mRNA_P-fluviatile_contig14.2056.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2056.1
Unique NamemRNA_P-fluviatile_contig14.2056.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 2.810e-115
Identity = 178/185 (96.22%), Postives = 180/185 (97.30%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 610
            MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLK LD SDEFRIKMTEQLLEKLFAMG+INTKKSLAKTET SVS+FC RRRLPVVMVRLKMSETLTEA TYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFC-RRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 278 bits (710), Expect = 3.880e-89
Identity = 140/183 (76.50%), Postives = 160/183 (87.43%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 604
            MRKLK+HEQKLLKKVDFLQWKSDQNIREI+++RRYL+Q+R+DY KYNKI G + KL A+L+AL P+D+FRIKMTE LLEKLF MGVIN+KKSL   E V+VSAFC RRRLPVVMVRLKMSET+ EA T+IE GHVRVGPH VTDPAFLV R+MEDF+TWVD SKIKR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFC-RRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 276 bits (705), Expect = 2.280e-88
Identity = 139/185 (75.14%), Postives = 160/185 (86.49%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 610
            MRKLKYHEQKLLKKVDFLQWKSDQNIREI+VLRRY +Q+R+DYVKYN++VG +T L A+LK L  +D FR+KMT QLL KL ++GVI+T+KSL K E ++VSAFC RRRLPVVMVR KMSETL EA T+IE GH+RVGP+ VTDPAFLVTR+MEDFVTWVD SKIKR I  Y DK+DDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFC-RRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 275 bits (702), Expect = 6.240e-88
Identity = 138/183 (75.41%), Postives = 160/183 (87.43%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 604
            MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L P DEFRIKMT+ LL KL+ MG+I TKKSL++ ET++ SAFC RRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTDP FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFC-RRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 263 bits (671), Expect = 2.820e-83
Identity = 132/182 (72.53%), Postives = 156/182 (85.71%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 601
            MR+LKYHEQKLLKKVDFL+WKSD N+RE+QVLRRY +Q+RDDY KYNKI G+ITKLT+ LK LDP D  RI++T+QLLEKL+ MGV+ TKKSL + + ++ +AFC RRRL VVMVRLKMSETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFC-RRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A8IEP3_CHLRE (Small nucleolar ribonucleoprotein U3 component n=4 Tax=Chlamydomonadales TaxID=3042 RepID=A8IEP3_CHLRE)

HSP 1 Score: 254 bits (648), Expect = 8.170e-80
Identity = 126/182 (69.23%), Postives = 154/182 (84.62%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 601
            MR+LK+HEQKLLKKVDFL+WKSD N+RE+QV+RRY +Q+RDDY KYNKI G++TKLT+ LK LD  D  R+++T+QLLEKL AMG+I TKKSL + + +  ++FC RRRL VVMVRLKM+ETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFC-RRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A0A1Y1IKI8_KLENI (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKI8_KLENI)

HSP 1 Score: 253 bits (646), Expect = 1.630e-79
Identity = 122/183 (66.67%), Postives = 154/183 (84.15%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 604
            MRKLK+HEQKLLKKVDFLQWK++ N+RE+Q +R+Y + +RDDY KYNK+ G++TKLT+ LK LDP D FRI++T+QLLEKL+ MGVI T+KSLA  + +S S+FC RRRL V++VRLK +ET+ EA T++EQGH+RVGP  VTDPAFLV R+MEDFVTWVD SKIKR +  Y DK+DD+DLLG
Sbjct:    1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFC-RRRLAVMLVRLKFAETMREAVTFVEQGHIRVGPETVTDPAFLVVRNMEDFVTWVDTSKIKRKVLKYNDKLDDYDLLG 182
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: L1JBM1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBM1_GUITC)

HSP 1 Score: 253 bits (646), Expect = 1.690e-79
Identity = 125/182 (68.68%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 601
            MR+LKYHE+KLLKKV+F QWKSD+N+REIQ+LRRY VQNRDDY KYNKI GLITKLT++LK L   D  R+K TE L++KL+ MG+I+TKKSL + E +  SAFC RRRLPVV+VRLK  E L EA T++EQGH+R+GP  VTDPAF VTRSMEDF+TWVD SKI+R +  Y D VDDFDLL
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFC-RRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLL 181
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BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A0A7S1X290_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X290_9CHLO)

HSP 1 Score: 253 bits (645), Expect = 2.310e-79
Identity = 126/182 (69.23%), Postives = 154/182 (84.62%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 601
            MR+LK+HEQKLLKKV+FLQWKS+ N+RE+QV+RRY +QNRDDY  YNKI G +TKLTA L+ LD  D  RI++T++LL+KL+ MGV++TKKSL + E +S ++FC RRRL VVMVRLKMSETL EA T+IEQGHVRVGP+ VTDPAFLVTR+ EDFVTWVD SKIKR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVNFLQWKSEHNMREVQVMRRYHIQNRDDYKSYNKICGHVTKLTAVLRKLDSRDPVRIELTDKLLDKLYNMGVLSTKKSLLQVEKISTASFC-RRRLAVVMVRLKMSETLKEAVTFIEQGHVRVGPNTVTDPAFLVTRNFEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO)

HSP 1 Score: 252 bits (644), Expect = 3.270e-79
Identity = 127/182 (69.78%), Postives = 156/182 (85.71%), Query Frame = 2 
Query:   56 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVSVSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 601
            MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYNKIVGLITKLT+ LK LD  D  RI++T+QLLEKLF+MGV+ TKKSL +TE ++VSAFC RRRL VVM+RLKM+ET+ EA T+IEQGHVRVG   VT+PAF VT +MEDFVTWVD SKIKR +  Y DK+DD+DLL
Sbjct:    1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFC-RRRLSVVMMRLKMAETMKEAVTFIEQGHVRVGTETVTNPAFHVTTNMEDFVTWVDTSKIKRKVLMYNDKLDDYDLL 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI2.810e-11596.22Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A6S9JYI8_HETAK3.880e-8976.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CN51_9STRA2.280e-8875.14Small nucleolar ribonucleoprotein U3 component n=1... [more]
W7TBD6_9STRA6.240e-8875.41Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
D8UBE0_VOLCA2.820e-8372.53Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A8IEP3_CHLRE8.170e-8069.23Small nucleolar ribonucleoprotein U3 component n=4... [more]
A0A1Y1IKI8_KLENI1.630e-7966.67Alpha-L RNA-binding motif/Ribosomal protein S4 fam... [more]
L1JBM1_GUITC1.690e-7968.68Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S1X290_9CHLO2.310e-7969.23Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A250X5I3_9CHLO3.270e-7969.78Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:566058..572492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue4e-93
Seed eggNOG ortholog2880.D7FQ94
Preferred nameIMP3
KEGG koko:K14560
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG0522@1,KOG4655@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S4/S9, N-terminal
Ec32 orthologEc-01_006990.1
Exons5
Model size1343
Cds size558
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.1240451-UTR-P-fluviatile_contig14:566057..5661121622815600.1240451-UTR-P-fluviatile_contig14:566057..566112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 566058..566112 +
1693562387.6287951-UTR-P-fluviatile_contig14:566057..5661121693562387.6287951-UTR-P-fluviatile_contig14:566057..566112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 566058..566112 +
1622815600.2044835-UTR-P-fluviatile_contig14:571762..5724921622815600.2044835-UTR-P-fluviatile_contig14:571762..572492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 571763..572492 +
1693562387.6885128-UTR-P-fluviatile_contig14:571762..5724921693562387.6885128-UTR-P-fluviatile_contig14:571762..572492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 571763..572492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.1366935-CDS-P-fluviatile_contig14:566112..5662021622815600.1366935-CDS-P-fluviatile_contig14:566112..566202Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 566113..566202 +
1693562387.64018-CDS-P-fluviatile_contig14:566112..5662021693562387.64018-CDS-P-fluviatile_contig14:566112..566202Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 566113..566202 +
1622815600.1490886-CDS-P-fluviatile_contig14:569771..5698641622815600.1490886-CDS-P-fluviatile_contig14:569771..569864Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 569772..569864 +
1693562387.65236-CDS-P-fluviatile_contig14:569771..5698641693562387.65236-CDS-P-fluviatile_contig14:569771..569864Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 569772..569864 +
1622815600.1619425-CDS-P-fluviatile_contig14:570111..5702451622815600.1619425-CDS-P-fluviatile_contig14:570111..570245Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 570112..570245 +
1693562387.6611977-CDS-P-fluviatile_contig14:570111..5702451693562387.6611977-CDS-P-fluviatile_contig14:570111..570245Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 570112..570245 +
1622815600.1794171-CDS-P-fluviatile_contig14:570901..5710221622815600.1794171-CDS-P-fluviatile_contig14:570901..571022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 570902..571022 +
1693562387.6700866-CDS-P-fluviatile_contig14:570901..5710221693562387.6700866-CDS-P-fluviatile_contig14:570901..571022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 570902..571022 +
1622815600.1910765-CDS-P-fluviatile_contig14:571642..5717621622815600.1910765-CDS-P-fluviatile_contig14:571642..571762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 571643..571762 +
1693562387.6790917-CDS-P-fluviatile_contig14:571642..5717621693562387.6790917-CDS-P-fluviatile_contig14:571642..571762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 571643..571762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2056.1prot_P-fluviatile_contig14.2056.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 566113..571762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2056.1

>prot_P-fluviatile_contig14.2056.1 ID=prot_P-fluviatile_contig14.2056.1|Name=mRNA_P-fluviatile_contig14.2056.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=186bp
MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIV
GLITKLTARLKALDPSDEFRIKMTEQLLEKLFAMGVINTKKSLAKTETVS
VSAFCSRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVT
RSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG*
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mRNA from alignment at P-fluviatile_contig14:566058..572492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2056.1 ID=mRNA_P-fluviatile_contig14.2056.1|Name=mRNA_P-fluviatile_contig14.2056.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6435bp|location=Sequence derived from alignment at P-fluviatile_contig14:566058..572492+ (Porterinema fluviatile SAG_2381)
ATGATGACAGCAGAGAAAAAGCAAGCCACTTCTGCCTATTCCTCAAAGAG
GCACGATGAGGAAACTGAAGTACCATGAACAGAAGCTACTAAAGAAGGTC
GACTTCTTACAGTGGAAGAGCGACCAGAACATCCGCGAGATACAGGTGAA
GAGTAAAGAGAGAGATTGATTGCTGTCGAGGTGTGACTGGTGTTTGGCAG
TGCTGGACTCGGCTGCCCGTGTCCGTCCCGGAAGCTGCAGCATAAGCCGT
CGCTGCCCGATCCAGTGGTTACCGAAATGGTCGTGGTCGCACATCGAAAA
CCGTCTGCGGTGAACACGGGCCCTCCGCGATACATTGTCACTGTTCACGA
TTTCATGCCTACTACGGGGAACTACACAAGAACCCACGCCTCGGTGGTGA
CAGTTCCAGAATGTTTTTTCAGAAAAATATGACTGGTGTGGTTATCCGCC
GAATGTTTGGTTTCTAAGTGTAAGCCGGGTGATAAAGTGCAGCCCCCAGG
GGCCACGAAGGGGGTGTGATAGTGAGGGTGTGTGAAAAAAGGTGGGTGTG
ATAACACTGCCTGTAACGGTTTGCTACTGCTGCCGCAAACGTGGAAGTGT
ATGGTTTCGCGGGGGTGTGACAGCTATTATGATTGTACGGAATACTTGCC
GCTGCCGCGACACATTGTAGGGGTGTGGTACTGCGTTGATGTGATGTTCA
AAGGGGCTCAGGGGAGACAACACCCCTGAGCATATGACCTCGGCGACGAC
TCCAACCCCTCGCAACGCAGCAGAGGGAAACACCTTCAAAAATCATCAGC
CGTCATCACCGTCCGATGGAGCAGTAAATGTTTATTGTTTACATGGAAGA
TAACTCGCCCAACGTCATGCGACGTGGTAGCCATAGAGTGGGATCCGTCC
CGCCCCCAACAAAGGAGGCTGCAGCTTGCTCTCTCGTTCGGTCAATTGAA
GTATACGCCACGGCACAACGACCAAAATCGACGACCGCAAACCGAGCATC
TACACCACCCAAAGGAGACTCACGCGACACTTCACACGGCTGTGTGGTAG
CATTAGAGTGCGATCCGTCCCGCCACCAACAACAAAGGAGGCTGCAGCAT
CCTTGCCATCTCGTACAGCCAATATCAATATACGTCAAGGCACGACGACC
AAAATCGACGACCACTGACCGAGAATCTACACCACACAAGGAGACACAGG
CGACACTTCACACGGCTGCGAAACAGCAGAAGTCCATTCACACTCGCTCT
GAACCGAAGAAGGAAAATAAACGCGCGCAAACAAAAATGCGAAACATGAC
GAGAAGTACACCATAATCCAGTCCCTCAACATCGGCATCGCTGTCGATGC
CTAACAGCTCCCTTACGTCATCGTCGTTGCAGTCCAGCTCCACCACCCCA
GTGTCATCATCATCGACGACTTCAAGCACCTCTTACAGGTTGTCGCCTCC
CGACGAGGGGTCGGTCTTGTCCGCAACGGCCGTAGAGTGGGCCTTACCCG
CACCTGCCATTGGCGCGTCGTAGTCCAAGGGCTCACTGGGCGTTGGAGCC
GAGCTCCTCGTTAGCCCGGGCCTCGACTTCCGAGCCGTTGAACTGAAGGA
GCAGGCCAGTCTTCTTGAAGCTTGAGCGGATGTCGTCCGCGTTCAAGGCA
TCCCAAGACTTCTTGGCCCACTGCGCCAGCACCCCCCGCGAAGGCGCCTC
CGGGTAGCCGTCGTCGTTGCGTTGACGATGCTGGAAGCCATGCGGTCTTC
GTGAAGCCTGGAGACCTTTGCCTTGAAAAGCTTGTCGGCGAGGCGATCGC
ACGGCTGGAGCTCGGGATTCAGACCTCCCGGGATGAGAAACAGCGCTGTG
TTGGCCTCCGCCATCGTCTTCCTCGACGTATCCGTCTTTTGCACGGTGTA
GTCGTCCCACGCTAACAGCGTGTCAGCCTGACGGTACCCGCCCACCCGGC
CCTGGCGCCCTGGGCGCTGGCTCCACACTTGGGACATTCACACCGCGTCG
AAAACTCGCTGGCCGTGCCATACCTTCGGGTCCACGGCGTAGAAGACGCC
TCGGGGTCATGAGTAGCCCTTAGCGTCCCGGTAGGTCCTGAACTCGCGCT
CGATGCTAATAGCGGCGGGGATTTTCACCTTCGGCGTGGGCTGGCCCCTG
TACACGAGGAAAGGCAGAAGCTTACGGCCGTCGGCGAACACCGTCAGTAC
AAACTCGATGCCCGTCTGCTCCTGGCCGACGTTCTGCGAGACTCCATACA
GCAGCGAAAGGCGATGTCGAAGTAGGGTACGTAGAAGCCGGTTTTGGTGT
TAGACTTGGAAAAGTGGCGGCAGTTGCTTGCAAGAACGCAGAGGACAGGA
CGCGAAGAATAAGAAAGCACCTACCTGAAGATCAAAGCACACACAAGCAA
CCAATGCGGCAAAGATATACATCAACGGAGGACAGGAAATGCTAAACCAA
ACACCGGTACAAGCAAAAGCAGAGCGAAGAAAATACTCACCGCCACATTT
GTCTTCCCCGCGCTCTCGAACCACACCCGAGTTTCATCCATGTTGCCCGT
GTGCTTCAAGGAGAACTCGAGAATTGGCCCCGAAGAGATTCCATGGCCAC
TGCCCCCTAGGCATTCAAATCCGTCCGCAAGTTCAATCGTGGAAGGCACG
TCGAACCTCAGGGCGATCGCACGCCAGCCTGAAGGGAATTTCTGGCCTTG
CCGGGAAACAGCTCGCACAGACAAGCCGAACGCTCTGAGAAACCTTCTGC
ACCACGCGGTCTGCTTCTTCCCGTACGGTTGTCCGCGGGATCGGATGGCG
GCGGCCACTCCTCGAAGGAGTGCGGGGGGAGCTCGATGGCCTTGTGCTTG
ATCATCGCGTTGGAGCACGGGCGGAAACGCGGTCAGTGCGCAGATCATGG
ATCCGGTTCACGCTCTCGCGCTCGGCGCCCGCGTACGCGCCAATCCGTCC
GATGTTTGTCGACTTGAGCTTCTGAGTACTCGTTGTGCCGCGCGGTCCCT
TGTGCTTCGCCACTCAGCCAGCTTGGCCTCGTGCTTGTCTACGTTATTGA
CCCACTCCGCCAAGGTGGCCTTGTCGGGGATCTTCATGATGCTGCTGGCG
TACAATATCCCAGCAGTCCCGCCCGGCCCTTGCGTTCCCTTGATATTTTT
CTGCGAATACCTCACTGCACCCACTCCACCGCGAGCCGATGCCGCTGATG
TAGAATTATGGCCCTTTTCATCGCCCTGCATCTTCGGCGAAGAGGGTGGA
AGTCGTCCCTAGGGTGTAACCACGCTTGCAGCATTGTTTGTCTCTAATTC
ACGATGCGTGTTTATCTGGGCGCTCCTCACGTTCAGCAAGCGTGCTGCTG
CAGTCGATCTTTCCCTCCCGCTGTCCTTCCCCCCTTCCCCGTTCCTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCATCTGATGTGTTTTCGATGTGTTCAA
AGTGTAATTCATTATATCGTCAATCAATCGTGCGCCGCCTTGGTTGGGAT
TCCATAACCAACAGCTACTCATAGTCGTACGCTAGGGCCTCAATCACCGA
CCCTTGTCCTTCCACGCGCTCATTGCCCGGTGTGAGTGTTTAAAAATAAT
GCACTCGCTCGCTGCTGTTTTTGCTTAGTTGCTCATGCCAGACGACGGAC
GCTCCTGCTGCTCCGACCATACCGCTGCTACTTTGGTATTTTTTCTCTTC
TTTGACACGTGCAGGTACTCCGACGATACTTGGTGCAGAACAGAGACGAC
TACGTCAAGTACAACAAGATCGTCGGCCTCATCACAAAGCTCACAGCCAG
ACTCAAGGTAACTGCGAAAGCTTGTGCCCAAAAGCAGATTGGTGGAATTT
GTCTGTCATCCTTGTAAGTATTTCCGGGCAGCGAACGGGACGTGTGTTGT
TGCTTCAACTGAAATCGCTTTGCCGTTGCTTCGTCGGTTGGTTCTCCGTG
GAAATGTAGGCGAGGAAGTGCAAGCGCTCCTGCAAAACTTGGAAATGTCG
ACCAATGCTGCGCTTCCGTCTCCCTTGTTTTCGCCTCATTCCTTCTGGCT
GCAGGCATTGGATCCGAGCGACGAGTTCCGAATAAAGATGACGGAACAGC
TGCTGGAGAAGCTCTTCGCTATGGGGGTAATCAACACGAAGAAGAGTCTC
GCCAAAACGGAAACGGTCAGCGTGTCGGCTTTCTGCAGGTGAAATCTTGC
TTCCACCAATACACGCGTCATCACGTACTTCAAAACAGCACAACGCGTTC
CTGAGGTCCGGCCTGGCCATTCCGTGGGACTGAATGCTCACCTACCGAGT
CATGGAGGAGGCTGCGATTCCCGCGAATACGACTTGTGCGCGTCCGAGAT
TTGCCAAAAGTGGAAACATTCAAATCTCCTGCAAGCACAAGGAACGGTTT
CGGGGTCGTTATGTCGTGTCCGTCTGCAAGACCTGACGCGCACTCTTTCC
ACGAGGGGCACTTGTTTGCTGCCTGCGAACGTGAAACTGCTGTTGTACGC
AGTCGGTCGTGTTGAAGAGTATCTACAGCAGGAGGTTGAGAACCGTTTGT
TCCGTGTATGCGCAGCTCGCCTCCATCGCAAGCACGAATACACACGGAAG
AAGCCGTTGGTGGCGGGTCCAAGCTGTTCCCAAAAGAATGACGCATTTCG
CATCACTGGATGCGGATGAGCAGAAGACCTGCTCGATTAGTTTTCAGCCC
TTCCTGACACCTTGAGATGGTTAGTTCGAGGAAATTCCAGACGGATACGA
AAGGTCTGACGAAGCCTTGCATTTCTGCAGGAGCGTTCGCGCTTCCTTGG
AGTCAAACTAACGCGTATCTTGGATTGCGTCAATCGTCCGCGAGCAGGCG
AAGATTACCTGTTGTCATGGTGCGACTCAAGATGTCCGAAACGCTCACGG
AGGCCGCGACGTACATAGAGCAGGGGCACGTGAGGGTCGGCCCCCATGCC
GTCACGGATCCGGCGGTGAGTCGGCGACTTTCAGTTCGAATGTGTGGGGC
AGGCGAGGAGACGTGGACATCGAGAGACGCCTAGATTGGGAGTTGGGTGG
CTGGATCTATGGTTCATGTCGCTCGCGTCCTGAACGCTTGTAGGGCAGCG
AATGCACACCTCTGATTCGCACAATTTGAAAGAAATGAACCTTATCCCAG
CTGCTGTGTGGTGCTTGCAAGCTCAGTTCCAAGTCTGACATGCCAACGGT
TTCGATTCATGGCTTTCCGGCGTATCTTTGGTTCGTTGGTCAGTGAGGAT
TTCCGATTCATAATGCACAGCTTATCCTGATGTGTACGACTTCTGGTATA
CGCGATCAGGCTAACTTCCGTTTTCCATCGGCTACGATTTCAGTCGGTGC
TTCTCGATGAAACGAAACCGATTTGATATTTGGTTCCTTTTCCAAATCGT
GCCACGTACTTATGGCACTACGCGCCACGACCACCTTTCTCTCACTTGTG
ACAATGCTGTACAATGCGAGGGTATGCCGCCCTCTCCCGAGTACGGCGCG
ATTTGAACTTCCCAGGCATTTAGCATTCAATTTAGCGCGTGTGTCGTCCT
TTCACTGCCGCACTGTGCCGAAATTTCCTAACAAGTTTCTGGTCACACGG
AGTATGGAAGACTTCGTGACGTGGGTGGACGGGTCGAAGATCAAGCGAGC
CATCAAGACCTACGAGGACAAAGTGGACGATTTCGATTTGTTAGGCGAGG
GATAGGCGAGGGATGAGAAGTGTCGTCCTCGCCGGCCATCCCCGGTGCTC
CTGTATCTGTCGTGCCTCGTTCCGTGTTGCATGTGTGTTCGAGTGTGTGT
TCCATTGCAACCCTGGGCGCGTATGAAGGGTGTTTCCATGGCAAGCGTGG
TTTGCTTGCCGTCCGCCGATCAATCACCCTGCAAGCGTAAGAAATTGGAC
CGACATGGGGTGTTGTCGGGTGGAGAAGGGCAAACTTTCACGTAATAGTT
CGTCGTGTAACTACATTTTCGTGTCACCGGGCATTCCGTGCTGATTGACC
ACCCTCCGACGGGTGTCAGGACTGCATTATTGCTGAGCCCCGCCATTTTC
GCGTCACAGAGGGAGTTCTGACGACGACACGTCCGACGATGGTCCCTGAA
CCTGCTCTGCTTTCATCCTTGTTTTCCACGTCGCCTGTGAACAACACGTG
CCTCTTTTTTCACCTGGGGCACGAACGAACCGCCATGGTCGAATCATCGC
TCCGCAGTGCGTGCGTTCGATGAAGCGGGTCTGTCGATGGCCCAGATGTG
GAGGATGATGTTGAGGGAGCCCCTCCTCTTTCGATTTGGTAGTTCCCGAG
ATTTCGGGGTGTTCGAAACTCCCCAGATACCGCGGTGATCGCGTGGTGAC
TGAAGAACGGTCTCGAAGGACCTGGCCCAGGTAAGCATACCTCGGCAACG
CCCGCTTGTCTCTTGACCGTGATAATCAAGCCCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:566058..572492+

>mRNA_P-fluviatile_contig14.2056.1 ID=mRNA_P-fluviatile_contig14.2056.1|Name=mRNA_P-fluviatile_contig14.2056.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1116bp|location=Sequence derived from alignment at P-fluviatile_contig14:566058..572492+ (Porterinema fluviatile SAG_2381)
ATGAGGAAACTGAAGTACCATGAACAGAAGCTACTAAAGAAGGTCGACTT
CTTACAGTGGAAGAGCGACCAGAACATCCGCGAGATACAGATGAGGAAAC
TGAAGTACCATGAACAGAAGCTACTAAAGAAGGTCGACTTCTTACAGTGG
AAGAGCGACCAGAACATCCGCGAGATACAGGTACTCCGACGATACTTGGT
GCAGAACAGAGACGACTACGTCAAGTACAACAAGATCGTCGGCCTCATCA
CAAAGCTCACAGCCAGACTCAAGGTACTCCGACGATACTTGGTGCAGAAC
AGAGACGACTACGTCAAGTACAACAAGATCGTCGGCCTCATCACAAAGCT
CACAGCCAGACTCAAGGCATTGGATCCGAGCGACGAGTTCCGAATAAAGA
TGACGGAACAGCTGCTGGAGAAGCTCTTCGCTATGGGGGTAATCAACACG
AAGAAGAGTCTCGCCAAAACGGAAACGGTCAGCGTGTCGGCTTTCTGCAG
GCATTGGATCCGAGCGACGAGTTCCGAATAAAGATGACGGAACAGCTGCT
GGAGAAGCTCTTCGCTATGGGGGTAATCAACACGAAGAAGAGTCTCGCCA
AAACGGAAACGGTCAGCGTGTCGGCTTTCTGCAGCAGGCGAAGATTACCT
GTTGTCATGGTGCGACTCAAGATGTCCGAAACGCTCACGGAGGCCGCGAC
GTACATAGAGCAGGGGCACGTGAGGGTCGGCCCCCATGCCGTCACGGATC
CGGCGCAGGCGAAGATTACCTGTTGTCATGGTGCGACTCAAGATGTCCGA
AACGCTCACGGAGGCCGCGACGTACATAGAGCAGGGGCACGTGAGGGTCG
GCCCCCATGCCGTCACGGATCCGGCGTTTCTGGTCACACGGAGTATGGAA
GACTTCGTGACGTGGGTGGACGGGTCGAAGATCAAGCGAGCCATCAAGAC
CTACGAGGACAAAGTGGACGATTTCGATTTGTTAGGCGAGGGATAGTTTC
TGGTCACACGGAGTATGGAAGACTTCGTGACGTGGGTGGACGGGTCGAAG
ATCAAGCGAGCCATCAAGACCTACGAGGACAAAGTGGACGATTTCGATTT
GTTAGGCGAGGGATAG
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