mRNA_P-fluviatile_contig14.2007.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2007.1
Unique NamemRNA_P-fluviatile_contig14.2007.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2007.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 2.420e-85
Identity = 189/268 (70.52%), Postives = 208/268 (77.61%), Query Frame = 1 
Query:    1 FSAIRRGDLAEVKRFLDNGGNIETIGGRFHSTLLTEACRFRATKVVDLLLDRGAAANARGGGFWTPLHYACSSDGSATAAAA----LVSKLLQHHAEVDATDFVGRTPLHLSCAKGFAAAALVLLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEAANCWGLLAGTLAPGYKMNPRLQGDDGDDDAAAGACVACSAKKGFHYYFCKTEILRDLPDGLVLGPDGLP 792
            F AIRRG+LAEVKRFLD GGN+ET+GGRFHSTLLTEACRFRATKV+DLLL+RGAAAN  GGGFWTPLHYAC+     TAAAA    LV+ L+ +H EVDATDF GRTPLHL+C+KG AA AL LLEA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 P A NCWG LAGTLAP YKMNP +  D+   DA  G C+ACSA KG HYYFC++EIL++LPD +VLGPDG P
Sbjct:   16 FRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPCRGTAAAAAAAKLVTTLVANHGEVDATDFYGRTPLHLACSKGSAAVALALLEAGAEPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERQSLAMSLLESAGADPGAKNCWGELAGTLAPDYKMNPVVH-DEEHQDADTGPCIACSATKGRHYYFCRSEILQELPDSMVLGPDGKP 282
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BLAST of mRNA_P-fluviatile_contig14.2007.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.310e-80
Identity = 198/266 (74.44%), Postives = 221/266 (83.08%), Query Frame = 1 
Query:    7 AIRRGDLAEVKRFLDNGGNIETIGGRFHSTLLTEACRFRATKVVDLLLDRGAAANARGGGFWTPLHYACSS----DGSATAAAALVSKLLQHHAEVDATDFVGRTPLHLSCAKGFAAAALVLLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEAANCWGLLAGTLAPGYKMNPRLQGDDGDDDAAAGACVACSAKKGFHYYFCKTEILRDLPDGLVLGPDGLP 792
            AIRRG+LAEVKRFLD GGN+ET+GGRFHSTLLTEACRFRATKV++LLL+RGAAAN  GGG WTPLHYAC+       +ATAAA LV+ L+++H +VDATDF GRTPLHL+C+KG AA AL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      P A NCWG LAGTLAP YKMNP +  D+   DA  G C+ACSA KG HYYFC++E+L+DLPD +VLGPDG P
Sbjct:   21 AIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAATAAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAGADPAAKNCWGELAGTLAPDYKMNPVVH-DEEHQDADTGPCMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKP 285
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BLAST of mRNA_P-fluviatile_contig14.2007.1 vs. uniprot
Match: A0A553P5T0_TIGCA (Protein kinase domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P5T0_TIGCA)

HSP 1 Score: 55.1 bits (131), Expect = 5.160e-5
Identity = 40/123 (32.52%), Postives = 62/123 (50.41%), Query Frame = 1 
Query:    1 FSAIRRGDLAEVKRFLDNGGNIETIGGRFHSTLLTEACRFRATKVVDLLLDRGAAANARGGGFWTPLHYACSSDGSATAAAALVSKLLQHHAEVDATDFVGRTPLHLSCAKGFAAAALVLLEA 369
            F  IR+GD  +V+ +LD+  +    G     + L  A +   +K+VD+L+ RGA  +    G  TPLH A        AA      LL H A+++  +  G TPLH +C   + + AL L++A
Sbjct:    5 FHWIRKGDAIQVRLWLDDTEHDMNQGDDHQFSPLHWAAKGGHSKIVDMLIQRGARVHTTNMGDDTPLHLA--------AAHGHQDILLNHKADLNFINEHGNTPLHYACFWNYESVALDLVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQI7_ECTSI2.420e-8570.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVF4_9PHAE1.310e-8074.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A553P5T0_TIGCA5.160e-532.52Protein kinase domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:152408..155709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.9
Seed ortholog evalue2.7e-69
Seed eggNOG ortholog2880.D7FQI7
Preferred nameANKRD42
KEGG koko:K06694,ko:K10329,ko:K17593
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-01_008830.1
Exons4
Model size816
Cds size816
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2007.1prot_P-fluviatile_contig14.2007.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 152408..155709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.5092318-CDS-P-fluviatile_contig14:152407..1527071622815593.5092318-CDS-P-fluviatile_contig14:152407..152707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 152408..152707 +
1693562373.0638268-CDS-P-fluviatile_contig14:152407..1527071693562373.0638268-CDS-P-fluviatile_contig14:152407..152707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 152408..152707 +
1622815593.5202575-CDS-P-fluviatile_contig14:153604..1536741622815593.5202575-CDS-P-fluviatile_contig14:153604..153674Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 153605..153674 +
1693562373.0736914-CDS-P-fluviatile_contig14:153604..1536741693562373.0736914-CDS-P-fluviatile_contig14:153604..153674Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 153605..153674 +
1622815593.530133-CDS-P-fluviatile_contig14:154107..1544071622815593.530133-CDS-P-fluviatile_contig14:154107..154407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 154108..154407 +
1693562373.081602-CDS-P-fluviatile_contig14:154107..1544071693562373.081602-CDS-P-fluviatile_contig14:154107..154407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 154108..154407 +
1622815593.5396955-CDS-P-fluviatile_contig14:155563..1557091622815593.5396955-CDS-P-fluviatile_contig14:155563..155709Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 155564..155709 +
1693562373.091737-CDS-P-fluviatile_contig14:155563..1557091693562373.091737-CDS-P-fluviatile_contig14:155563..155709Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 155564..155709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2007.1

>prot_P-fluviatile_contig14.2007.1 ID=prot_P-fluviatile_contig14.2007.1|Name=mRNA_P-fluviatile_contig14.2007.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=272bp
FSAIRRGDLAEVKRFLDNGGNIETIGGRFHSTLLTEACRFRATKVVDLLL
DRGAAANARGGGFWTPLHYACSSDGSATAAAALVSKLLQHHAEVDATDFV
GRTPLHLSCAKGFAAAALVLLEAGAEPNAADNDGRTPVHHAASYGRREAI
AVLLSFGGDTSAVDRELDTPLHLATRGRHRLAMSLLEGAGADPEAANCWG
LLAGTLAPGYKMNPRLQGDDGDDDAAAGACVACSAKKGFHYYFCKTEILR
DLPDGLVLGPDGLPIAGGAGG*
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mRNA from alignment at P-fluviatile_contig14:152408..155709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2007.1 ID=mRNA_P-fluviatile_contig14.2007.1|Name=mRNA_P-fluviatile_contig14.2007.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3302bp|location=Sequence derived from alignment at P-fluviatile_contig14:152408..155709+ (Porterinema fluviatile SAG_2381)
TTCAGCGCTATACGGAGAGGGGACCTCGCAGAGGTGAAGCGCTTTCTGGA
TAATGGTGGAAATATAGAGACGATCGGTGGTCGATTTCATTCGACCTTGC
TGACGGAGGCCTGCCGCTTCCGGGCTACTAAGGTGGTCGACCTGCTTCTC
GATCGGGGCGCCGCCGCCAACGCTCGTGGCGGCGGCTTTTGGACGCCGCT
TCATTACGCCTGCTCGTCGGACGGTTCGGCGACTGCTGCGGCGGCATTGG
TATCAAAATTGCTGCAACATCACGCGGAGGTTGACGCCACAGACTTCGTG
GTGAGTTGGCTTTTGCTCAATTTCTGCATGCATACTCGTCCTATCACTTT
CCCTGCTCTTCCCCGCTCACTTTCTGTTCTTGCCATCCACAGCGGCACGC
TGCCAATCTTTTGCTTTCCCTCATTAAAACGTGGGTTCCGATTGTAAGCG
CACGTACTCTCTATCATAGACCATGTAAATATTTACTCCGACAGCAGCAG
TGATCAACCTCTGTGGCTGCTTGGGAAGTGAGCCGTCTATCGACTACACC
CGGGTCAGCAACCAACAAACAGTTTTGTGTGCAATGGTGTATCCTATAGG
GTACCTCTTTGTCTGACTTTGCAGTAACGAGTTCACTCACAGTCAATGTG
TTTGATAAAGGCTTATTTTTTTTTACCACTCAGTCAGCGCTGACTGAGTA
GTCAAATGGATAAGCCTTTATGAAACACAATGTACACCTTTGTCTGGTCC
CTTCTGTATCCGGACTTGGGCAATGCGTGCCTCAACTTTGAAAACCGCCG
CGCTACGACGTAACGCGGCCTCCTTCTGACAACCCGACCTTTTCCCTGGT
CCATTCCCTGGCCGTCGACTTGAACCCAGACGACAGCAGTGTTCTTGGGC
CTAAGGCAGGTAGGTTTATTGTCACTGCTGCGGGCAAAAAAAACAGTTGG
GTATATCAAGTTCTGGGTTGGTTATTCCGCAGCTTGTCATCTAGTCTAAA
CCCCCTCGTGACCTTTTCTGGCCACTTCCTCCTTTGGTTTTCCTCGTTTT
TCCCCACGTCTTGTCATCGTGTTCTCGGTTGGCGATTCCCGAAATGAAGC
TCCCTGGTCGACCGAATCCTGACCTTTTCCCTCCTGTTTTTTTCTGATTT
CGCCCCAAATCTTGTTTCATGACCTATTCAATTTTCAATTGCTGAAGGGG
AGGACGCCGCTCCACCTCTCCTGCGCAAAAGGTTTCGCCGCAGCGGCGCT
TGTACTTCTGGAGGCCGGTGGGTTTTTTATGAGGACGGAACGTAGCTGGG
AGTAGTAGATGTAATCTCCACCACCACTTGACATCAGATATTCTCGAAGC
ACAGCCGCCCTCGGATGTGCTGCATTAAATGGAGTCAATGGCGAGAACCA
CCGGCGCTTTGTGCTAGTAGGTCCGGGTCTCTGCGTGCTCAAGCCATGCT
TCCTTGCTCTTGTGCATTTCTGCATGAGGTGCGGGGTGCATACCCTCGAC
CGTCAATTCCTTCTTGCGCACGGCGCTTGCAAGCGAGGAACGTTCCATAT
TTTTCTCTTTCTCAAGGCTTGAAGCGGGCGGGCTTCGGCGATTTGTGATG
ATGTTGAGGAACGACCGACTCACCACCGCCACGGCGACCCTCCGGCCATC
AACTTCCCACCATCTGCCCCCTTGTCAACGATGGCTCATTCACTTCTCAG
GCGCCGAGCCGAACGCCGCAGACAACGACGGCCGTACTCCCGTTCACCAC
GCGGCGTCCTACGGCCGGCGGGAGGCGATCGCCGTACTGCTGAGCTTCGG
CGGGGACACGTCGGCGGTGGATCGAGAGTTGGACACCCCCCTGCACCTCG
CGACGCGAGGCAGGCACAGGCTCGCAATGAGCCTCCTGGAGGGCGCCGGA
GCGGACCCGGAAGCGGCGAACTGCTGGGGCTTGCTCGCCGGGACCTTGGC
ACCAGGCTACAAGATGAATCCGCGGCTTCAAGGGGACGACGGTGATGACG
GTATTGGTGTGGCGGTCCCTGGGTGGTGTTCTTGGGCGGTAATGGCGGCG
GTGTTCTACGTGATTTTTGGGGTGTTGCCAATGTTTCCCAACTTACCCCG
TGTGCAAGCCGTTGGCTGAAACGAAAAATGCCGGGCCCCGACATTTTTCG
CATGTCTACTGGACAGTTACGAACAACCTTTCAATAGATCTGTCCGCCGA
CTTTATTTACAAGCCAGCAGATCCGTTCGCCATCACTCCCAAAGGAGAGT
TATCATGTACTCATTTCGAATCGTCAAGCAGTCAAATTTCTCGTGCCTGC
GGCCAGGCCTCTCCGTCCAGCGCTTGCCTGCCAGCGTTGGAAGTCCCTTC
ACGAGCGAGCGCAGCTGTTCCTCCACGCCATGCTCTTAGCTTTAACAGTA
AAAAGTCGAAGCAGTGATTTATCTTAGGATCGCTTCGCTGAAGTGTGGTG
ACGCAAGCCACCGACACCTTACGTTCGTTTTCACTGCTCATGAGGCCCTG
TCCGTTGCTCGTTCGTACTCGAGTCCTACCCCCGATCGTACCGATCTGCT
TGAGCGGGCCGGTAAATTTTCCGGCACCACCTTATTATTCAGCTGCACGA
TCCGAAGCCGTTTGTGTATGCAATTGGAAGAACGACGGACAAAATATGTG
GAGCCGTCGCTTATCTCTTTACGGCTTGATCGGCAACGAAAATCCGACAT
TCTCCTCCCAACTTGCGAAGAAGTCAGGGTCCTTCCGCTGACGACGACTA
CGCCCACGCACCACACACGCTGAAGGGATCCGTCTTCGCTCGCCGCAGTA
TAATATCTGCTTCGATTGGGCGTATTCCCGGAAATCTCCACACAAGAAGC
GCGTGAATCGTGGACTTCTAACGAGTGGCTTGATCGTGGAAAATCATTCA
ACATACCTTCATCGTCGACCTGAAGGTGGTATTTCTCGTTTCCGATGTTT
TTTCATCGCTCTGCCATCCCTGCTTGTGATGCGCGTGTGTGTCACTGCCC
TAACGGTAAGCCTCCGCCAGCCACACTATTTTCCCTCTATTGGCACCTCA
ATGCAATCACCCGCGCAGCTGGCACAGCTTTGATTTCCCCTGATTTCTTG
TGACGCGCCTAAAGCCCCTACTAGGCAGCACCGGAGAGACCAGCGGCACC
GCGAAGACGCGGCCGCGGGCGCCTGCGTGGCGTGCTCAGCGAAGAAAGGT
TTCCACTATTACTTCTGCAAGACCGAGATTCTGCGGGACTTGCCCGACGG
CTTGGTGCTCGGCCCGGACGGACTACCGATAGCAGGAGGCGCGGGGGGTT
GA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:152408..155709+

>mRNA_P-fluviatile_contig14.2007.1 ID=mRNA_P-fluviatile_contig14.2007.1|Name=mRNA_P-fluviatile_contig14.2007.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1632bp|location=Sequence derived from alignment at P-fluviatile_contig14:152408..155709+ (Porterinema fluviatile SAG_2381)
TTCAGCGCTATACGGAGAGGGGACCTCGCAGAGGTGAAGCGCTTTCTGGA
TAATGGTGGAAATATAGAGACGATCGGTGGTCGATTTCATTCGACCTTGC
TGACGGAGGCCTGCCGCTTCCGGGCTACTAAGGTGGTCGACCTGCTTCTC
GATCGGGGCGCCGCCGCCAACGCTCGTGGCGGCGGCTTTTGGACGCCGCT
TCATTACGCCTGCTCGTCGGACGGTTCGGCGACTGCTGCGGCGGCATTGG
TATCAAAATTGCTGCAACATCACGCGGAGGTTGACGCCACAGACTTCGTG
TTCAGCGCTATACGGAGAGGGGACCTCGCAGAGGTGAAGCGCTTTCTGGA
TAATGGTGGAAATATAGAGACGATCGGTGGTCGATTTCATTCGACCTTGC
TGACGGAGGCCTGCCGCTTCCGGGCTACTAAGGTGGTCGACCTGCTTCTC
GATCGGGGCGCCGCCGCCAACGCTCGTGGCGGCGGCTTTTGGACGCCGCT
TCATTACGCCTGCTCGTCGGACGGTTCGGCGACTGCTGCGGCGGCATTGG
TATCAAAATTGCTGCAACATCACGCGGAGGTTGACGCCACAGACTTCGTG
GGGAGGACGCCGCTCCACCTCTCCTGCGCAAAAGGTTTCGCCGCAGCGGC
GCTTGTACTTCTGGAGGCCGGGGAGGACGCCGCTCCACCTCTCCTGCGCA
AAAGGTTTCGCCGCAGCGGCGCTTGTACTTCTGGAGGCCGGCGCCGAGCC
GAACGCCGCAGACAACGACGGCCGTACTCCCGTTCACCACGCGGCGTCCT
ACGGCCGGCGGGAGGCGATCGCCGTACTGCTGAGCTTCGGCGGGGACACG
TCGGCGGTGGATCGAGAGTTGGACACCCCCCTGCACCTCGCGACGCGAGG
CAGGCACAGGCTCGCAATGAGCCTCCTGGAGGGCGCCGGAGCGGACCCGG
AAGCGGCGAACTGCTGGGGCTTGCTCGCCGGGACCTTGGCACCAGGCTAC
AAGATGAATCCGCGGCTTCAAGGGGACGACGGTGATGACGGCGCCGAGCC
GAACGCCGCAGACAACGACGGCCGTACTCCCGTTCACCACGCGGCGTCCT
ACGGCCGGCGGGAGGCGATCGCCGTACTGCTGAGCTTCGGCGGGGACACG
TCGGCGGTGGATCGAGAGTTGGACACCCCCCTGCACCTCGCGACGCGAGG
CAGGCACAGGCTCGCAATGAGCCTCCTGGAGGGCGCCGGAGCGGACCCGG
AAGCGGCGAACTGCTGGGGCTTGCTCGCCGGGACCTTGGCACCAGGCTAC
AAGATGAATCCGCGGCTTCAAGGGGACGACGGTGATGACGACGCGGCCGC
GGGCGCCTGCGTGGCGTGCTCAGCGAAGAAAGGTTTCCACTATTACTTCT
GCAAGACCGAGATTCTGCGGGACTTGCCCGACGGCTTGGTGCTCGGCCCG
GACGGACTACCGATAGCAGGAGGCGCGGGGGGTTGAACGCGGCCGCGGGC
GCCTGCGTGGCGTGCTCAGCGAAGAAAGGTTTCCACTATTACTTCTGCAA
GACCGAGATTCTGCGGGACTTGCCCGACGGCTTGGTGCTCGGCCCGGACG
GACTACCGATAGCAGGAGGCGCGGGGGGTTGA
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