mRNA_P-fluviatile_contig14.2084.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2084.1
Unique NamemRNA_P-fluviatile_contig14.2084.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:833824..834545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.6733086-CDS-P-fluviatile_contig14:833823..8341911622815588.6733086-CDS-P-fluviatile_contig14:833823..834191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 833824..834191 -
1693562363.4218721-CDS-P-fluviatile_contig14:833823..8341911693562363.4218721-CDS-P-fluviatile_contig14:833823..834191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 833824..834191 -
1622815588.685708-CDS-P-fluviatile_contig14:834454..8345451622815588.685708-CDS-P-fluviatile_contig14:834454..834545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 834455..834545 -
1693562363.4298496-CDS-P-fluviatile_contig14:834454..8345451693562363.4298496-CDS-P-fluviatile_contig14:834454..834545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 834455..834545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2084.1prot_P-fluviatile_contig14.2084.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 833824..834545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2084.1

>prot_P-fluviatile_contig14.2084.1 ID=prot_P-fluviatile_contig14.2084.1|Name=mRNA_P-fluviatile_contig14.2084.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
MLVAIPFLFAQQQTTADAFVSNAVPSSVAQESSVAGCQRRWHQSPSPFSS
YPVSSRRAVDRRSAADSGGGSSKNDGLHHSFCDDPIGNDRVGDDVQHRRR
RGAKRRDPEGGRENRSGHDGMISQQASLAEENAIAISRRGVLEGLLAGLL
LVG
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mRNA from alignment at P-fluviatile_contig14:833824..834545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2084.1 ID=mRNA_P-fluviatile_contig14.2084.1|Name=mRNA_P-fluviatile_contig14.2084.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=722bp|location=Sequence derived from alignment at P-fluviatile_contig14:833824..834545- (Porterinema fluviatile SAG_2381)
ATGCTGGTAGCGATCCCGTTCCTGTTTGCGCAGCAGCAGACAACCGCGGA
TGCCTTCGTGTCGAATGCGGTGCCGTCATCGGTCGCCCAAGGTACGGTAG
AAAGCACCCCCTGTAACAGACACACAAGGGTGTTCAGCATGCGCTGCTAC
ACCGTGCAGTTGCTGCTACCACCTGCTGCACGTCACATACCGTCACACGC
GTACAGTGCAGTTGTTGTGCTCAGTAGCTCTTGCAGGTGCCAGCTCAAGC
AGCTTCCGTGAGAGCGAAGAGACTGGCCAATGCCGTACGTGAAGCTTATA
TTCTGTCCCTCATGCGCACGAATGCCGCTGTCTTGTGCGTGCGTTTCCAT
CCAGAGTCCTCGGTCGCAGGCTGCCAACGGCGATGGCACCAGTCACCCTC
TCCGTTTTCTTCGTACCCCGTATCCTCCAGACGCGCCGTGGACCGCCGTT
CTGCTGCAGACAGCGGCGGTGGCAGCAGCAAGAACGACGGACTCCACCAC
AGCTTTTGCGACGACCCCATCGGTAACGACCGCGTCGGCGACGACGTCCA
GCATCGGCGGCGGCGGGGGGCAAAACGGCGGGATCCGGAGGGGGGGCGCG
AGAATAGAAGCGGCCATGACGGGATGATCAGCCAGCAGGCATCCCTCGCG
GAGGAAAACGCGATCGCAATTTCTCGCCGAGGCGTGTTGGAAGGCTTGTT
GGCGGGGCTGCTGCTGGTGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:833824..834545-

>mRNA_P-fluviatile_contig14.2084.1 ID=mRNA_P-fluviatile_contig14.2084.1|Name=mRNA_P-fluviatile_contig14.2084.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig14:833824..834545- (Porterinema fluviatile SAG_2381)
ATGCTGGTAGCGATCCCGTTCCTGTTTGCGCAGCAGCAGACAACCGCGGA
TGCCTTCGTGTCGAATGCGGTGCCGTCATCGGTCGCCCAAGATGCTGGTA
GCGATCCCGTTCCTGTTTGCGCAGCAGCAGACAACCGCGGATGCCTTCGT
GTCGAATGCGGTGCCGTCATCGGTCGCCCAAGAGTCCTCGGTCGCAGGCT
GCCAACGGCGATGGCACCAGTCACCCTCTCCGTTTTCTTCGTACCCCGTA
TCCTCCAGACGCGCCGTGGACCGCCGTTCTGCTGCAGACAGCGGCGGTGG
CAGCAGCAAGAACGACGGACTCCACCACAGCTTTTGCGACGACCCCATCG
GTAACGACCGCGTCGGCGACGACGTCCAGCATCGGCGGCGGCGGGGGGCA
AAACGGCGGGATCCGGAGGGGGGGCGCGAGAATAGAAGCGGCCATGACGG
GATGATCAGCCAGCAGGCATCCCTCGCGGAGGAAAACGCGATCGCAATTT
CTCGCCGAGGCGTGTTGGAAGGCTTGTTGGCGGGGCTGCTGCTGGTGGGG
AGTCCTCGGTCGCAGGCTGCCAACGGCGATGGCACCAGTCACCCTCTCCG
TTTTCTTCGTACCCCGTATCCTCCAGACGCGCCGTGGACCGCCGTTCTGC
TGCAGACAGCGGCGGTGGCAGCAGCAAGAACGACGGACTCCACCACAGCT
TTTGCGACGACCCCATCGGTAACGACCGCGTCGGCGACGACGTCCAGCAT
CGGCGGCGGCGGGGGGCAAAACGGCGGGATCCGGAGGGGGGGCGCGAGAA
TAGAAGCGGCCATGACGGGATGATCAGCCAGCAGGCATCCCTCGCGGAGG
AAAACGCGATCGCAATTTCTCGCCGAGGCGTGTTGGAAGGCTTGTTGGCG
GGGCTGCTGCTGGTGGGG
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