mRNA_P-fluviatile_contig13.1673.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1673.1
Unique NamemRNA_P-fluviatile_contig13.1673.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1673.1 vs. uniprot
Match: A0A6H5KV80_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV80_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.060e-110
Identity = 178/249 (71.49%), Postives = 201/249 (80.72%), Query Frame = 3 
Query:  153 MLPAITMGNTSSQPTESRREAPPRNPAHWGSAPASLNMDVVRVAGPLGWADSTYSGSHVSSDTIDSTVGSTPSSVEGGGA-IKRRLSSRTKREISEKDQEFFDTMELNIKRRQSYGDPAPRTPEPHQWTNYIGGTLNSVSREHKPHYMFRTVPYMDMEILRKHNTHLKCGKVRPAQLPLKRRNSWSSVELCLVMDDLDVQAMIKVTCLVLHHHIAEGCAMSWPIDPRFNIFNDPPGMEVGSKGGGAANG 896
            M+ AI MGN +S PT+ R  A  R PAHWGSA A++NMDV+  AG LGWADS         +TIDST+ STPSS E GG  + RRLSS+TKR+ISE++QEFFD+ME NI+R+QSYG P P  PEPHQWTN+IGGTLNSVSREHKPHYMFRTVPYMDM+IL KHN HL     RPA+LPLKRRNS SSVELCL +DDLDVQAMIKVT LVLHHHI+EGCAMSWPIDPRFNIFNDPPGMEV S   G++NG
Sbjct:    1 MIEAIIMGNNASSPTDRRSTASAREPAHWGSAEAAVNMDVIGTAGALGWADSC--------NTIDSTMDSTPSSGEEGGVPLTRRLSSKTKRQISEEEQEFFDSMERNIQRKQSYGGPMPPEPEPHQWTNFIGGTLNSVSREHKPHYMFRTVPYMDMDILHKHNRHLNWEAARPAKLPLKRRNSSSSVELCLFIDDLDVQAMIKVTSLVLHHHISEGCAMSWPIDPRFNIFNDPPGMEVASSSNGSSNG 241
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BLAST of mRNA_P-fluviatile_contig13.1673.1 vs. uniprot
Match: A0A836C9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.730e-18
Identity = 58/172 (33.72%), Postives = 84/172 (48.84%), Query Frame = 3 
Query:  447 EFFDTMELNIKRRQSYGDPAPRTPEPHQWTNYIGGTLNSVSREHKPHYMFRTVPYMDMEILRKHNTHLKCGKVRP------AQLPLKRRNSWSSVELCLVMDDLDVQAMIK--------------------------------VTCLVLHHHIAEGCAMSWPIDPRFNIFND 848
            EF   +E  + R+Q+  D AP   EP  W NY+GG+LN+ SR HKPH+  +T PY+   ++    +++K G          A +P KRRNS  S+E+ L +D++DV   I                                 V  L+LHHHI +G A+ WPI  +F IF+D
Sbjct:   82 EFCRQVEAAVARKQAMAD-APYE-EPSTWVNYVGGSLNTRSRVHKPHHTIQTTPYLSQSVV---TSYIKGGGAASLAAAANASVPFKRRNSTGSLEVRLTVDNMDVAVTIAXXXXXXXXXXXXXXAGMVXXXXXXXXXXXXXXVIALILHHHILQGSALDWPIAKQFAIFDD 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV80_9PHAE1.060e-11071.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9Q1_9STRA9.730e-1833.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:619528..623848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size928
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1673.1prot_P-fluviatile_contig13.1673.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 619528..623696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.6511056-CDS-P-fluviatile_contig13:619527..6197041622815544.6511056-CDS-P-fluviatile_contig13:619527..619704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 619528..619704 -
1693562210.2806654-CDS-P-fluviatile_contig13:619527..6197041693562210.2806654-CDS-P-fluviatile_contig13:619527..619704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 619528..619704 -
1622815544.6636329-CDS-P-fluviatile_contig13:620611..6207051622815544.6636329-CDS-P-fluviatile_contig13:620611..620705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 620612..620705 -
1693562210.292037-CDS-P-fluviatile_contig13:620611..6207051693562210.292037-CDS-P-fluviatile_contig13:620611..620705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 620612..620705 -
1622815544.6792743-CDS-P-fluviatile_contig13:621347..6215141622815544.6792743-CDS-P-fluviatile_contig13:621347..621514Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 621348..621514 -
1693562210.3056989-CDS-P-fluviatile_contig13:621347..6215141693562210.3056989-CDS-P-fluviatile_contig13:621347..621514Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 621348..621514 -
1622815544.6927094-CDS-P-fluviatile_contig13:621878..6219661622815544.6927094-CDS-P-fluviatile_contig13:621878..621966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 621879..621966 -
1693562210.3153713-CDS-P-fluviatile_contig13:621878..6219661693562210.3153713-CDS-P-fluviatile_contig13:621878..621966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 621879..621966 -
1622815544.7031271-CDS-P-fluviatile_contig13:622342..6225061622815544.7031271-CDS-P-fluviatile_contig13:622342..622506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 622343..622506 -
1693562210.3250635-CDS-P-fluviatile_contig13:622342..6225061693562210.3250635-CDS-P-fluviatile_contig13:622342..622506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 622343..622506 -
1622815544.7142859-CDS-P-fluviatile_contig13:623328..6234031622815544.7142859-CDS-P-fluviatile_contig13:623328..623403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 623329..623403 -
1693562210.3358376-CDS-P-fluviatile_contig13:623328..6234031693562210.3358376-CDS-P-fluviatile_contig13:623328..623403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 623329..623403 -
1622815544.72421-CDS-P-fluviatile_contig13:623687..6236961622815544.72421-CDS-P-fluviatile_contig13:623687..623696Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 623688..623696 -
1693562210.3445323-CDS-P-fluviatile_contig13:623687..6236961693562210.3445323-CDS-P-fluviatile_contig13:623687..623696Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 623688..623696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.7345545-UTR-P-fluviatile_contig13:623696..6238481622815544.7345545-UTR-P-fluviatile_contig13:623696..623848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 623697..623848 -
1693562210.3522716-UTR-P-fluviatile_contig13:623696..6238481693562210.3522716-UTR-P-fluviatile_contig13:623696..623848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 623697..623848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1673.1

>prot_P-fluviatile_contig13.1673.1 ID=prot_P-fluviatile_contig13.1673.1|Name=mRNA_P-fluviatile_contig13.1673.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=258bp
MLPAITMGNTSSQPTESRREAPPRNPAHWGSAPASLNMDVVRVAGPLGWA
DSTYSGSHVSSDTIDSTVGSTPSSVEGGGAIKRRLSSRTKREISEKDQEF
FDTMELNIKRRQSYGDPAPRTPEPHQWTNYIGGTLNSVSREHKPHYMFRT
VPYMDMEILRKHNTHLKCGKVRPAQLPLKRRNSWSSVELCLVMDDLDVQA
MIKVTCLVLHHHIAEGCAMSWPIDPRFNIFNDPPGMEVGSKGGGAANGEG
IKGAEGRQ
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mRNA from alignment at P-fluviatile_contig13:619528..623848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1673.1 ID=mRNA_P-fluviatile_contig13.1673.1|Name=mRNA_P-fluviatile_contig13.1673.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4321bp|location=Sequence derived from alignment at P-fluviatile_contig13:619528..623848- (Porterinema fluviatile SAG_2381)
CCTCACACGAGGGAAAGGATTCTACACCGTCTCTAGCGGGACACTAGTCC
GCGTAGCTTCAAACCCTTGGTCGGGTACGTAAGATTTAAGTGGTGGAGCG
GTCAACGCGAAGACGGGTTTCCGCGCATTCCGCTACTTCAAGGAGCCTGT
CGATGTTGCCGGTGAGGCTTGGGTTATTGGCATGAAGTTCCTCCCGATTA
GGTGTGCTGTGCGGCATTTTCACTCGCGATGTCTGCAAGGGTGCCAAGTG
AAAAGGCGTGATCGGGTCAGACGGCGGGGCTCAGGATTTATCTCCTTTTC
TCACTCTCTCTGTCTCTCTCTGTGTCTCTCTCTGTCTCTCTGTCTCTTCC
CTCTTTTCCTCACTTTCTCTCTCGCATCGTTCCCCCGCCGATGTCATGTT
CTATTTCTCTTCCGGCTCAACCATGCCTCGACGCGCGCTTTGCAGGCGAT
TACGATGGGAAACACATCGAGCCAGCCGACTGAAAGCAGACGTGAAGCTC
CGCCAAGAAATCCAGCTCACGTAAGGTTTCGTTCATGCCTTTGTTCGTTT
CCAGCGAGCTAATGGGGCCGAGAGACAGCTGCCCAGCAGACTGTTCTCTA
GAAATTCGTTTGAACCCGACCCAGGACACTCAACACGCAACGTTTGATTG
CATTTCGAGAGGGGTTGCAAAGTAATAGGTTGATCAGTTCCGCCTGCATC
ACTTCTCGTTCCCCACTCGGCTGTCCAGCTTTGGCGGGCATTCGCCTTCT
CTGATCGGCGTCATGGGCACGCTGCGCATGTATCACAGAGGCTCGAAAAC
TCCGCCTTGCTTGTTTTTGTCGTCCGTCGCGTCCACCATACCCTGGGACA
AATAGCGGGCGGTTTTTTGGATTCCGAAAGGGAGAATGGATCCCGCTGCT
TGTATGGCAGGTTGTTTAGATGACCAAGACGGGGGATGCAGGACAGGGAG
GGGTAGAGACGCGACTTCACGAAGGTTTTTCTCGACGCGCCTTTTTTGGA
AGCGATATTTGATACTCCGTATTTCAAACTTGGGAAGGGGGGGGGAGAGG
TCACGGTCCCCTGTCAACCGATCTCTCGGTTGCCGCCGATTTTCGAAACA
GCGAAGGACCAGTCAGCAGTGTCACATCGGGCGTAGAGCGAGAAGTAGGC
GTGGATTGTCGCAAAGGGGCACGGGCTTCTCAATGTAACAGCACATCACG
CAGTCCACCTCCAGTCTCCCCCGTCATTGAAGGCACAGCGCCGGATGGCG
TGACAGCGGACCATCGATTTTCCATTTGTTCAACTGCTGCCAAAGCTACT
ATCCGTCGCATTTCTTTGACCCGCCGCCATCTCTCTGCTCAGTGGGGTTC
GGCCCCAGCATCCTTGAATATGGACGTCGTCCGAGTCGCCGGCCCGCTGG
GGTGGGCTGATTCAACCTACAGCGGTAGCCACGTTTCGTCCGACACGATC
GACAGCACCGTGGGCTCTACCCCTTCTTCCGTCGAGGGGGGCGGAGCCAT
CAAAAGGTAGGCGACCTCTGGGAAACGGGGACATCCCGCCGTCGGAAGCG
CAGTTCCTTCGTCACTTACGTGAGGCGATTCCACACACGAAAAAGTAAAT
CGAGAAACACGTGCCCCGGAATACATCCATGCCGGGGTCGGGAGCCCGTC
GAGGTGCTTAAAGGGTGCATCTTTCGTCGCCTGTGCGGATGGAGAATGTG
GTGTGGTGATTGTGCGGATCCTGGTTTCCATTGGAACTCTACTTCATTAG
AATAGTGTGTCCGTTGCCTGCCGCGTGTTGCCGCGCCGCCAGTGGATGTC
TCTCCCGTGGGCGGCCGCGATTCGTGGACACTCTTCTCGCTCGAAACGTC
ACGTATTCTGTGTGTGCGCCTGCTTACCACAGGAGACTCAGCAGCAGGAC
GAAAAGGGAGATTTCGGAGAAAGATCAGGAATTCTTCGACACCATGGAGC
TCAATATCAAGCGCAGACAGGTATCACGCGACAGTGCGAACAAGCCGATA
CACGATACCAAGACGAGAGCAACACTGCTCTCGTCATGGAGTAGAAAACA
CGCGCGCAGGCGACTTTTGTTTTCTACTTCCACAGCGGTCACGACCGAAC
GGCCGCTTTGCCGAGTCGTAGCCAACATTTTTTTTAACCCCGGGGATCGC
GCTTTGTGCGAGCCGCAACATGAGCCAGCCCCCCCCCCCCTGGCATCATC
CACTGACCGCTGTCGTTGCGTCGACATAAGCGTGTCGCGCGCACACAACG
CCTTTTTTACCTACAGCGCATGACACCGACAACTCGTTTGCGGCTCCACC
CCCCGCGCTTTCCAAAATGAAATATGTTGGCCAGAGCTACGGGGATCCGG
CCCCCCGAACGCCGGAGCCTCACCAGTGGACCAACTACATCGGCGGCACG
CTCAACAGCGTGAGTCGGGAGCACAAGCCCCACTATATGTTCCGCACGGT
GCCTTACATGGACATGGAGATTCTGCGCAAGCACAACACGCACCTCAAGT
GGTGAGAGAAGAGTGGCAGAGGCGGGGGGCAGGAGATCGATAAGTGGGAG
AGAGAGCAGTTTCAACTCAGTCACGGCATTGGGAGCCAGATTTACGCGCA
TCGTGTGTTACGTTAGGTGTTCACCAATCCTTTCCTATTCCCCTGGGCCA
CGAATGATGATCCAGGTTGTTTGTCCGACTAGTCTTGTTTCATTCACGGA
GAAGGAGATCAAATAAGGAGCTCGAAACAACTCCCCTCCGTAGAATACTC
CATCTTAGTCCGGCACGGGTGGTATCCGCGATACAGGGGGCGGGATGGCT
CTATATTCCCGCCGGCATGGTGATCGCAGGTGATTTCGCGGTGGGACGTG
TGCGATGCCTGCACCTGATGCACATGCCGCGGGACGTGTGTGCTGCCTGC
ACCTTGTACGCATGCCCTACCGCGTAGTTCGCTTTACGGTTTTGTCGCTA
CTGCGGCTACCTTCTCTTATTTTACAAAGCCAGTTTCATCAGCCCTTAGG
CGACAGGGGTGCGTCGCTCCTGCTCACTTCCGTTTGAGCGAACACTCTCC
GCCCCCCCGTTTGTTCACGGTCTGCCGTCCTCATCCTTCTCTGCTCTGGT
GGACCGGCGGGTGACTTGGGACCGGTGGGTGCCGGGGGGGTAGTGGGAAA
GTACGGCCGGCCCAGCTGCCTCTGAAGAGGAGAAACAGCTGGTCGAGCGT
GGAGCTGTGCCTTGTGATGGACGACCTCGACGTGCAGGTACTTGGAAGAA
GAATGGCCCGAGCCCGTGTTCCCGGCCTTGTCTTCGACCCCAACCACGAC
CGTGACCCTGAAATCATTCTCCCCTCCCCCCCGCGATTCACGACCTGGCC
GCGCGGATGGGGGGGTTTGGGTCGCCCAAAGCTGTGGCATCACTGCCGAT
GACGAAGAAAAGACGCCTGACCGACCAAACTTGCTTTGTGCTGGGTGGGC
GAAACATGCCGTGAAACTGTTTCATGGGGGAGAGAATAAACATTTGCTGC
CGGGGGGCGTTTCGTCTCTTCTGTCTTGCCCTCAGCGCTGGGTGCCCTTT
TGCCATGTTTCGCCTTCCCTGTCTGTTGGCCCCAACGGGACTGCTGCTGT
CTCGCCTCTCGGGGCCCTTTCTCCCACGTATCTCTGCCATGTCTCCCGAT
CGAAAGGAGAAATCTGGCTGGGCGTGTGTCTGGGTTTGGTCGAAACCGAC
GAAAAGTGGGTTATGAGGCAGGTAGAGTAACTTTTGTCGAGGTCTAGACT
CCCGGTCTTTCTCTGCCAAAGCGCGCGAAGGGGCGGCTGTTGGTGATGGT
GGTGGTGGTAGGTGTCGGGACTTTTGCTCTTTGCCGTGCCTCAACCTCCG
TGTCCGAACGCCATCTTGAAGTGAGCCTTGTTGTTTACTATGTCGGGCCC
GAAAACAAGCTGTTTTGTGGTGTCGCTTGTTCTGATGCTCACGCCGGCTG
CGGTCTTGTGGGGGAGCAGGGGGGTGGGCGACGCACTGACCTCAAACTAT
CGCCCGCCAAACACGAGTACCGGAGCTGGTTGCGCGGCGTGTCCTGCGGC
ACGAATTTGAAAAACACTTTTCGGCGGGGGTATGTGCGTGCCATCCCGCC
TGCTTGCCTCCCTTCCTGCTCGCATCTGGGCGTGAACGCTCCAGGCCATG
ATCAAGGTGACGTGCTTAGTGCTCCACCACCACATCGCAGAGGGCTGCGC
CATGTCCTGGCCAATCGATCCCCGGTTCAACATCTTCAACGACCCCCCCG
GGATGGAGGTCGGCAGCAAGGGAGGCGGAGCTGCGAACGGAGAAGGCATA
AAGGGGGCGGAGGGACGGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:619528..623848-

>mRNA_P-fluviatile_contig13.1673.1 ID=mRNA_P-fluviatile_contig13.1673.1|Name=mRNA_P-fluviatile_contig13.1673.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1548bp|location=Sequence derived from alignment at P-fluviatile_contig13:619528..623848- (Porterinema fluviatile SAG_2381)
ATGTTGCCGATGTTGCCGGCGATTACGATGGGAAACACATCGAGCCAGCC
GACTGAAAGCAGACGTGAAGCTCCGCCAAGAAATCCAGCTCACGCGATTA
CGATGGGAAACACATCGAGCCAGCCGACTGAAAGCAGACGTGAAGCTCCG
CCAAGAAATCCAGCTCACTGGGGTTCGGCCCCAGCATCCTTGAATATGGA
CGTCGTCCGAGTCGCCGGCCCGCTGGGGTGGGCTGATTCAACCTACAGCG
GTAGCCACGTTTCGTCCGACACGATCGACAGCACCGTGGGCTCTACCCCT
TCTTCCGTCGAGGGGGGCGGAGCCATCAAAAGTGGGGTTCGGCCCCAGCA
TCCTTGAATATGGACGTCGTCCGAGTCGCCGGCCCGCTGGGGTGGGCTGA
TTCAACCTACAGCGGTAGCCACGTTTCGTCCGACACGATCGACAGCACCG
TGGGCTCTACCCCTTCTTCCGTCGAGGGGGGCGGAGCCATCAAAAGGAGA
CTCAGCAGCAGGACGAAAAGGGAGATTTCGGAGAAAGATCAGGAATTCTT
CGACACCATGGAGCTCAATATCAAGCGCAGACAGGAGACTCAGCAGCAGG
ACGAAAAGGGAGATTTCGGAGAAAGATCAGGAATTCTTCGACACCATGGA
GCTCAATATCAAGCGCAGACAGAGCTACGGGGATCCGGCCCCCCGAACGC
CGGAGCCTCACCAGTGGACCAACTACATCGGCGGCACGCTCAACAGCGTG
AGTCGGGAGCACAAGCCCCACTATATGTTCCGCACGGTGCCTTACATGGA
CATGGAGATTCTGCGCAAGCACAACACGCACCTCAAGTGAGCTACGGGGA
TCCGGCCCCCCGAACGCCGGAGCCTCACCAGTGGACCAACTACATCGGCG
GCACGCTCAACAGCGTGAGTCGGGAGCACAAGCCCCACTATATGTTCCGC
ACGGTGCCTTACATGGACATGGAGATTCTGCGCAAGCACAACACGCACCT
CAAGTGTGGGAAAGTACGGCCGGCCCAGCTGCCTCTGAAGAGGAGAAACA
GCTGGTCGAGCGTGGAGCTGTGCCTTGTGATGGACGACCTCGACGTGCAG
TGGGAAAGTACGGCCGGCCCAGCTGCCTCTGAAGAGGAGAAACAGCTGGT
CGAGCGTGGAGCTGTGCCTTGTGATGGACGACCTCGACGTGCAGGCCATG
ATCAAGGTGACGTGCTTAGTGCTCCACCACCACATCGCAGAGGGCTGCGC
CATGTCCTGGCCAATCGATCCCCGGTTCAACATCTTCAACGACCCCCCCG
GGATGGAGGTCGGCAGCAAGGGAGGCGGAGCTGCGAACGGAGAAGGCATA
AAGGGGGCGGAGGGACGGCAGGCCATGATCAAGGTGACGTGCTTAGTGCT
CCACCACCACATCGCAGAGGGCTGCGCCATGTCCTGGCCAATCGATCCCC
GGTTCAACATCTTCAACGACCCCCCCGGGATGGAGGTCGGCAGCAAGGGA
GGCGGAGCTGCGAACGGAGAAGGCATAAAGGGGGCGGAGGGACGGCAG
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