mRNA_P-fluviatile_contig14.2266.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2266.1
Unique NamemRNA_P-fluviatile_contig14.2266.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2301918..2302393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size476
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1123936-CDS-P-fluviatile_contig14:2301917..23022261622815591.1123936-CDS-P-fluviatile_contig14:2301917..2302226Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2301918..2302226 +
1693562368.0804398-CDS-P-fluviatile_contig14:2301917..23022261693562368.0804398-CDS-P-fluviatile_contig14:2301917..2302226Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2301918..2302226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1291807-UTR-P-fluviatile_contig14:2302226..23023931622815591.1291807-UTR-P-fluviatile_contig14:2302226..2302393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2302227..2302393 +
1693562368.0921917-UTR-P-fluviatile_contig14:2302226..23023931693562368.0921917-UTR-P-fluviatile_contig14:2302226..2302393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2302227..2302393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2266.1prot_P-fluviatile_contig14.2266.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2301918..2302226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2266.1

>prot_P-fluviatile_contig14.2266.1 ID=prot_P-fluviatile_contig14.2266.1|Name=mRNA_P-fluviatile_contig14.2266.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
SSTQSDAGRGRCSITTNPASLSSTLWRRNYRTHNKGEVNAGSILDFTAHP
ATMQIVRSTTPNNQSRIVLTPSHPARQTLHRHPPHARCIRDTDPSNFARQ
TS*
back to top

mRNA from alignment at P-fluviatile_contig14:2301918..2302393+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2266.1 ID=mRNA_P-fluviatile_contig14.2266.1|Name=mRNA_P-fluviatile_contig14.2266.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=476bp|location=Sequence derived from alignment at P-fluviatile_contig14:2301918..2302393+ (Porterinema fluviatile SAG_2381)
TCTTCTACGCAGTCTGATGCTGGTCGCGGACGATGCAGCATCACAACGAA
CCCTGCGTCCTTATCCTCAACCCTATGGCGCCGGAACTACCGCACACACA
ATAAAGGCGAAGTAAATGCTGGTTCGATTTTGGACTTCACGGCCCATCCG
GCCACAATGCAGATAGTAAGAAGTACAACACCGAACAACCAAAGTCGGAT
CGTTTTGACCCCCTCACACCCTGCCCGGCAAACGCTCCACCGGCACCCGC
CACATGCACGTTGCATTAGAGACACCGATCCCTCAAACTTCGCAAGGCAA
ACGTCGTAAATTAACCCCCACACTAACAAATAGAATATTTTTACCGTCAT
ACCCAACTTGCTGGTTGGGGCAGCAGCAGCAGCAGCATCTTTTCCTCAAT
ACGACGCGAGGCGAAGCCGACGACTAGGCTCGTAATCCGTAGTCAATTGA
CTGATTTTTTCGAGGGGGTAGGAGAT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:2301918..2302393+

>mRNA_P-fluviatile_contig14.2266.1 ID=mRNA_P-fluviatile_contig14.2266.1|Name=mRNA_P-fluviatile_contig14.2266.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig14:2301918..2302393+ (Porterinema fluviatile SAG_2381)
TCTTCTACGCAGTCTGATGCTGGTCGCGGACGATGCAGCATCACAACGAA
CCCTGCGTCCTTATCCTCAACCCTATGGCGCCGGAACTACCGCACACACA
ATAAAGGCGAAGTAAATGCTGGTTCGATTTTGGACTTCACGGCCCATCCG
GCCACAATGCAGATAGTAAGAAGTACAACACCGAACAACCAAAGTCGGAT
CGTTTTGACCCCCTCACACCCTGCCCGGCAAACGCTCCACCGGCACCCGC
CACATGCACGTTGCATTAGAGACACCGATCCCTCAAACTTCGCAAGGCAA
ACGTCGTAATCTTCTACGCAGTCTGATGCTGGTCGCGGACGATGCAGCAT
CACAACGAACCCTGCGTCCTTATCCTCAACCCTATGGCGCCGGAACTACC
GCACACACAATAAAGGCGAAGTAAATGCTGGTTCGATTTTGGACTTCACG
GCCCATCCGGCCACAATGCAGATAGTAAGAAGTACAACACCGAACAACCA
AAGTCGGATCGTTTTGACCCCCTCACACCCTGCCCGGCAAACGCTCCACC
GGCACCCGCCACATGCACGTTGCATTAGAGACACCGATCCCTCAAACTTC
GCAAGGCAAACGTCGTAA
back to top