTCACGGAACCTGCAACTTCAAGGCTTCAGGTGCAGT
GCGTTGCAGAGACAGGTTGTTGCTCCTCTCTTTGTTCCTCTGTCTCCCAC
GCTCCCCTCGCTGCCTTCGTCGCTCCTTTCCTCCCCGGGGTACAGTAGTC
ATGGGGGATGACAACCTATGCGCTGTGATCGTTGGTTTGCACTTCAGCTC
TTCAAAAGCAAGTCGTCGTCATGAGGGTCTATATCCGTCAGATGGTCTTC
TCCACTAGATCACTCAGGCAGTGCTGAGTGGTCTAGTGGACAAGACCATC
TAACGGAGAAAATATGCACTTGTGGGATCCGATCCCATCTCGCATCAAGC
AGTGATCGCCGGGCGGGCCACTCCCCCCCTCGCCGACGCTGCTGCTAGTG
TTGGCGCTGCCATCTGCCTCTCCTCGCCAACACTGCTGCTTGTGTACATT
GTTCACTCCGCTTCGTTGTGTCTCGACTCAGCACTCATATTCATTCGAGC
CTTTCTTGCCGTCATCCACACACTCTGGCACTCCAGGGTCTCACATAAAA
AGCCAAATCACGTGGTGAGCCTGGGATTCTAACCCATCTCTCATTCAAAA
GGAGGCTGTAGAGTCAAGCCAAATGGACAAATGAAAGGGCCACCATGCGG
GGCGCATCAAGGCGCAGTTCGATCTTTCGCTGCCCTAGTCAACGCCGGCA
CTTACCCTCCTTTCGCGGGGTAACGAAGATCTTAACATCCCACACGAGGC
CAAATACGGTGCTTGACTTGTGGTTTGCACCACCGCATCCGTGATGAGTG
CTGTGTGTGGAAATGCTCCTCTGACTTGCTTGGGACTCACGACAACACAG
AACGTATGGCCGAACCGCCGCGGGAAAGATACACATTCACGTTCAGGTGG
GGGCCATACATGCAACAGGGCGGAGCTGAGCAAAATAAGTGGATCGCCGC
GCCCGATTACTGCTGCTCCTGCTGTAGCTTGGGCTGCTATTCTGATGTAT
GCCTCGTTTTCCATCTACAGCTATCATACTTTTGCCGCTCGAGATCTCCG
CCGCATGGTGTCTGGGTAGTTGACCGCGAAGCCGTCACCGGGCGTGCTCT
CTCACTGCCTGCCCGCCCTGTTGGGGCCTCCGAAAAACGCCCCGGTTCGC
TCACACACGATATGGCATGGCATGGCATGGCATGACAGGAACGAGTGGAC
CTGGCGAGGGGCGAAACCGAGGTGTCCTTCGTCGCCGCGGCAGATGGACA
GAACATCATCAGGCAAAAGATCGGTATTGTAGGGTTGAATGTTGATCGGT
GGGTGATGTAGGGTGGGAGAGGAGGGAGAAGAAGAGAGGATTGGAGGGGG
GAGGCAGGGTGGAGAGAGAGGGAGGGAGAGAGAGGGCGGGAGAGAATGGC
AGCGAAAGAGATCGAGATGAATGGGGGACCAGAGGTCTCTGTAAATACAG
GACAGTAACTGCGTAGAAGCAAGTTCAAGAGGAGGGGAGGGAGATCGGCA
TGTCCGACGACACAGCAAAGGGTCGCGTATGATTCGGCGTGACTGGAACT
TGAACGCGACCTCACGCCCCCTTTTCTGATCAGAATCTGCGGCACCATTC
CGTTCGCCGCTTCCCGCGCTCCTCCCTTGTCGTTCACGGACCCGCAGTCT
TACTGGACAAAAAAGGTGTTGCCTGGAATGAGCCGAGAACGCTTCCCAAT
CGTAACGGGGGTGTTGACTTGGTGGTGTAAACCGCGATTGCCCTTCGGCC
ATCTCGTCTTGTGGGTTCGCATACCCCTCCCAGAACCCCCCTCGCTAGCT
GCCGGTTTAGAGCAGGACCAGGTACTTTGTCTTTAACCTGCTGGCTGCTC
CCGGCCGTGCGCGCGCAGGTTTAGCCTGACGGAGGGGCAGAGGGTGCGGA
AATTCGCTCTGGTCGCTGAGAATGGGCGAGACGCTACCGAGCTGTGTCAG
GCGCTGGATCGTCAAGGTGATCACGATGACTAGGCTGCAATAATCGAACG
TGGACGGCAGCTGCACTAGGGTCATAACAACAAAATAGCGAGTGTGACAT
GAACAGCAGCGGCAGTAGCAGCAGCAGCAGAAGCGCCGGCAAGTATCGTG
CCATGGTGCCGCTTGTGTCCAATGCTTGCTTCACAATAGCCGCCTATCGC
ATAGCATATGCAGCTGCTGACGAGGAATGGTTTAATTGTGCTGGCATCTT
CCCGGCGAAACAAAGTCTAATGTTGGGATTAATTCTCGGTTCTCAAAAGC
CCGCAAGTACATTCTTCGCCTTCACGGTCAGATAAGCCGGAAGCTTCTTA
CCTCGGTCGGTTGGACACAATTTCATTCGGTCTCGCGGCACAAGAGTTCA
TGATCACTGCGTAGCCGGCTCACGTGAGACGACACACGGTATCGCGTGGA
TGAGACCCATGCACGTCTAGCAAAGGTGCAGGGTTAAAAAATGCACCAAC
GCTCGCATCCTTGCGACCGATACACGACGCGGATGTACGGCGTGGCCGAA
CGCAACAACCTATTTGGCAGAGCAACCCGACTTCGCGAAGAAAATCGACC
CCTCTCCTCGAGTACAAGGCTCGGAAGGGTTCCACCGGCCACAAGCAAAC
GTTTCTTAGACCCTCGTGCCGCGTGCGTAGGGCTGAGCCTCAGTGAGCGC
AGATGTCGCCGCTATTAACGCCATCGCCACCGCCGCCGCGCTTGTTGTGC
CGCGATGTTTCGTTGTTCTGATCTTCTTCCGGCCGGGGCGAGAGAGCAGG
CGTCGCGGTGCGAGGGATGGAGGATCTCCCGGACGCGGTGTTCTTGCAGG
GGCAGGACCAGCAAACCGCCCAGGCCTTGGAAGCCGGTATACCCGACCTG
TCGCGACCGGAAGTTCAGGCGTACATCGTCAGGTGAAGCTTTCAAGCGGG
TCAAAGAGGAAACCACTGTACGCTTTTGTGTGTCTCTCTCTGTGCGGGGG
CTGGGGGAGGGATGGTAGCAGGGGAGGGAAGGTGAGGGGGAAAGTGAGAC
GGCGATCCACGATGATGCAGCTGGTGGTTGTTGAGCTTTGGACCTCGCAT
CCCGCCTACCATTTTTTCATGAGGTCGACACGCAGTACACCAAACGCGAA
TACGCCGAGGTGCATGTGCATCCGGAGATGGTAGGGGAGGTAGGTTCTCA
TGCATCCGCACAAGTCGGAAACGTTGATCGTATTTTTCCTTCGTTTCGGT
GCCGCGTTCTTGTTGCTCTGACTCCCCCCCGGGCGGCGAGAGAGCACGTG
CATTTAGGCACCGTAGTCAGGAAGTGAGAATCATCGAATTGTGCAACAGC
AGGGCATCATCGAGAAACAGAAAAGGGGGGAAATCATTTCCTGTTGAAGA
AGGATATCGATTATTTGAAGTTTAAGCACATTTCGCGATCTGTGCATCCG
TTGCGACACCGTTACAAACAAAGTCGTAGGTTTGTCAGCTCTGATGATGC
CCATTGTTCTACTTGTCCCGTCACGCGCGGTCACAGATTTCATTGAAGTC
GATTACACACCACGCCGTCCGCAAAGCTTGACATACCTCTTTCACTCGCT
CGCTCGCTCGCCATCGCTCTCTCTATCTCTCTCTCCTTCCCTTGCTCGCT
CCCTGCGGCTTGTGCATACTTTCGACACAAATTGAACCCCAATTCAAAAC
TCAACAAGACTTCTCTTCCAGGAATCCTTCCACCAGTTCGTGGTTGACCT
GAGTGAGATGTTCTCTCAAGTGCAGACTCATCTCCCGGTTCCGCTTTCGG
CGTGGGCGCCAACGCCGCGGCAAACGCCGGCCGATACGCCCCCAACAAGT
GCTGCTGCTGCTCCTATTCGTGGAGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1085974..1090200+

>mRNA_P-fluviatile_contig14.2115.1 ID=mRNA_P-fluviatile_contig14.2115.1|Name=mRNA_P-fluviatile_contig14.2115.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1434bp|location=Sequence derived from alignment at P-fluviatile_contig14:1085974..1090200+ (Porterinema fluviatile SAG_2381)
ATGCGGGAGAATCACCACGAGCAGCACACGGACAACCGACAAACAAGCCA
CGACAATCCGTCAGCAGCACCCACAAGGACCATGTCTGCCGCCTCTTGGG
GGGTGGCTTACCTCTTACAACGGCCGGGCAGTCTTGGGTGGCAGAGGCAC
AACGCTCCGCATGTCGTGTTTCTGCACGAAGACAGCTTCCTCGAGGTCAC
GGAACCTGCAACTTCAAGGCTTCAGATGCGGGAGAATCACCACGAGCAGC
ACACGGACAACCGACAAACAAGCCACGACAATCCGTCAGCAGCACCCACA
AGGACCATGTCTGCCGCCTCTTGGGGGGTGGCTTACCTCTTACAACGGCC
GGGCAGTCTTGGGTGGCAGAGGCACAACGCTCCGCATGTCGTGTTTCTGC
ACGAAGACAGCTTCCTCGAGGTCACGGAACCTGCAACTTCAAGGCTTCAG
GAACGAGTGGACCTGGCGAGGGGCGAAACCGAGGTGTCCTTCGTCGCCGC
GGCAGATGGACAGAACATCATCAGGAACGAGTGGACCTGGCGAGGGGCGA
AACCGAGGTGTCCTTCGTCGCCGCGGCAGATGGACAGAACATCATCAGGT
TTAGCCTGACGGAGGGGCAGAGGGTGCGGAAATTCGCTCTGGTCGCTGAG
AATGGGCGAGACGCTACCGAGCTGTGTCAGGCGCTGGATCGTCAAGTTTA
GCCTGACGGAGGGGCAGAGGGTGCGGAAATTCGCTCTGGTCGCTGAGAAT
GGGCGAGACGCTACCGAGCTGTGTCAGGCGCTGGATCGTCAAGGCCGGGG
CGAGAGAGCAGGCGTCGCGGTGCGAGGGATGGAGGATCTCCCGGACGCGG
TGTTCTTGCAGGGGCAGGACCAGCAAACCGCCCAGGCCTTGGAAGCCGGT
ATACCCGACCTGTCGCGACCGGAAGTTCAGGCGTACATCGTCAGGGCCGG
GGCGAGAGAGCAGGCGTCGCGGTGCGAGGGATGGAGGATCTCCCGGACGC
GGTGTTCTTGCAGGGGCAGGACCAGCAAACCGCCCAGGCCTTGGAAGCCG
GTATACCCGACCTGTCGCGACCGGAAGTTCAGGCGTACATCGTCAGACTT
CTCTTCCAGGAATCCTTCCACCAGTTCGTGGTTGACCTGAGTGAGATGTT
CTCTCAAGTGCAGACTCATCTCCCGGTTCCGCTTTCGGCGTGGGCGCCAA
CGCCGCGGCAAACGCCGGCCGATACGCCCCCAACAAGTGCTGCTGCTGCT
CCTATTCGTGGAGAAACTTCTCTTCCAGGAATCCTTCCACCAGTTCGTGG
TTGACCTGAGTGAGATGTTCTCTCAAGTGCAGACTCATCTCCCGGTTCCG
CTTTCGGCGTGGGCGCCAACGCCGCGGCAAACGCCGGCCGATACGCCCCC
AACAAGTGCTGCTGCTGCTCCTATTCGTGGAGAA
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