mRNA_P-fluviatile_contig14.2027.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2027.1
Unique NamemRNA_P-fluviatile_contig14.2027.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2027.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 9.960e-6
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 2 
Query:  194 SSGLIALVLASAAQYVDIMAVLMDAGVADSGRALLAAAVFGCDASV-----NSHLQKGQQSCTAK*VPRPASSNT-LPVCSGP*FSPLPP--GLLLDAGEETALPVEVRAGEGRMSLHGTPLAVVSRKIRE*KIPGNG 583
            S+G  AL  A++ Q++DIMA+L +AGV D+G+AL  AA  G +ASV     + H + G     A    R  +  T L VC+   FS  P    +L+DAG +T  PV+V   +G +  + TPLA    ++R+ KI  +G
Sbjct:  310 SAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRK-KIVADG 446
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BLAST of mRNA_P-fluviatile_contig14.2027.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.070e-5
Identity = 65/199 (32.66%), Postives = 93/199 (46.73%), Query Frame = 2 
Query:  188 GESSGLIALVLASAAQYVDIMAVLM-DAGVADSGRALLAAAVFGCDASVNSHLQKGQQSCTAK*--VPRPASSNTLPV-----CSGP*FSPLPPGLLLDAGEETALPVEVRAGEGRMSLHGTPLAVVSRKIRE*KIPGNGNTPESTPGVLGVSRNGILGKAATTRTSCAGSKASAACCRGWMLCMLSLCFGRATSFPPL 760
            G S G+ ALV A+  ++VDIM +L+ DAGV D+G AL+ AA +G   SV   LQ+ +Q+   +   V  P      P+        P  S +   LL+DAG +T   V +   +G   +  TP  +  R+IR  K+ G  +       ++  S             SCA  + SAACC  W   + SL  G AT  P L
Sbjct:  142 GPSRGVNALVTAARDKHVDIMVLLLTDAGVVDTGGALITAAHYGGVVSVEHLLQRQKQTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIA-RLLVDAGADTTSTVTMADVQGFGLMAYTPKEIAIRRIRRKKVEGKED-------IVATS-------------SCAAWRPSAACCCKWKQFVRSLGCGLATIPPSL 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT11_ECTSI9.960e-637.68EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LB36_ECTSI3.070e-532.66EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:302306..305192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2017
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2027.1prot_P-fluviatile_contig14.2027.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 304817..305149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7553551-UTR-P-fluviatile_contig14:302305..3029451622815595.7553551-UTR-P-fluviatile_contig14:302305..302945Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 302306..302945 -
1693562374.582288-UTR-P-fluviatile_contig14:302305..3029451693562374.582288-UTR-P-fluviatile_contig14:302305..302945Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 302306..302945 -
1622815595.7698083-UTR-P-fluviatile_contig14:303815..3048161622815595.7698083-UTR-P-fluviatile_contig14:303815..304816Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 303816..304816 -
1693562374.5922222-UTR-P-fluviatile_contig14:303815..3048161693562374.5922222-UTR-P-fluviatile_contig14:303815..304816Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 303816..304816 -
1622815595.8170605-UTR-P-fluviatile_contig14:305149..3051921622815595.8170605-UTR-P-fluviatile_contig14:305149..305192Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 305150..305192 -
1693562378.3084047-UTR-P-fluviatile_contig14:305149..3051921693562378.3084047-UTR-P-fluviatile_contig14:305149..305192Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 305150..305192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7859383-CDS-P-fluviatile_contig14:304816..3051491622815595.7859383-CDS-P-fluviatile_contig14:304816..305149Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 304817..305149 -
1693562378.290014-CDS-P-fluviatile_contig14:304816..3051491693562378.290014-CDS-P-fluviatile_contig14:304816..305149Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 304817..305149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2027.1

>prot_P-fluviatile_contig14.2027.1 ID=prot_P-fluviatile_contig14.2027.1|Name=mRNA_P-fluviatile_contig14.2027.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MATRKSETQHASTLQRNHRRGYSSPPSCPPGRSLGGGGRAGNRGSGNVGE
SSGLIALVLASAAQYVDIMAVLMDAGVADSGRALLAAAVFGCDASVNSHL
QKGQQSCTAK*
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mRNA from alignment at P-fluviatile_contig14:302306..305192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2027.1 ID=mRNA_P-fluviatile_contig14.2027.1|Name=mRNA_P-fluviatile_contig14.2027.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2887bp|location=Sequence derived from alignment at P-fluviatile_contig14:302306..305192- (Porterinema fluviatile SAG_2381)
ATCGCGAGCCTGTTCCTACACTCGTAGACAGAACACCTTACACATGGCTA
CGCGCAAGAGTGAAACGCAGCACGCTTCTACCCTCCAGCGGAACCATCGA
CGAGGATATTCGTCACCTCCGTCGTGTCCGCCGGGACGGTCGCTAGGAGG
TGGTGGACGAGCTGGTAACAGAGGGTCAGGAAATGTCGGTGAAAGCAGCG
GTCTAATCGCTCTCGTCCTGGCGTCGGCGGCCCAGTATGTGGACATTATG
GCCGTACTGATGGACGCCGGGGTGGCTGATAGCGGCAGGGCCCTGCTTGC
CGCCGCGGTATTTGGCTGCGATGCATCCGTGAACTCTCATCTGCAGAAAG
GACAGCAATCATGCACGGCTAAATGAGTACCCAGGCCGGCATCGTCAAAC
ACCCTTCCTGTTTGCTCAGGCCCATGATTCTCCCCCCTTCCCCCAGGGTT
GCTATTGGACGCCGGAGAGGAAACAGCATTACCCGTTGAAGTAAGGGCTG
GCGAAGGAAGAATGAGTTTGCATGGCACGCCTCTGGCCGTCGTATCTCGT
AAAATCCGTGAGTAGAAAATACCAGGAAATGGAAATACTCCGGAGTCTAC
TCCAGGAGTGCTCGGAGTATCACGAAACGGAATCCTAGGAAAAGCCGCAA
CCACGAGGACCAGCTGCGCAGGCTCGAAGGCATCCGCCGCTTGCTGTCGC
GGGTGGATGTTGTGCATGCTGTCACTCTGCTTCGGCCGAGCGACGAGTTT
CCCTCCTCTCGCAGCCGGTGCTGCAGACATGTCGAGCAGGACCAGTACGA
CCTCGACCCCGCTCAATCAAGATGATGTTGCCGCTCTTGATGCGCAACGC
TAAAGCCCGCCGCGAACTTTTGGCGACCCTGTTCAGTTGAGTGACGAGAT
ACCTCGTAGAGAAGGGAACATAGCGTCTGTTTTTCTGCTTCTTGATTTCG
GTTTGCTTAAAATCCTCTGTCGCACACGTATCAGATGTATTCCTACTCCA
TGAAACTGTCGGTGGTACGAACACCTCCGTTTTTCCTTTGCCCTGCCGGC
CCCGATGTGCTGCGCTCGAAGGAGATTTAAACATCGGTACTACGCCCATT
TGTCCGGGCGGGCATTGATTTTCCCATGTTGCTGACACCCTTAAACCGAG
TCCAGTTTGTTCAAGACTGGAGGAAACGCGTCAGAGCGTAACCTCAGGCT
AACGCTAGCGCAACTTTTCGTCACCTCGATGTGCGTTGGCACGTTTGCAC
AGAACATCAAAGAAGCCTTGCTCGGAATCTGCTCGCGGTGTGGGGAGCGG
TGCTTCGCGCTCTTCCTTCGGCGGCGGCGATAACGGACGGGTCGGCGAGT
GCTTTGCAGCAGAAGCAGTAGCGGCAGGTTGGCAGCAGCGCCGATCGCAT
GCAGTTTTGCCTGCGAGGGCTACAAAAAGTGGAGTTGCTCAATTCGGTCG
GTGCTTTCCATGCACGGCACAACACCTAACACCACGCAACTTGGCCTACG
TGAAGTAATGTCCACACCTGGAATTATCTCGTCTGGCTTCAATCTCACTA
TGGTCGTTGCACGTACTATCTGATGTGTCTGGAGTGCTTTATTTATTTCC
GAAATTTGGCGGAAGCTGAAGCACCAAGTAGATTGACAGGGTAAAGCCGT
TACATGCCCTTCGCATGCCAGGTAGTCGGCATTTATGGTAGTCGATCGGT
ACCCACGTGTATCACGGATGAAGGCAGATGATATTGAACCGACTTCTAGC
CATAGCCTTCGAACTCGGTCGAGTGCTACAGTATGGAATGGAAAATCTAT
CCTGGTGGCGCTCGCGCTTCACAAAAACATGTCTCATTCGAAGCATGGTC
GCGTGTGTAAGAAATCGCCATTTCCTCGGAGTCTTCTGGGGGACAAGGCT
AGAAACCCAAAAATTAGTCGCCACCCGCCACACTGCTGCAGCGTGTAATT
TCAATGAGTCGCGGCCGGGTGTAGGCTTTACATGCTTAGTCAAGTCGAGC
TCGAATTTTGCTTGGAGTTCCATTCCTGAGACCTCGGCATCTGTTTTGGC
GAAAAAAGTACATTCGCGTGTCTTGACCCGTTTTTCGTGTTTCGTCCATT
TTTATTTTTGTCCTCCCGGCCGGCTCCTCGGACCTCACGAAGTTGCTCAC
GTGAGCTCGCGGGAGAGCATCCGCACAAGCCGTTTACACTGATCATCAGA
GTTTTGTTTGCGGGATCCCTCTATGGTCGCCGACAATGAAAACGCAGGCT
TACACGCTCTGGTCGGGTGGGGACCTGGTCTACGGGACGTTCACCGCATC
GGAGACAGCCATGCGCTGGTTGGGCCGGCAGCCTTGCGCACAATAAACCT
TCACGTTGGGAGCGACTGTCCGGGGTTATACCAACCGCTTTTTAAGTTTG
TGTGGTTTGTTCAAAGGTGGAGTAAGTACGTCAGCACGTGCGCGTACACA
GCCTAAGATTAGCGTGCGTCGTCGCGAGCAGGCCGTGTGCCGAGCTGCTC
ACATGACTGACTTCGTATTTAGGGGGCTCGGCCTTCGCAGGTTGAAGATT
TGAAGCGTGGCTTCCAGTTTTTCTCTATACTTTTTGGACTCTCTCTCGAC
GCGTATACAGACGGCACAAAACTGCTCCTGGAGTAGGTTGCCGTCGCCTG
AAGACTGCCCACGCGCGTCAGGAGCTATTAGTGCCCAGACCCCCACCATC
GACCCCTCTCCTTCTGATGACCTGTCATCGAGGAGATACAGGTCGCGTGA
GGGCGTGATAACGTTTGGGGAGTCGTGGCGCGATAAGCAGTTATTTTTTT
GACTCACATGAAGGTGTCACGATGACCTTGACGTTTCCCACGCGCTGTTT
TTGCGGTGTGTGCGGTGATTCGATCCGTTGGGAAACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:302306..305192-

>mRNA_P-fluviatile_contig14.2027.1 ID=mRNA_P-fluviatile_contig14.2027.1|Name=mRNA_P-fluviatile_contig14.2027.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig14:302306..305192- (Porterinema fluviatile SAG_2381)
ATGGCTACGCGCAAGAGTGAAACGCAGCACGCTTCTACCCTCCAGCGGAA
CCATCGACGAGGATATTCGTCACCTCCGTCGTGTCCGCCGGGACGGTCGC
TAGGAGGTGGTGGACGAGCTGGTAACAGAGGGTCAGGAAATGTCGGTGAA
AGCAGCGGTCTAATCGCTCTCGTCCTGGCGTCGGCGGCCCAGTATGTGGA
CATTATGGCCGTACTGATGGACGCCGGGGTGGCTGATAGCGGCAGGGCCC
TGCTTGCCGCCGCGGTATTTGGCTGCGATGCATCCGTGAACTCTCATCTG
CAGAAAGGACAGCAATCATGCACGGCTAAATGAATGGCTACGCGCAAGAG
TGAAACGCAGCACGCTTCTACCCTCCAGCGGAACCATCGACGAGGATATT
CGTCACCTCCGTCGTGTCCGCCGGGACGGTCGCTAGGAGGTGGTGGACGA
GCTGGTAACAGAGGGTCAGGAAATGTCGGTGAAAGCAGCGGTCTAATCGC
TCTCGTCCTGGCGTCGGCGGCCCAGTATGTGGACATTATGGCCGTACTGA
TGGACGCCGGGGTGGCTGATAGCGGCAGGGCCCTGCTTGCCGCCGCGGTA
TTTGGCTGCGATGCATCCGTGAACTCTCATCTGCAGAAAGGACAGCAATC
ATGCACGGCTAAATGA
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