mRNA_P-fluviatile_contig13.1935.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1935.1
Unique NamemRNA_P-fluviatile_contig13.1935.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 6.630e-89
Identity = 135/168 (80.36%), Postives = 150/168 (89.29%), Query Frame = 1 
Query:  346 GMPGSGPGCSTTTHPSYSIVTCERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTIDTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGMFMYQ 846
            GMPGSG GC+T+T+PSYS+V+C+RTGLDR+GRLLGCSSSENC+STSA K PGK+GSPWEYAM+TDDAD AFASLV AVE   E TMK +D +GHYILA+FPSKVPP SVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEG    DLGW M+ Y+
Sbjct:   99 GMPGSGLGCTTSTNPSYSLVSCDRTGLDRNGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDREGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGI-RNDLGWNMYTYR 265
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A835YK12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK12_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.050e-43
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 1 
Query:  367 GCSTTTHPSYSIVTCERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVE-GAPEVTMKTIDTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGW 828
            GC+T ++PS + VTC R GL RDGRL  C SSENCVS+S+ + P K  +PW YA +T DA  AF  L+  +     +  +  ++    YILA+FP+KVPP SVD VEFL++P D +  +RS +RD++F+YPLQQPVSD+G  ++RLE      LGW
Sbjct:    4 GCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAI-RNQLGW 158
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: W7TWW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWW3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.620e-36
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1 
Query:  370 CSTTTHPSYSIVTCERTGLDR-DGRLLGCSSSENCVS-TSAKQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTID--TKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGW 828
            C++ ++PS++IVTC+R G+D   GR   C S+ENC+S TS   P K  SPW +    +D   A+ SLVRAVE    + +  ID  +K +Y+ A+ PSKVPP  VD +EFL+ P+D +V +RS SR   FLYPL QPV D G IK+RLE T  + +GW
Sbjct:   97 CTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLE-TIQKAVGW 252
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A6V1S530_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S530_HETAK)

HSP 1 Score: 129 bits (325), Expect = 2.410e-32
Identity = 71/167 (42.51%), Postives = 100/167 (59.88%), Query Frame = 1 
Query:  370 CSTTTHPSYSIVT--CERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVE-GAPEVTMKTI--DTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGMFMYQEQ 852
            C   T+ +  + T  C R G DRDGRLLGC  +ENC+STSA K P K  +PW Y  QT   D A+ +LV   E  +  + +K +  D   +Y+    P+KVPP S D +EFL++P D+IVLYRS +RDT+ +YP QQ + + G+   RLE T    LGW +   +++
Sbjct:   99 CRQETNGASGVTTISCRRYGTDRDGRLLGCLPNENCLSTSAVKNPSKYAAPWTYYTQTASGDSAWRALVELAETDSLNLGLKVVEKDPSRYYLHLTAPAKVPPGSTDDLEFLLRPADKIVLYRSATRDTVLVYPFQQYLPEHGQTAGRLE-TIRDSLGWDILKQRDK 264
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A7S1IFF5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IFF5_9EUGL)

HSP 1 Score: 130 bits (326), Expect = 3.170e-32
Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 1 
Query:  370 CSTTTHPSYSIVTCERTGLDRDGRLLGCSSSENC-VSTSAKQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTIDTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGMFMY 843
            C+TT     SIV C R G  + GRLL CSSSENC  ST+   P +   PW+Y++ T+D  +AF  LV +V       +  +D   +YI A  PS VPP+S+D +EFL++P+D +V +R  +R ++F+YPL Q V DQG  K+RL     R LGW    Y
Sbjct:  148 CTTTLALPTSIVECVRFGTPQ-GRLLPCSSSENCSASTAVNSPSQFVPPWDYSIDTNDPHQAFKKLVESVSEEQGAMLIEVDESRYYIHATAPSAVPPTSLDDIEFLMRPDDSLVTHRVATRKSVFVYPLTQIVGDQGATKDRLNSIRER-LGWAELQY 304
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A7S2RG67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG67_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.110e-30
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1 
Query:  370 CSTTTHPSYSIVTCERTGLDRDGRLLGCSSSENCVSTSAKQPG-KMGSPWEYAMQTDDADRAFASL----VRAVEGAPEVTMKTIDTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGMFMYQE 849
            C TT++P ++  TC R GL  +GRL  C + ENC+STS+ Q   K   PW+Y  +T + DRA+ SL    ++ ++GA  V  + + T+  Y+    PS VPP+  D +EF++ P++++V +RS SR ++FL+PLQQPVSD G+   RL+   +  LGWG    ++
Sbjct:   74 CRTTSNPFFTTKTCYRVGLV-EGRLGKCLADENCMSTSSVQSASKYSPPWDYTPETLNPDRAWKSLKLALLQTIQGA-RVEAEDVSTERLYLHVTAPSAVPPAGTDDLEFVLDPKEKLVFFRSASRSSVFLFPLQQPVSDNGRHLSRLQNVRST-LGWGSLSLED 235
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A7S0AZ98_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZ98_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.620e-30
Identity = 69/164 (42.07%), Postives = 99/164 (60.37%), Query Frame = 1 
Query:  367 GCSTTTHPSYSIVTC--ERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTIDTKGHYILAQFPSKVPP-----SSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGM 834
            GC T T+PS ++VTC  E    + DGRL   S++ N VSTS+ + P +   PW Y  +T DA  A+ SL+  V  A E  ++ ++    Y+ A  P++ PP     + VD +EF++KPED +VLYRS SR ++F+YPL QPVSDQ    +RL     + LGWG+
Sbjct:   48 GCKTDTNPSRTVVTCYGELKKYNEDGRLSKISATANGVSTSSVRNPSRFSPPWNYVTETSDASAAWKSLINVVNTA-EPGIEIVELTDTYLHATAPTQSPPGLTGPAGVDDLEFILKPEDNLVLYRSASRTSVFVYPLTQPVSDQNTNLKRLNKIRNK-LGWGL 209
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A1E7FHJ7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.010e-29
Identity = 71/167 (42.51%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:  367 GCSTTTHPSYSIVTC--ERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTIDTKGHYILAQFPSKVPPS--SVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGWGMFMYQEQ 852
            GC T T+PS +IVTC  +    + DGRL   S++EN VSTS+ K P +   PW Y  +T DA RA+ SL  AV    + + + I+   +Y+ A  P+  PP    VD +EFL++P+D ++LYRS SR ++F+YPL QPVSD     +RL+    + LGW    YQ+Q
Sbjct:  155 GCITNTNPSRTIVTCRGDMQSNNPDGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLNVDQ-SCQIIELTDNYLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKI-RQSLGWEELGYQQQ 319
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A8J2WE71_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE71_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.640e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 1 
Query:  370 CSTTTHPSYSIVTCERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTMKTIDTKGHYILAQFPSKVP---PSSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQ----PVSDQGKIKERLEGTWTRDLGW 828
            C T     Y+  TCER G+ +DGRL GC  SENCVS+SA K P +  +PW ++  T DADRAF  LV+A + +P++ +   D    Y+ A  PS++     + VD VE L+  E  +V +RS SR+++F +P Q     P+ D G  + RLE    + LGW
Sbjct:   89 CRTKPGALYAERTCERYGIQKDGRLAGCLPSENCVSSSAIKSPAQFDAPWLFSPATRDADRAFEELVKAAQASPDLKIAETDPARRYLRATAPSQISNYKATDVDDVEVLISAEKGLVFHRSASRESVFFFPPQNIYSVPLGDNGSNRGRLEAL-RKALGW 248
[Close]
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Match: A0A7S2N0F5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0F5_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.570e-28
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:  367 GCSTTTHPSYSIVTC--ERTGLDRDGRLLGCSSSENCVSTSA-KQPGKMGSPWEYAMQTDDADRAFASLVRAVEGA-PEVTMKTIDTKGHYILAQFPSKVPP-----SSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGTWTRDLGW 828
            GC+TTT+PS + VTC  E    + DGRL   S++EN VSTS+ + P +   PW Y  +T DA  A+ SLV AV    P  T++ ++    Y+ A  P+  PP     + +D +EFL++PED +VLYRS SR ++F+YPL QPVSD+    +RL+   +  LGW
Sbjct:  128 GCTTTTNPSTTTVTCTGELRANNADGRLSKISATENGVSTSSVRNPSRFSPPWTYLTETSDARVAWKSLVSAVNRVEPGGTLQIVELTDSYLHATVPTVSPPGLLGEAGLDDIEFLLRPEDNLVLYRSASRTSVFVYPLTQPVSDRNSNLKRLQKIRSI-LGW 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT63_ECTSI6.630e-8980.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YK12_9STRA2.050e-4349.36Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7TWW3_9STRA6.620e-3647.77Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A6V1S530_HETAK2.410e-3242.51Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1IFF5_9EUGL3.170e-3243.40Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2RG67_9STRA3.110e-3040.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0AZ98_9STRA5.620e-3042.07Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7FHJ7_9STRA1.010e-2942.51Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A8J2WE71_9STRA2.640e-2840.37Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2N0F5_9STRA3.570e-2842.94Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2951562..2955502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog45157.CMI167CT
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG OGs28JPF@1,2QS2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-12_005390.1
Exons5
Model size855
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1935.1prot_P-fluviatile_contig13.1935.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2951562..2955502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.286057-CDS-P-fluviatile_contig13:2951561..29516811622815583.286057-CDS-P-fluviatile_contig13:2951561..2951681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2951562..2951681 +
1693562348.5415165-CDS-P-fluviatile_contig13:2951561..29516811693562348.5415165-CDS-P-fluviatile_contig13:2951561..2951681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2951562..2951681 +
1622815583.298078-CDS-P-fluviatile_contig13:2952202..29525371622815583.298078-CDS-P-fluviatile_contig13:2952202..2952537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2952203..2952537 +
1693562348.5528774-CDS-P-fluviatile_contig13:2952202..29525371693562348.5528774-CDS-P-fluviatile_contig13:2952202..2952537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2952203..2952537 +
1622815583.3106458-CDS-P-fluviatile_contig13:2953391..29535871622815583.3106458-CDS-P-fluviatile_contig13:2953391..2953587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2953392..2953587 +
1693562348.562178-CDS-P-fluviatile_contig13:2953391..29535871693562348.562178-CDS-P-fluviatile_contig13:2953391..2953587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2953392..2953587 +
1622815583.3233619-CDS-P-fluviatile_contig13:2954859..29550231622815583.3233619-CDS-P-fluviatile_contig13:2954859..2955023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2954860..2955023 +
1693562348.5714006-CDS-P-fluviatile_contig13:2954859..29550231693562348.5714006-CDS-P-fluviatile_contig13:2954859..2955023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2954860..2955023 +
1622815583.3427358-CDS-P-fluviatile_contig13:2955462..29555021622815583.3427358-CDS-P-fluviatile_contig13:2955462..2955502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2955463..2955502 +
1693562348.5807028-CDS-P-fluviatile_contig13:2955462..29555021693562348.5807028-CDS-P-fluviatile_contig13:2955462..2955502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2955463..2955502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1935.1

>prot_P-fluviatile_contig13.1935.1 ID=prot_P-fluviatile_contig13.1935.1|Name=mRNA_P-fluviatile_contig13.1935.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=285bp
MHSRSCLWSLCATTSWNLGPTMIRCLPATMLMLCASCGSEALISASVPTP
PWIATPAATTAFLPPYSAPAESTREVSALWGSMSASVGGGGVTIAGLSLA
LALSFALPAPSEADAGMPGSGPGCSTTTHPSYSIVTCERTGLDRDGRLLG
CSSSENCVSTSAKQPGKMGSPWEYAMQTDDADRAFASLVRAVEGAPEVTM
KTIDTKGHYILAQFPSKVPPSSVDSVEFLVKPEDQIVLYRSVSRDTLFLY
PLQQPVSDQGKIKERLEGTWTRDLGWGMFMYQEQ*
back to top

mRNA from alignment at P-fluviatile_contig13:2951562..2955502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1935.1 ID=mRNA_P-fluviatile_contig13.1935.1|Name=mRNA_P-fluviatile_contig13.1935.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3941bp|location=Sequence derived from alignment at P-fluviatile_contig13:2951562..2955502+ (Porterinema fluviatile SAG_2381)
ATGCACTCGCGCTCTTGTCTCTGGTCTCTCTGTGCGACCACATCTTGGAA
CTTGGGCCCCACCATGATCCGATGTCTTCCAGCCACGATGTTGATGCTGT
GTGCTTCGTGTGGTAGTGAGGTATGCGCGGCGAGCGGCGTAAACAACCTC
CGACAGAACCAAAAAATGATCATGAACGATGTCAACGCTATCGCTTGGGT
ACATTAGTCTGTGTATATATGGTCGTCGTGTCTTGTCCTTCACGATACGA
GAGTAGGAAAGGTACAGAGATAGAGAGAGACAGAGAGAGGGAACTTGCGC
AATATGATAGAGATCGAAATCGGACTGCTGTCAGACAGTCCTTTCGGGAA
TTGTAACAACAATCTCTTCAGCGTTTACCAAATTCGGCGGGAAATCATTT
TCGATGCTGCCGCGCCGCCGTGTGATCTACTCCCTCAGTCGCCGGACCTG
TTCCTCGGATATCCATGAGAGTTTAGATGGTTTGCGCGCGCAATTAAACT
CGGTAATTAAACTCTGCCTAGAGTCGTGTAAGGTTACAGTGAAGGCCCCG
ATCGACAACGACCTTGGGAAGCACGTGTCACCGTGCTTTGAATACCCCCC
CTGACGCCTTCGTCGTGTGCATGTTTGCGCACAATATACAGGCGTTAATC
TCTGCGAGCGTCCCAACTCCACCGTGGATTGCGACACCAGCAGCGACCAC
CGCCTTCCTTCCACCATATTCGGCACCAGCAGAGTCTACGAGAGAGGTAT
CGGCTCTGTGGGGAAGCATGAGCGCTAGCGTCGGGGGTGGTGGTGTGACC
ATAGCCGGACTAAGCCTTGCGCTTGCGTTGTCATTCGCGCTACCTGCACC
GTCTGAGGCCGATGCGGGCATGCCGGGAAGCGGTCCCGGGTGTAGCACCA
CCACACACCCCAGCTACAGCATCGTCACCTGTGAACGCACGGGCCTGGAT
CGTGATGGCCGCTTATTAGGCTGCAGGTGGGTTTGCGATCGTGATGGGAT
TTTTGGTGTTGGGCCGTTTTCGTTTTCCTGGGAGACACGGCAGTGTGCAG
TCAAGGGCAAACCTGCTAGAAACACAGCTGCTGTCTGGGCGAGTACAAGT
CAACCACTGAGGACTAATCGTTGGGGCGGCAGAAGCTCTGCGGAGACGTG
TCGAAACTTGCTGTAGGGGTGTTTCCTGAGGTATGTTGGAAAATGACACA
CCCCGAAACACAGGGTCTAAACGACGGTGGCAATGCCGACCATGCCAAAA
ACATCCGTGGATTCCTCAGCGGCTCCCCTGCTCCCCTACAATGTCCATCA
AATAGAGGAAGGAAATCGGAACATTCCGCTATTTTGCGGTGAGGCAATTG
CTCTCGCCTTTGTGACCCTGTGTTCGCGACAACGCAAAGTCCTGGGGCAA
GGCTCCTCTTTCAATTGCCTTGAACCGCGTCATCGATGCGTTCAAGCACG
GACGGGTAATATCGAATCTCGATGACGGTAAACATGTCGTCGCTCCCGCT
GCTACGCTGACTTTCCCAACGTAAATGCCCGCGACTTGACCAATAGAGCA
CGCCAGCCGCGGCTGTCGACGCACGGAGCGTGGGCGTGCGCCAAAAGATG
CCGGAGCGTGGCCCTCACTCACTGCCTGCTGCCACGCAGGATAGCAGAAA
CAAACAGCAACTCCCCACCTAAAAAAATGCAATGCACAACCAAAAATAAA
AAGAATAAACTGCTCTTCCTACTCTCACCACATCGATTCATCACGCCGAA
AGTATGTGCCATTTAAATACCGCACGAATGCGCCTCTTTCACGATGAACG
CAAGTATATCAAATCGTTGTCCCGCAACAGTTCTTCGGAGAACTGCGTAA
GCACCTCGGCCAAGCAGCCCGGAAAAATGGGCAGCCCTTGGGAGTACGCC
ATGCAGACCGACGACGCGGACCGGGCGTTCGCCTCCCTCGTGCGTGCGGT
CGAGGGCGCTCCCGAGGTGACGATGAAGACCATCGACACCAAAGGGCACT
ACATCCTGGCACAGTTCCCTTCGAAGGTAGGGGCACAACCGAGGGGAAAC
GGTACAGAGAGACTGCGAAAGAAGGGCGGAGGGACGTTGAACGGCCGTTT
TCTCTGGAATTGGCGGAGTGAGGTGAGCGATACCAAGACTGTCCAGGACG
CTGATGCCACTGGACGTACTCAAGCCCACCTTTTTGTGCGAAAAATGTTA
GGAAGCACAATACCACTGGACATGGTGACTTGTAACGGGTTCGTGCCTTA
ACAGCCACGACGCCACGGACAACAGCTTTTGTTGGGAAGCGCGATCACCA
AGGAGCGGTCAGTCAGCGCTGACTGATAGCTTAGTGGTTATCGTGCTTCC
TGATAAAAGATTTTGTCCGGGGTTCGATTCTCACCCGGTGCAGCTTCTTT
TTGAAGCAAAAAATTGAGCCCGATATATGGGAAGAAATAGCCTGAGTGAG
GTTTCCTCGGCTACGCAAACAAGCCGATAACCTGCTTGTGGCAAGCACGG
CGCTGATTACAGGGACTGCAACCCTGGGGTCTTTTGTACCGGGTTCGTGG
CTGAACAGCCAAGGCGGACCCGGGCAATAGCTTTGTTAGGACGCACGATA
ACCACTGAGATATCAATCAGCGCAGCGCTGACTGATATCTCAGTGGTTAT
CGTGCTTCCTAACAAAACAGACGGAAAGAGTTGCAAAAACAGGGAGTTTT
TGAGTAAAGGCAACTAGCATCTTCTTCCTGCACTCCCATGAAGTGCGGAC
TGGGCAACATGTGTAATTGGCTCGATATTTCTTCGCCGTACTGCGAGGTG
GTGCCATTTCTTGTTGACAGTCGGCGATTGCTGACTTGTGGTCGTTTTTA
TTTTTTTGTCGTGAGCAACCCAGCTACAGGAGCCAGCGTTGTTTTAGACT
TAGCCGACTGCTTTCTATTGTTGATGTGTGAGAGAGACGAGCGATCCCAA
GAGGTCGAGTAAGGAGGACGACGGAGCCACCATGGCTGATCCGCCCCTTC
TTCAGGTTTGCATGGAAGAGTTGATTTCCCGACGGCATTTCTTGTGCGAC
AACGGTCGCTGAGATATCCCGAGGAAGATCGCACCTCCCTTCCAAGGTGT
GTGTACATGTGGATACGTCACGCTACACCTGAAATTCGTCACCATTCTAC
TTGGACATAAAATATTCTCCTTTCCCCGACGCATCAAGGTCTGGTTTAGT
CAATGGAACTTCACCGCAGTGATAAACTGAATCAGTATCAAAGTTTTGCT
ATCCAGGAGGTTTTCGCCTATACACGCTGTTCAACCTCGTGACGCCAGGT
GCCTCCCAGCAGCGTAGACTCGGTAGAGTTCTTGGTGAAGCCGGAAGATC
AGATCGTCCTGTACCGCTCCGTCAGCCGGGACACGCTGTTCCTCTACCCG
TTGCAGCAGCCGGTTTCTGATCAGGGGAAGATCAAGGAGAGGTTGGAAGG
CACGTGGACGAGGTTCTGAGAGTTAAAGGGTTGGGTGTGGAGGGGAAGCT
GGGTGGTGATTTTGGTGCCAGGTACCGACAGCGATAGTTTTGCGCCGCAG
ATAATCTTACCAACATGTGCTGATTTCGGTGCTCTCATGTGGCGTGAGGT
CGGATTGCGATTGCGTGGATGATGGCAGCTCTATGTTTGCGGCTCTCAAA
AAAAGCGGAGCTTATAACGACGTGCCGCGTACTCCGCGCTGAATCCAGAA
ACTGGCGGGTGGTTGGGCTTTGCGGTCTCCACGGCATTCTGTCGGCGCTG
CTGTTTTATTAGTCTGAGTTAGGTCGCGTTGTGGGTTGCTTCGTGCATCT
CACGGTTTTCCGCCAATCAGTCGAGCCAAACTCCATATACGTTCCCTCCC
TCCTTGGTTTTCTTGTACCCTCTGCTTTTCCTGCTTTCCAGGCATTCGGA
GAGATCTCGGTTGGGGGATGTTCATGTATCAAGAGCAGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:2951562..2955502+

>mRNA_P-fluviatile_contig13.1935.1 ID=mRNA_P-fluviatile_contig13.1935.1|Name=mRNA_P-fluviatile_contig13.1935.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1710bp|location=Sequence derived from alignment at P-fluviatile_contig13:2951562..2955502+ (Porterinema fluviatile SAG_2381)
ATGCACTCGCGCTCTTGTCTCTGGTCTCTCTGTGCGACCACATCTTGGAA
CTTGGGCCCCACCATGATCCGATGTCTTCCAGCCACGATGTTGATGCTGT
GTGCTTCGTGTGGTAGTGAGATGCACTCGCGCTCTTGTCTCTGGTCTCTC
TGTGCGACCACATCTTGGAACTTGGGCCCCACCATGATCCGATGTCTTCC
AGCCACGATGTTGATGCTGTGTGCTTCGTGTGGTAGTGAGGCGTTAATCT
CTGCGAGCGTCCCAACTCCACCGTGGATTGCGACACCAGCAGCGACCACC
GCCTTCCTTCCACCATATTCGGCACCAGCAGAGTCTACGAGAGAGGTATC
GGCTCTGTGGGGAAGCATGAGCGCTAGCGTCGGGGGTGGTGGTGTGACCA
TAGCCGGACTAAGCCTTGCGCTTGCGTTGTCATTCGCGCTACCTGCACCG
TCTGAGGCCGATGCGGGCATGCCGGGAAGCGGTCCCGGGTGTAGCACCAC
CACACACCCCAGCTACAGCATCGTCACCTGTGAACGCACGGGCCTGGATC
GTGATGGCCGCTTATTAGGCTGCAGGCGTTAATCTCTGCGAGCGTCCCAA
CTCCACCGTGGATTGCGACACCAGCAGCGACCACCGCCTTCCTTCCACCA
TATTCGGCACCAGCAGAGTCTACGAGAGAGGTATCGGCTCTGTGGGGAAG
CATGAGCGCTAGCGTCGGGGGTGGTGGTGTGACCATAGCCGGACTAAGCC
TTGCGCTTGCGTTGTCATTCGCGCTACCTGCACCGTCTGAGGCCGATGCG
GGCATGCCGGGAAGCGGTCCCGGGTGTAGCACCACCACACACCCCAGCTA
CAGCATCGTCACCTGTGAACGCACGGGCCTGGATCGTGATGGCCGCTTAT
TAGGCTGCAGTTCTTCGGAGAACTGCGTAAGCACCTCGGCCAAGCAGCCC
GGAAAAATGGGCAGCCCTTGGGAGTACGCCATGCAGACCGACGACGCGGA
CCGGGCGTTCGCCTCCCTCGTGCGTGCGGTCGAGGGCGCTCCCGAGGTGA
CGATGAAGACCATCGACACCAAAGGGCACTACATCCTGGCACAGTTCCCT
TCGAAGTTCTTCGGAGAACTGCGTAAGCACCTCGGCCAAGCAGCCCGGAA
AAATGGGCAGCCCTTGGGAGTACGCCATGCAGACCGACGACGCGGACCGG
GCGTTCGCCTCCCTCGTGCGTGCGGTCGAGGGCGCTCCCGAGGTGACGAT
GAAGACCATCGACACCAAAGGGCACTACATCCTGGCACAGTTCCCTTCGA
AGGTGCCTCCCAGCAGCGTAGACTCGGTAGAGTTCTTGGTGAAGCCGGAA
GATCAGATCGTCCTGTACCGCTCCGTCAGCCGGGACACGCTGTTCCTCTA
CCCGTTGCAGCAGCCGGTTTCTGATCAGGGGAAGATCAAGGAGAGGTTGG
AAGGCACGTGGACGAGGTGCCTCCCAGCAGCGTAGACTCGGTAGAGTTCT
TGGTGAAGCCGGAAGATCAGATCGTCCTGTACCGCTCCGTCAGCCGGGAC
ACGCTGTTCCTCTACCCGTTGCAGCAGCCGGTTTCTGATCAGGGGAAGAT
CAAGGAGAGGTTGGAAGGCACGTGGACGAGAGATCTCGGTTGGGGGATGT
TCATGTATCAAGAGCAGTGAAGATCTCGGTTGGGGGATGTTCATGTATCA
AGAGCAGTGA
back to top