mRNA_P-fluviatile_contig13.1987.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1987.1
Unique NamemRNA_P-fluviatile_contig13.1987.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.030e-51
Identity = 91/100 (91.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV S+EQHADILTKAL RDLFEVHRDFALG RK
Sbjct:  159 VKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSRK 258
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 8.560e-51
Identity = 97/111 (87.39%), Postives = 98/111 (88.29%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK*KSESFVFVFF 334
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV SEEQHADILTKAL RDLFEVHRDFALG RK KS  F+F  F
Sbjct: 1128 VKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSRKYKSVFFIFCLF 1238
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.780e-49
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VKE+LFVNGMLQFLRPS +PR IDV EDNEG IALAENPLSS RSKHIDVRHHFLRNLTEEGVIE+ HV SE+QHADILTKAL R +FEVHRDFALG RK
Sbjct:  141 VKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALPRSIFEVHRDFALGSRK 240
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.250e-48
Identity = 93/103 (90.29%), Postives = 93/103 (90.29%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK*KS 310
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV SEEQHADILTKAL RDLFEVHRDF LG RK KS
Sbjct:  396 VKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLGSRKYKS 498
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.270e-48
Identity = 88/100 (88.00%), Postives = 89/100 (89.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VK+ALFVNGMLQFLRPS  PR IDV EDNE  IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV SEEQHADILTKAL RDLFEVHRDF LG RK
Sbjct:  230 VKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLGSRK 329
[Close]
BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.530e-48
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALG 292
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV S+ QHADILTKAL R+LFEVHRDF LG
Sbjct:  191 VKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKALPRNLFEVHRDFVLG 287
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BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.180e-47
Identity = 91/100 (91.00%), Postives = 91/100 (91.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV SEEQHADILTKAL RDLFEVHRDF LG RK
Sbjct:  861 VKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFGLGSRK 960
[Close]
BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.590e-47
Identity = 91/100 (91.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV S+EQHADILTKAL RDLFEVHRDFALG RK
Sbjct: 1092 VKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSRK 1191
[Close]
BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.660e-47
Identity = 91/100 (91.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK 301
            VKEALFVNGMLQFLRPS KPR IDV EDNEG IALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV HV S+EQHADILTKAL RDLFEVHRDFALG RK
Sbjct: 1302 VKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSRK 1401
[Close]
BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Match: A0A6H5KKB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB7_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 8.550e-47
Identity = 83/97 (85.57%), Postives = 85/97 (87.63%), Query Frame = 2 
Query:    2 VKEALFVNGMLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALG 292
            VKEALFVNGMLQFLRPS K R IDV EDNE  IALAENPLSSS SKHIDVRHHFLRNLTEEGVIEV HV S+EQHADI TKAL R+LFEVHRDF LG
Sbjct:    5 VKEALFVNGMLQFLRPSAKTRKIDVVEDNERAIALAENPLSSSWSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADIRTKALPRNLFEVHRDFVLG 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCG6_9PHAE1.030e-5191.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE8.560e-5187.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5J8M4_9PHAE8.780e-4985.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE1.250e-4890.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBM6_9PHAE1.270e-4888.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTP8_9PHAE7.530e-4888.66Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE1.180e-4791.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3I1_9PHAE2.590e-4791.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.660e-4791.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB7_9PHAE8.550e-4785.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3435951..3436656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog4565.Traes_7DS_A62A567C4.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size706
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1987.1prot_P-fluviatile_contig13.1987.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3435979..3436254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.28857-UTR-P-fluviatile_contig13:3435950..34359781622815588.28857-UTR-P-fluviatile_contig13:3435950..3435978Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3435951..3435978 +
1693562363.2320943-UTR-P-fluviatile_contig13:3435950..34359781693562363.2320943-UTR-P-fluviatile_contig13:3435950..3435978Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3435951..3435978 +
1622815588.3150847-UTR-P-fluviatile_contig13:3436254..34366561622815588.3150847-UTR-P-fluviatile_contig13:3436254..3436656Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3436255..3436656 +
1693562363.2509704-UTR-P-fluviatile_contig13:3436254..34366561693562363.2509704-UTR-P-fluviatile_contig13:3436254..3436656Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3436255..3436656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.3003705-CDS-P-fluviatile_contig13:3435978..34362541622815588.3003705-CDS-P-fluviatile_contig13:3435978..3436254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3435979..3436254 +
1693562363.243136-CDS-P-fluviatile_contig13:3435978..34362541693562363.243136-CDS-P-fluviatile_contig13:3435978..3436254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3435979..3436254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1987.1

>prot_P-fluviatile_contig13.1987.1 ID=prot_P-fluviatile_contig13.1987.1|Name=mRNA_P-fluviatile_contig13.1987.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=92bp
MLQFLRPSRKPRNIDVREDNEGTIALAENPLSSSRSKHIDVRHHFLRNLT
EEGVIEVKHVRSEEQHADILTKALQRDLFEVHRDFALGIRK*
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mRNA from alignment at P-fluviatile_contig13:3435951..3436656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1987.1 ID=mRNA_P-fluviatile_contig13.1987.1|Name=mRNA_P-fluviatile_contig13.1987.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=706bp|location=Sequence derived from alignment at P-fluviatile_contig13:3435951..3436656+ (Porterinema fluviatile SAG_2381)
TGTGAAGGAAGCTCTGTTTGTGAATGGAATGCTTCAGTTCCTGAGGCCAA
GTAGGAAGCCTCGTAATATCGACGTCCGTGAGGACAACGAAGGCACGATA
GCACTAGCAGAGAATCCACTTAGCTCAAGTAGGAGTAAGCACATCGACGT
GAGGCACCACTTCCTTAGGAATTTGACCGAGGAGGGTGTGATCGAGGTCA
AACATGTTCGCAGTGAGGAGCAGCATGCGGACATCCTCACGAAGGCTTTG
CAGAGAGATCTTTTCGAAGTTCACCGCGACTTTGCACTTGGTATCAGGAA
GTAGAAGTCTGAGTCGTTTGTTTTTGTTTTCTTTCGATATATATTTGGTC
TGGTAGATACAACAGCCCCTAGGGAGGGTGTTCGTGATAGAGGCTGCTGT
CTCGTCTGAATCACGGACCAATCTGATTGGACTTTTTGATTGGCGGGACC
GTCATATGACTGATTGTGGATTTCCCGAAGACGAGTTGTAGAATGTTCAC
CAAACTTTCTGTCGGTGATATAGGAACATTGCTTGGGGTCGATGCATTGA
TCCGAGCATACTGTTTATGGTTTGTCTTTTATTCCGATGTATTTGTGGCT
TGTTGGTAGTGTACAATGGTCCGTGATCGGGTAATCGGGGTATCCTGGTG
TGATCCGTGATCGGGGTATTGCAGAAGGGCGTTGTACTCCCTTCCCTCTG
GACACT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3435951..3436656+

>mRNA_P-fluviatile_contig13.1987.1 ID=mRNA_P-fluviatile_contig13.1987.1|Name=mRNA_P-fluviatile_contig13.1987.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=552bp|location=Sequence derived from alignment at P-fluviatile_contig13:3435951..3436656+ (Porterinema fluviatile SAG_2381)
ATGCTTCAGTTCCTGAGGCCAAGTAGGAAGCCTCGTAATATCGACGTCCG
TGAGGACAACGAAGGCACGATAGCACTAGCAGAGAATCCACTTAGCTCAA
GTAGGAGTAAGCACATCGACGTGAGGCACCACTTCCTTAGGAATTTGACC
GAGGAGGGTGTGATCGAGGTCAAACATGTTCGCAGTGAGGAGCAGCATGC
GGACATCCTCACGAAGGCTTTGCAGAGAGATCTTTTCGAAGTTCACCGCG
ACTTTGCACTTGGTATCAGGAAGTAGATGCTTCAGTTCCTGAGGCCAAGT
AGGAAGCCTCGTAATATCGACGTCCGTGAGGACAACGAAGGCACGATAGC
ACTAGCAGAGAATCCACTTAGCTCAAGTAGGAGTAAGCACATCGACGTGA
GGCACCACTTCCTTAGGAATTTGACCGAGGAGGGTGTGATCGAGGTCAAA
CATGTTCGCAGTGAGGAGCAGCATGCGGACATCCTCACGAAGGCTTTGCA
GAGAGATCTTTTCGAAGTTCACCGCGACTTTGCACTTGGTATCAGGAAGT
AG
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