mRNA_P-fluviatile_contig14.2050.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2050.1
Unique NamemRNA_P-fluviatile_contig14.2050.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2050.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.420e-22
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 VWNSHDDEVLRTDADDTGDVNGRTPLSQLTRSSKLYAKMMGETMPETRVHTREEKRKFREEVAQNFWQPGDPAGRSQRFQHINFDGWAVKWNAYCTQIQQGTVP 312
            VW   D++   TD  D+ DVNGRTP+S LT S+K+YAKMMGE+MPETRVHT               W      GR Q +Q +NFD WA KWNA C Q+QQG  P
Sbjct:  763 VWGIADNDAFCTDDGDS-DVNGRTPMSDLTLSAKMYAKMMGESMPETRVHT---------------W------GRMQLYQRVNFDAWAGKWNADCDQVQQGLAP 844
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BLAST of mRNA_P-fluviatile_contig14.2050.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-17
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   43 DDTGDVNGRTPLSQLTRSSKLYAKMMGETMPETRVHTREEKRKFREEVAQNFWQPGDPAGRSQRFQHINFDGWAVKWNAYCTQIQQGTV 309
            D+ G      P+ +LT S+K YA+MM   MP T VHT  EKR F  E+    + PG P GR++++Q+INFD WA  WN +C +I+ G V
Sbjct:  449 DEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRNFASELNSQLYLPGQPEGRNEKYQNINFDAWAGAWNQHCAKIESGLV 537
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BLAST of mRNA_P-fluviatile_contig14.2050.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-12
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 VWNSHDDEVLRTDADDTGDVNGRTPLSQLTRSSKLYAKMMGETMPETRVHTREE 162
             WN    E    + DD GDVNGRTPLS L  S+KLYA++MGE MPETRV+T+EE
Sbjct: 1025 AWNGAGHEASCAEVDDVGDVNGRTPLSHLALSAKLYARIMGEKMPETRVYTKEE 1078
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE2.420e-2250.963'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KLP1_9PHAE1.720e-1744.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M0_9PHAE8.440e-1261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:510140..510454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.217879-CDS-P-fluviatile_contig14:510139..5104541622815599.217879-CDS-P-fluviatile_contig14:510139..510454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 510140..510454 +
1693562384.3939748-CDS-P-fluviatile_contig14:510139..5104541693562384.3939748-CDS-P-fluviatile_contig14:510139..510454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 510140..510454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2050.1prot_P-fluviatile_contig14.2050.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 510140..510454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2050.1

>prot_P-fluviatile_contig14.2050.1 ID=prot_P-fluviatile_contig14.2050.1|Name=mRNA_P-fluviatile_contig14.2050.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=105bp
VWNSHDDEVLRTDADDTGDVNGRTPLSQLTRSSKLYAKMMGETMPETRVH
TREEKRKFREEVAQNFWQPGDPAGRSQRFQHINFDGWAVKWNAYCTQIQQ
GTVPW
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mRNA from alignment at P-fluviatile_contig14:510140..510454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2050.1 ID=mRNA_P-fluviatile_contig14.2050.1|Name=mRNA_P-fluviatile_contig14.2050.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=315bp|location=Sequence derived from alignment at P-fluviatile_contig14:510140..510454+ (Porterinema fluviatile SAG_2381)
GTATGGAACAGCCACGATGACGAGGTGCTGCGCACTGATGCGGACGACAC
CGGTGACGTCAACGGCCGAACGCCGCTGTCGCAGCTCACGCGTTCGTCCA
AGCTTTACGCGAAGATGATGGGCGAGACCATGCCGGAAACTCGGGTTCAC
ACCAGGGAGGAGAAGCGCAAGTTCCGGGAGGAGGTAGCACAGAACTTCTG
GCAACCCGGCGACCCCGCGGGTAGGTCCCAGCGGTTTCAGCACATCAACT
TTGATGGATGGGCGGTCAAGTGGAACGCCTACTGCACTCAGATCCAACAG
GGTACGGTGCCCTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:510140..510454+

>mRNA_P-fluviatile_contig14.2050.1 ID=mRNA_P-fluviatile_contig14.2050.1|Name=mRNA_P-fluviatile_contig14.2050.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=630bp|location=Sequence derived from alignment at P-fluviatile_contig14:510140..510454+ (Porterinema fluviatile SAG_2381)
GTATGGAACAGCCACGATGACGAGGTGCTGCGCACTGATGCGGACGACAC
CGGTGACGTCAACGGCCGAACGCCGCTGTCGCAGCTCACGCGTTCGTCCA
AGCTTTACGCGAAGATGATGGGCGAGACCATGCCGGAAACTCGGGTTCAC
ACCAGGGAGGAGAAGCGCAAGTTCCGGGAGGAGGTAGCACAGAACTTCTG
GCAACCCGGCGACCCCGCGGGTAGGTCCCAGCGGTTTCAGCACATCAACT
TTGATGGATGGGCGGTCAAGTGGAACGCCTACTGCACTCAGATCCAACAG
GGTACGGTGCCCTGGGTATGGAACAGCCACGATGACGAGGTGCTGCGCAC
TGATGCGGACGACACCGGTGACGTCAACGGCCGAACGCCGCTGTCGCAGC
TCACGCGTTCGTCCAAGCTTTACGCGAAGATGATGGGCGAGACCATGCCG
GAAACTCGGGTTCACACCAGGGAGGAGAAGCGCAAGTTCCGGGAGGAGGT
AGCACAGAACTTCTGGCAACCCGGCGACCCCGCGGGTAGGTCCCAGCGGT
TTCAGCACATCAACTTTGATGGATGGGCGGTCAAGTGGAACGCCTACTGC
ACTCAGATCCAACAGGGTACGGTGCCCTGG
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