mRNA_P-fluviatile_contig14.2094.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 340 bits (873), Expect = 1.730e-113 Identity = 172/229 (75.11%), Postives = 192/229 (83.84%), Query Frame = 3
Query: 117 ALAFLRPSDAFVAPSASALSHAVGGSTSSARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGILEHIISRL 803
A + S AFVAP + SS R A++ + +M +D+ ASLPGAPFGMAAEGKYFDPAGLA+ QD ETIKKWREAE+KHGRVSMLAA+GILVSEVFHP FMGP YIGPAVEHAQQIATVYPLFWV S+ +IA+IEGQTIK+AWG+VSPVTGVGNLK +YYPGDLGFDPLGLAPKDG DFRLIQSQELDLGRYAMIGVLGMI QE VDG+GILEHI+SR+
Sbjct: 11 AATLIASSAAFVAP--------IAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 207 bits (526), Expect = 2.390e-61 Identity = 112/222 (50.45%), Postives = 150/222 (67.57%), Query Frame = 3
Query: 117 ALAFLRPSDAFVAPSASALSHAVGGSTSSARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGIL 782
A + S AFVAP A SA ++S+ +++M+ +D+ A+LPGAPFG +GK FDP L+ D IKKWREAEIKHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ YP FWV S+ +A+IE TI A+ + S VTG G LKEDY PGDLGFDPL L P+D +++++EL+ GR AMIG+ GM+ QE ++ IL
Sbjct: 11 AATLIASSTAFVAPMA----------VRSAAPASSSSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.810e-59 Identity = 101/190 (53.16%), Postives = 140/190 (73.68%), Query Frame = 3
Query: 195 TSSARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECV 764
T SAR +++A RM+ +D+ ++LPGAPF A+GK +DP GL+S+ D E IKKWREAEIKHGRV+MLA++G+LV+E FHP F+GP YIGPA+ H ++I +P FW ++ IAW+E + I + + PVTG G ++ DY PGDLGFDPLGLAP+D + +++++EL+ GR AMIG+ GMI QE V
Sbjct: 80 TLSARPTSTA--ARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 201 bits (511), Expect = 4.280e-59 Identity = 109/222 (49.10%), Postives = 146/222 (65.77%), Query Frame = 3
Query: 117 ALAFLRPSDAFVAPSASALSHAVGGSTSSARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGIL 782
A + S AFVAP A SA ++SA +++M+ +D+ A+LPGAPFG +GK FDP L+ + IK WREAEIKHGRV+MLA +G++V+E +HP FMGP YIGPAV+H Q+I+ +P FW S+ +A+IE TI A+ SPVTG G L+++Y PGDLGFDPL L PKD +Q++EL+ GR AMIG+ GM+ QE V+ IL
Sbjct: 12 AATLIASSTAFVAPMA----------VRSAAPASSASALKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 198 bits (503), Expect = 7.340e-58 Identity = 110/224 (49.11%), Postives = 149/224 (66.52%), Query Frame = 3
Query: 117 ALAFLRPSDAFVAPSASALSHAVGGSTSSARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGILEH 788
A A + S AFVAP A SA +++A +++M+ +D+ A+LPGAPF ++GK FDP L+ IKKWREAEIKHGRV+MLA++GILV+E +HP FMG +IGPA+ H Q+I+ +P FW S+ +A+IE TI A+ + S VTG G LKEDY PGDLGFDPL L P +++++EL+ GR AMIG+ GM+AQE V+GQ IL +
Sbjct: 11 AAALIASSTAFVAPVA----------VRSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 196 bits (499), Expect = 2.400e-57 Identity = 101/194 (52.06%), Postives = 134/194 (69.07%), Query Frame = 3
Query: 201 SARRSASACSVRMAGQNDFCASLPGAPFGMAAEGKYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGIL 782
SA ++SA +++M+ D+ A+LPG A GK FD LA D IK WREAEIKHGRV+MLA +G++V+E +HPFFMGP YIGPAV+H Q+I +P FW S+ +A+IE TIK A+ SPVTG G L+++Y PGDLGFDP + PKD +Q++EL+ GR AMIG++GM+ QE V+GQ IL
Sbjct: 30 SAAPASSASALKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 181 bits (459), Expect = 1.080e-51 Identity = 88/158 (55.70%), Postives = 115/158 (72.78%), Query Frame = 3
Query: 309 FDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGIL 782
FDP GL+ IKKWREAEIKHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+ +P FW S+ +A++E TI A+ + S VTG G LKEDY PGDLGFDPL L P D +++++EL+ GR AMIG+ GM+AQE V+ IL
Sbjct: 38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.340e-50 Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 3
Query: 303 KYFDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGILEHI 791
K FDP GLA + IK WREAEIKHGRV+MLA++G+LV+E +HPFFMGP YIGPAV+H Q+I+ +P FW S+ +A IE TI A+ S VTG G L+++Y PGDLGFDPL L P D +Q++EL+ GR AMIG+ G + QE V+ IL+ +
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.790e-49 Identity = 89/158 (56.33%), Postives = 115/158 (72.78%), Query Frame = 3
Query: 309 FDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTGVGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQGIL 782
FDP GL+ IKKWREAEIKHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+ +P FW S+ +A+IE TI A+ + S VTG G LKEDY PGDLGFDPL L P D +++++EL+ GR AMIG+ GM+AQE V+ IL
Sbjct: 234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.840e-47 Identity = 86/160 (53.75%), Postives = 110/160 (68.75%), Query Frame = 3
Query: 309 FDPAGLASKQDDETIKKWREAEIKHGRVSMLAAMGILVSEVFHPFFMGPVYIGPAVEHAQQIATVYPLFWVGSVSLIAWIEGQTIKNAWGSVSPVTG----VGNLKEDYYPGDLGFDPLGLAPKDGLDFRLIQSQELDLGRYAMIGVLGMIAQECVDGQG 776
FDP GL++ DD T+KK++EAE+KHGR++MLAA+GILV E FHP F G + GPA+ QQ+ VYPLFWV + +A++EG TI W S+ V LKEDY PGD+GFDPLGL PKD F ++++EL+ R AMIGV GM+AQE V G G
Sbjct: 46 FDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLFGGAIS-GPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLGPG 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2094.1 >prot_P-fluviatile_contig14.2094.1 ID=prot_P-fluviatile_contig14.2094.1|Name=mRNA_P-fluviatile_contig14.2094.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=240bp MKFATCSAAALAFLRPSDAFVAPSASALSHAVGGSTSSARRSASACSVRMback to top mRNA from alignment at P-fluviatile_contig14:906219..909508+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig14.2094.1 ID=mRNA_P-fluviatile_contig14.2094.1|Name=mRNA_P-fluviatile_contig14.2094.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3290bp|location=Sequence derived from alignment at P-fluviatile_contig14:906219..909508+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig14:906219..909508+ >mRNA_P-fluviatile_contig14.2094.1 ID=mRNA_P-fluviatile_contig14.2094.1|Name=mRNA_P-fluviatile_contig14.2094.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1440bp|location=Sequence derived from alignment at P-fluviatile_contig14:906219..909508+ (Porterinema fluviatile SAG_2381)back to top |