mRNA_P-fluviatile_contig13.1956.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1956.1
Unique NamemRNA_P-fluviatile_contig13.1956.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3098222..3099515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size641
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1956.1prot_P-fluviatile_contig13.1956.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3098222..3099366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4839303-CDS-P-fluviatile_contig13:3098221..30984701622815585.4839303-CDS-P-fluviatile_contig13:3098221..3098470Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3098222..3098470 -
1693562353.2261672-CDS-P-fluviatile_contig13:3098221..30984701693562353.2261672-CDS-P-fluviatile_contig13:3098221..3098470Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3098222..3098470 -
1622815585.499341-CDS-P-fluviatile_contig13:3099123..30993661622815585.499341-CDS-P-fluviatile_contig13:3099123..3099366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3099124..3099366 -
1693562353.2339547-CDS-P-fluviatile_contig13:3099123..30993661693562353.2339547-CDS-P-fluviatile_contig13:3099123..3099366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3099124..3099366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.5090356-UTR-P-fluviatile_contig13:3099366..30995151622815585.5090356-UTR-P-fluviatile_contig13:3099366..3099515Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3099367..3099515 -
1693562353.2416372-UTR-P-fluviatile_contig13:3099366..30995151693562353.2416372-UTR-P-fluviatile_contig13:3099366..3099515Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3099367..3099515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1956.1

>prot_P-fluviatile_contig13.1956.1 ID=prot_P-fluviatile_contig13.1956.1|Name=mRNA_P-fluviatile_contig13.1956.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=164bp
MTRFTRRALACGYFRVLRVLLLCLVAVSSLERNCCCNHPSTQQQAFVAPP
VKVADGLSATTGRGLSRQDVTAAGPGRDRRKLLPPLLGPDGSHDSLAQPQ
SGPDGVGGGGSNHRRSRSRSSGGRAPCRRVAGPAPWTRRASAVAAAWAAP
HGTGEEEVAATAAR
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mRNA from alignment at P-fluviatile_contig13:3098222..3099515-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1956.1 ID=mRNA_P-fluviatile_contig13.1956.1|Name=mRNA_P-fluviatile_contig13.1956.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-fluviatile_contig13:3098222..3099515- (Porterinema fluviatile SAG_2381)
AGTTGTACTCCTTTGGATCACTGTGTGGAGCATATGCAAGCACTGCTCAC
CATGCAGAGCCAATAGGCCAGTCAATCTCAGCAAGAAGCTGACAGTTGCA
GCTGCCACTTTCCCGGAGCAGCGGGCGGCAATCGAAGAACAACAACATCA
TGACTCGATTCACCCGACGTGCCCTCGCCTGCGGCTACTTCCGCGTGCTA
CGAGTGCTCCTGCTTTGCCTGGTGGCGGTGTCGTCCTTGGAGCGAAACTG
CTGCTGCAACCACCCATCGACGCAGCAGCAGGCTTTCGTGGCGCCACCGG
TGAAGGTTGCTGATGGTTTGTCGGCGACTACCGGTCGCGGCCTCAGCCGG
CAAGATGTGACCGCAGCTGGACCAGGCCGAGATCGTCGGAAGGTGCGGGA
GAAAGCGAGTCTTTTCATGTGTCCAGAGAGGGGTCAGTGGATGCTGCTAC
TTTCCAAAACCAACTGCACAAGGACCTGCCCAGTGTCAGGCTCCTCATGC
TCTAGCTTTGCATCTCTGGTATGAGAGTCGGAAAGGTGTGTGCATGTTTT
CCTAGCGTTGAAGTCCACTTCGCGAGCCAGCAAGTCTTGGTCGAAACACT
CCAAACACGGGGCTGCGAGACCCATCTACAAGAGTTAGTGAAGCAGCGGC
AACGTGAACGAAGGCACTGCCCTTGTGAGGCAAGACTAGGGATCCCCGCA
GGGATCCTGACATACGAGGTTCAAATGCAGACTACGGGCCCCAGAATAAG
CGGCCGAGCTCGAACACACACCACGAGGTGAACCAGGTCGAACAGTATTC
TTGTGGGGGGAGGAGGATGGTACTGGCCCTCACACCGGGCCCAGCTTGCC
GCCGTTTGTCGGGATGCAGAGCAGCACTAAGCACAAGCCAGCGATGTACC
TGTCCGTTCGATGACGTCGATATTTGCGCAATGCCCCCCCCTGCCGTTCC
CCCGCCCCCCCCCGCATAGTCTCATTAGCTGCTGCCGCCGCCGCCTTCCC
ACCTCAAAACTCTCTTTCCGTCGTTGCATTGCAACGCATTTGCAGCTGCT
GCCACCGCTCCTCGGCCCAGACGGCTCGCACGATTCGCTAGCGCAGCCTC
AATCAGGGCCCGACGGCGTCGGAGGAGGAGGCAGCAATCACAGGCGCAGT
CGAAGCCGAAGCAGCGGTGGCCGTGCGCCTTGCCGGCGAGTGGCGGGACC
GGCGCCGTGGACTCGAAGGGCGTCGGCGGTGGCTGCGGCCTGGGCCGCTC
CTCACGGAACGGGCGAGGAAGAGGTGGCAGCAACGGCCGCGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3098222..3099515-

>mRNA_P-fluviatile_contig13.1956.1 ID=mRNA_P-fluviatile_contig13.1956.1|Name=mRNA_P-fluviatile_contig13.1956.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=984bp|location=Sequence derived from alignment at P-fluviatile_contig13:3098222..3099515- (Porterinema fluviatile SAG_2381)
ATGACTCGATTCACCCGACGTGCCCTCGCCTGCGGCTACTTCCGCGTGCT
ACGAGTGCTCCTGCTTTGCCTGGTGGCGGTGTCGTCCTTGGAGCGAAACT
GCTGCTGCAACCACCCATCGACGCAGCAGCAGGCTTTCGTGGCGCCACCG
GTGAAGGTTGCTGATGGTTTGTCGGCGACTACCGGTCGCGGCCTCAGCCG
GCAAGATGTGACCGCAGCTGGACCAGGCCGAGATCGTCGGAAGATGACTC
GATTCACCCGACGTGCCCTCGCCTGCGGCTACTTCCGCGTGCTACGAGTG
CTCCTGCTTTGCCTGGTGGCGGTGTCGTCCTTGGAGCGAAACTGCTGCTG
CAACCACCCATCGACGCAGCAGCAGGCTTTCGTGGCGCCACCGGTGAAGG
TTGCTGATGGTTTGTCGGCGACTACCGGTCGCGGCCTCAGCCGGCAAGAT
GTGACCGCAGCTGGACCAGGCCGAGATCGTCGGAAGCTGCTGCCACCGCT
CCTCGGCCCAGACGGCTCGCACGATTCGCTAGCGCAGCCTCAATCAGGGC
CCGACGGCGTCGGAGGAGGAGGCAGCAATCACAGGCGCAGTCGAAGCCGA
AGCAGCGGTGGCCGTGCGCCTTGCCGGCGAGTGGCGGGACCGGCGCCGTG
GACTCGAAGGGCGTCGGCGGTGGCTGCGGCCTGGGCCGCTCCTCACGGAA
CGGGCGAGGAAGAGGTGGCAGCAACGGCCGCGCGGCTGCTGCCACCGCTC
CTCGGCCCAGACGGCTCGCACGATTCGCTAGCGCAGCCTCAATCAGGGCC
CGACGGCGTCGGAGGAGGAGGCAGCAATCACAGGCGCAGTCGAAGCCGAA
GCAGCGGTGGCCGTGCGCCTTGCCGGCGAGTGGCGGGACCGGCGCCGTGG
ACTCGAAGGGCGTCGGCGGTGGCTGCGGCCTGGGCCGCTCCTCACGGAAC
GGGCGAGGAAGAGGTGGCAGCAACGGCCGCGCGG
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