mRNA_P-fluviatile_contig13.1771.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig13.1771.1 vs. uniprot
Match: A0A6H5J5V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V9_9PHAE) HSP 1 Score: 400 bits (1027), Expect = 4.590e-125 Identity = 271/578 (46.89%), Postives = 320/578 (55.36%), Query Frame = 3
Query: 516 LVALPTSYATQPQQFAS--WVAGCAFCGGHAIPAGPNSLRRRTQGSSRGRGGTTTGSSNSHPASCSSLPLFGSKYSISSSNVCRGKPGLLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGRKPLRAPWEDLQWENPA----RKGAGIEEGEDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRPRRRRRAKAGGLEAEPLPSGWDTAGWFGDSKQANQGGIFDWARSFYNTLFWYGGASSGGDDELPAMNFQDLLERYDVPASERTSARPRPIVPPEALAAEQDFRWQPSGRDSA----AAAERKSRRRRKPRKPVAYGGVPAVDVTKQRPGRRQREXXXXXXXXXXXXXXXXXXXXXXXXXGIRSREDAVAIGQLRRKQTQLAARELKYEMDLEKVRERLNVVDATVELWMRRSAGMLARGASETDTDVLQAKRRIYGLKEEGRQLDNATVDLEGRLEDCRAKLDRIVQELELLGEDPVPQAFYAPD--DDESGQRAETAEAGIERRG--VDADGSPGL-----------EMDRLGLEPEKKRGVDAVPA 2174
L ++P S+A P Q +S WV GCAFC G +S RR+++ S P SCS L L S S C G GL+ A RKPLRAPWED+QW NP+ R+ A E W RPRRRR ++AEP+P+GWDTA WF +++ANQGG+++WARSFYNTLFWYGGASS G+DELPAMNFQDLLER+D+PA E++SARPRPIVPPE LAAEQDFRW+PSGR++ A AE + R K R A GG + +R RR+R+ D VAIGQLRRKQ QLA RE K E+DLEKVR+RL+VVDATVELWMRRSAGML+RG SETDTDVLQAKRRIYGLKEEGRQLD+ATV+LEGRLEDCRAKLDRIVQELE LGE +P+AFY P DDE +AET EAGI+ G V D +P + E+ LGL E KR +AVPA
Sbjct: 10 LPSIPASHAPHPHQHSSVAWV-GCAFCVTGTRSTGSSSTRRQSR---------------SRPRSCSPLVLG----SDGGSRACGGDVGLIAATASRWGADGDELDGGNDGKDRRRRAER------RKPLRAPWEDIQWSNPSNPSSRRAARGGERVAWKDVDDEEEEEEMLGLEDGSRSMVQPRGYTRSYDDADVDT------------RPRRRR--SRDDIDAEPVPTGWDTAQWFTGAQEANQGGLYEWARSFYNTLFWYGGASSEGEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREATGGATATAESTNWSRAKGRGSTASGGATG---SSRRRARRERDERDLDWESVGRAEREMHAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIYGLKEEGRQLDSATVELEGRLEDCRAKLDRIVQELEFLGEAAMPRAFYTPGEGDDEIVAKAETVEAGIQAGGGGVKGDVNPSMTTPSGDDTKVVEIGGLGLNAESKRPTEAVPA 544
BLAST of mRNA_P-fluviatile_contig13.1771.1 vs. uniprot
Match: D8LRJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ5_ECTSI) HSP 1 Score: 271 bits (693), Expect = 3.630e-80 Identity = 155/256 (60.55%), Postives = 181/256 (70.70%), Query Frame = 3
Query: 1125 RPRRRRRAKAGGLEAEPLPSGWDTAGWFGDSKQANQGGIFDWARSFYNTLFWYGGASSGGDDELPAMNFQDLLERYDVPASERTSARPRPIVPPEALAAEQDFRWQPSGRDSA----AAAERKSRRRRKPRKPVAYGGVPAVDVTKQRPGRRQREXXXXXXXXXXXXXXXXXXXXXXXXXGIRSREDAVAIGQLRRKQTQLAARELKYEMDLEKVRERLNVVDATVELWMRRSAGMLARGASETDTDVLQAKRRIY 1880
RPRRRR G++AEP+P+GWDTA WF +++ANQGG+++WARSFYNTLFWYGGASS +DELPAMNFQDLLER+D+PA E++S RPRPIVPPE LAAEQDF WQPSGR++ AAAE +R R K R GG A T++R RR+RE R D VAIGQLRRKQ QLA RE K E+DLEKVR+RL+VVDATVELWMRRSAGML+RG SETDTDVLQ RR +
Sbjct: 29 RPRRRR--SRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSTRPRPIVPPEDLAAEQDFLWQPSGREATGGATAAAEGTNRSRSKDRGSTVSGG--ATRSTRRR-ARREREERDLDWENVGRAEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDH 279
BLAST of mRNA_P-fluviatile_contig13.1771.1 vs. uniprot
Match: A0A836C9G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 8.210e-19 Identity = 111/272 (40.81%), Postives = 141/272 (51.84%), Query Frame = 3
Query: 1236 GIFDWARSFYNTLFWYGGASSGGDDELPAMNFQDLLERYDVP-----ASERTSARPRPI---------------VPPEALAAEQD--FRWQPSG-RDSAAAAERKSRRRRKPRKPVAYGGVPAVDVTKQRPGRRQREXXXXXXXXXXXXXXXXXXXXXXXXXGIRSREDAVAIGQLRRKQTQLAARELKYEMDLEKVRERLNVVDATVELWMRRSAGMLARGASETDTD---VLQAKRRIYGLKEEGRQLDNATVDLEGRLEDCRAKLDRIV 1973
G W R FYN LFWYG A+ DD LPAM+F+DL+E+Y+ A +R A P+ VPP + D FRW P G RD A P++ T +P RR XXXXXXXXXXXXXXXXXXXXXXXXX LRR+ L A+ DL KV ERL+V+D T+ELW+RR + AR D ++ AKRR+Y L+++GR L+ A V+L GRLE+ A L R++
Sbjct: 2 GFMRWLRGFYNALFWYG-AAFDDDDSLPAMDFKDLMEQYETEGDRRRARQRKGAAEAPLSGGRRAAGDRQVEYRVPPTEYQNDSDWKFRWNPGGDRDRA------------PKR------------TSTQPDRRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LRRRARDLTAKRAALRRDLAKVDERLSVLDTTLELWLRRGRALAARRRPPGGADAAELVSAKRRVYKLRDDGRALEAARVELAGRLENASANLARVL 245 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig13.1771.1 >prot_P-fluviatile_contig13.1771.1 ID=prot_P-fluviatile_contig13.1771.1|Name=mRNA_P-fluviatile_contig13.1771.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=574bp MLPSGAANAACLVLVALPTSYATQPQQFASWVAGCAFCGGHAIPAGPNSLback to top mRNA from alignment at P-fluviatile_contig13:1533102..1539434+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig13.1771.1 ID=mRNA_P-fluviatile_contig13.1771.1|Name=mRNA_P-fluviatile_contig13.1771.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6333bp|location=Sequence derived from alignment at P-fluviatile_contig13:1533102..1539434+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig13:1533102..1539434+ >mRNA_P-fluviatile_contig13.1771.1 ID=mRNA_P-fluviatile_contig13.1771.1|Name=mRNA_P-fluviatile_contig13.1771.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3444bp|location=Sequence derived from alignment at P-fluviatile_contig13:1533102..1539434+ (Porterinema fluviatile SAG_2381)back to top |