mRNA_P-fluviatile_contig13.1654.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1654.1
Unique NamemRNA_P-fluviatile_contig13.1654.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:425854..426665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.3883166-CDS-P-fluviatile_contig13:425853..4258971622815542.3883166-CDS-P-fluviatile_contig13:425853..425897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425854..425897 +
1693562203.271953-CDS-P-fluviatile_contig13:425853..4258971693562203.271953-CDS-P-fluviatile_contig13:425853..425897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425854..425897 +
1622815542.4334385-CDS-P-fluviatile_contig13:426195..4266641622815542.4334385-CDS-P-fluviatile_contig13:426195..426664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 426196..426664 +
1693562203.2798955-CDS-P-fluviatile_contig13:426195..4266641693562203.2798955-CDS-P-fluviatile_contig13:426195..426664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 426196..426664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1654.1prot_P-fluviatile_contig13.1654.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 425854..426664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1654.1

>prot_P-fluviatile_contig13.1654.1 ID=prot_P-fluviatile_contig13.1654.1|Name=mRNA_P-fluviatile_contig13.1654.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=171bp
FVAVAEFLHGVSLYRFDESSRVLALVAKHCRANLVVTALALAPPPSSTNS
GGDDENIELPTVPLIVLADRMTKKVAMLACPGLYPPTPRTSNQCSATTTP
TTSDPNKKWTCGAQEEATDSTKKLRVVSIWSCHETVTSLVATSVNPSSVD
SDNEDGEAGEYCGEFDIHCHQ
back to top

mRNA from alignment at P-fluviatile_contig13:425854..426665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1654.1 ID=mRNA_P-fluviatile_contig13.1654.1|Name=mRNA_P-fluviatile_contig13.1654.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=812bp|location=Sequence derived from alignment at P-fluviatile_contig13:425854..426665+ (Porterinema fluviatile SAG_2381)
TTTGTTGCCGTCGCAGAGTTTCTGCACGGCGTGTCGCTGTATAGGTGAGA
ACGGCTAGAAAGTTGAGCAGCTATTGGATACTTGTTGGACATACTTCATT
TGCTTACGCGGGCTGTGACCTTGTTCCAGAGTGCATTTTATGGGTAGATC
GGATGGGCCGTTTCTGCACCAGACAAGGGACATTGCCACTCGCCAGCCAT
TTCGACTTCAACACTTGACAAGACAGCAGGCTTTCCTACGACGAATCCTT
GCCAACCGGCGAGTTTGCAGCACACGATAACGGGAGTATTACAGCATGCA
CAATCGTTTCGCTGAAATGTCTTCCCCCACCAATCGACGCAGATTTGACG
AGAGCTCGAGGGTGTTGGCCTTGGTGGCGAAACACTGCAGGGCCAACCTT
GTTGTGACGGCGTTGGCGCTTGCCCCACCCCCCTCCTCAACCAACAGTGG
CGGTGATGACGAAAATATCGAATTGCCTACGGTACCACTTATTGTGCTAG
CGGATCGGATGACGAAGAAGGTGGCCATGCTGGCATGTCCTGGCCTCTAC
CCACCCACACCCAGAACGAGCAACCAATGTTCGGCAACGACCACTCCCAC
GACTTCGGACCCGAATAAAAAATGGACTTGCGGAGCTCAGGAGGAAGCGA
CGGATTCCACGAAGAAGCTGCGTGTAGTTTCTATCTGGTCATGCCACGAG
ACCGTTACATCCCTGGTTGCAACGTCTGTCAATCCGTCGTCAGTCGATTC
CGATAACGAGGACGGCGAAGCGGGCGAATATTGTGGAGAATTCGACATAC
ATTGTCACCAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:425854..426665+

>mRNA_P-fluviatile_contig13.1654.1 ID=mRNA_P-fluviatile_contig13.1654.1|Name=mRNA_P-fluviatile_contig13.1654.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1026bp|location=Sequence derived from alignment at P-fluviatile_contig13:425854..426665+ (Porterinema fluviatile SAG_2381)
TTTGTTGCCGTCGCAGAGTTTCTGCACGGCGTGTCGCTGTATAGTTTGTT
GCCGTCGCAGAGTTTCTGCACGGCGTGTCGCTGTATAGATTTGACGAGAG
CTCGAGGGTGTTGGCCTTGGTGGCGAAACACTGCAGGGCCAACCTTGTTG
TGACGGCGTTGGCGCTTGCCCCACCCCCCTCCTCAACCAACAGTGGCGGT
GATGACGAAAATATCGAATTGCCTACGGTACCACTTATTGTGCTAGCGGA
TCGGATGACGAAGAAGGTGGCCATGCTGGCATGTCCTGGCCTCTACCCAC
CCACACCCAGAACGAGCAACCAATGTTCGGCAACGACCACTCCCACGACT
TCGGACCCGAATAAAAAATGGACTTGCGGAGCTCAGGAGGAAGCGACGGA
TTCCACGAAGAAGCTGCGTGTAGTTTCTATCTGGTCATGCCACGAGACCG
TTACATCCCTGGTTGCAACGTCTGTCAATCCGTCGTCAGTCGATTCCGAT
AACGAGGACGGCGAAGCGGGCGAATATTGTGGAGAATTCGACATACATTG
TCACCAGATTTGACGAGAGCTCGAGGGTGTTGGCCTTGGTGGCGAAACAC
TGCAGGGCCAACCTTGTTGTGACGGCGTTGGCGCTTGCCCCACCCCCCTC
CTCAACCAACAGTGGCGGTGATGACGAAAATATCGAATTGCCTACGGTAC
CACTTATTGTGCTAGCGGATCGGATGACGAAGAAGGTGGCCATGCTGGCA
TGTCCTGGCCTCTACCCACCCACACCCAGAACGAGCAACCAATGTTCGGC
AACGACCACTCCCACGACTTCGGACCCGAATAAAAAATGGACTTGCGGAG
CTCAGGAGGAAGCGACGGATTCCACGAAGAAGCTGCGTGTAGTTTCTATC
TGGTCATGCCACGAGACCGTTACATCCCTGGTTGCAACGTCTGTCAATCC
GTCGTCAGTCGATTCCGATAACGAGGACGGCGAAGCGGGCGAATATTGTG
GAGAATTCGACATACATTGTCACCAG
back to top