mRNA_P-fluviatile_contig1.78.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.78.1
Unique NamemRNA_P-fluviatile_contig1.78.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.78.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 2.020e-85
Identity = 140/181 (77.35%), Postives = 156/181 (86.19%), Query Frame = 1 
Query:    1 KNEAPVLYPRMDLPGPIRIMEEDVSHVTKQRELAAYMASSIYFITPKYSVKDVERYSDGLQSVGLHGQQSLASQLSAGMKRYLPPELTDRPAMGAARAAGKPADLTPLPAFDGKSLTALEDKERQSAETAGAKKDKDQDDAAMMSDVEAEVEEDEQDDDYAVDHYESGEESAGDDEPAAVF 543
            ++EAPVLYPRMDLPGPIRI+E+DVSHV KQRELAA M+ SIY+ITPKY+VKDVERYSDG+ S G  GQ SLASQLSAGMKR+LPPELTDRPA+G   A GK   L PLPAFDGKSLTALEDKER+SAET GA+K+KD++DA M+SDVEAEVEE     DYAVDHYESG ES GDDEPAAVF
Sbjct:    5 QSEAPVLYPRMDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQ-SLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKEDAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI2.020e-8577.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1159180..1159725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase III, subunit Rpc31
Ec32 orthologEc-04_006380.1
Exons1
Model size546
Cds size516
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.6645842-CDS-P-fluviatile_contig1:1159179..11596951622815283.6645842-CDS-P-fluviatile_contig1:1159179..1159695Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1159180..1159695 -
1693561385.5128632-CDS-P-fluviatile_contig1:1159179..11596951693561385.5128632-CDS-P-fluviatile_contig1:1159179..1159695Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1159180..1159695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.6803813-UTR-P-fluviatile_contig1:1159695..11597251622815283.6803813-UTR-P-fluviatile_contig1:1159695..1159725Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1159696..1159725 -
1693561385.5205803-UTR-P-fluviatile_contig1:1159695..11597251693561385.5205803-UTR-P-fluviatile_contig1:1159695..1159725Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1159696..1159725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.78.1prot_P-fluviatile_contig1.78.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1159180..1159695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.78.1

>prot_P-fluviatile_contig1.78.1 ID=prot_P-fluviatile_contig1.78.1|Name=mRNA_P-fluviatile_contig1.78.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=172bp
MDLPGPIRIMEEDVSHVTKQRELAAYMASSIYFITPKYSVKDVERYSDGL
QSVGLHGQQSLASQLSAGMKRYLPPELTDRPAMGAARAAGKPADLTPLPA
FDGKSLTALEDKERQSAETAGAKKDKDQDDAAMMSDVEAEVEEDEQDDDY
AVDHYESGEESAGDDEPAAVF*
back to top

mRNA from alignment at P-fluviatile_contig1:1159180..1159725-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.78.1 ID=mRNA_P-fluviatile_contig1.78.1|Name=mRNA_P-fluviatile_contig1.78.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=546bp|location=Sequence derived from alignment at P-fluviatile_contig1:1159180..1159725- (Porterinema fluviatile SAG_2381)
AAGAACGAGGCACCTGTTCTCTACCCTCGAATGGACCTCCCCGGCCCTAT
TCGAATTATGGAGGAGGATGTCAGCCACGTGACGAAACAGAGAGAGTTGG
CGGCATACATGGCCAGTTCCATCTACTTCATCACCCCCAAATATTCAGTT
AAGGACGTCGAGCGGTATTCCGACGGTCTTCAGTCGGTTGGACTCCATGG
ACAACAATCGCTTGCGAGTCAGCTATCGGCTGGCATGAAGCGATATCTAC
CACCTGAGCTTACGGACAGACCAGCGATGGGAGCAGCCAGGGCTGCTGGA
AAGCCGGCAGACCTTACGCCTTTGCCAGCATTCGATGGCAAATCACTCAC
AGCTCTGGAAGACAAGGAGAGACAAAGTGCAGAAACGGCTGGCGCGAAAA
AGGACAAAGACCAAGACGATGCGGCAATGATGAGCGATGTTGAGGCGGAG
GTTGAGGAGGATGAGCAGGACGACGACTATGCGGTTGATCACTATGAAAG
CGGAGAAGAGAGCGCAGGAGATGACGAGCCGGCAGCCGTTTTCTAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:1159180..1159725-

>mRNA_P-fluviatile_contig1.78.1 ID=mRNA_P-fluviatile_contig1.78.1|Name=mRNA_P-fluviatile_contig1.78.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1032bp|location=Sequence derived from alignment at P-fluviatile_contig1:1159180..1159725- (Porterinema fluviatile SAG_2381)
ATGGACCTCCCCGGCCCTATTCGAATTATGGAGGAGGATGTCAGCCACGT
GACGAAACAGAGAGAGTTGGCGGCATACATGGCCAGTTCCATCTACTTCA
TCACCCCCAAATATTCAGTTAAGGACGTCGAGCGGTATTCCGACGGTCTT
CAGTCGGTTGGACTCCATGGACAACAATCGCTTGCGAGTCAGCTATCGGC
TGGCATGAAGCGATATCTACCACCTGAGCTTACGGACAGACCAGCGATGG
GAGCAGCCAGGGCTGCTGGAAAGCCGGCAGACCTTACGCCTTTGCCAGCA
TTCGATGGCAAATCACTCACAGCTCTGGAAGACAAGGAGAGACAAAGTGC
AGAAACGGCTGGCGCGAAAAAGGACAAAGACCAAGACGATGCGGCAATGA
TGAGCGATGTTGAGGCGGAGGTTGAGGAGGATGAGCAGGACGACGACTAT
GCGGTTGATCACTATGAAAGCGGAGAAGAGAGCGCAGGAGATGACGAGCC
GGCAGCCGTTTTCTAGATGGACCTCCCCGGCCCTATTCGAATTATGGAGG
AGGATGTCAGCCACGTGACGAAACAGAGAGAGTTGGCGGCATACATGGCC
AGTTCCATCTACTTCATCACCCCCAAATATTCAGTTAAGGACGTCGAGCG
GTATTCCGACGGTCTTCAGTCGGTTGGACTCCATGGACAACAATCGCTTG
CGAGTCAGCTATCGGCTGGCATGAAGCGATATCTACCACCTGAGCTTACG
GACAGACCAGCGATGGGAGCAGCCAGGGCTGCTGGAAAGCCGGCAGACCT
TACGCCTTTGCCAGCATTCGATGGCAAATCACTCACAGCTCTGGAAGACA
AGGAGAGACAAAGTGCAGAAACGGCTGGCGCGAAAAAGGACAAAGACCAA
GACGATGCGGCAATGATGAGCGATGTTGAGGCGGAGGTTGAGGAGGATGA
GCAGGACGACGACTATGCGGTTGATCACTATGAAAGCGGAGAAGAGAGCG
CAGGAGATGACGAGCCGGCAGCCGTTTTCTAG
back to top