mRNA_P-fluviatile_contig13.1949.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1949.1
Unique NamemRNA_P-fluviatile_contig13.1949.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1949.1 vs. uniprot
Match: D8LT76_ECTSI (Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT76_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -1 
Query: 1253 VIVGVFDDEACKEHHPSATAGALACNKV 1336
            VIVGVFDDEACKEHHPS+TAGALACNK 
Sbjct:  115 VIVGVFDDEACKEHHPSSTAGALACNKA 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT76_ECTSI1.820e-792.86Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT7... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3051204..3052539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1338
Cds size747
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.9451835-UTR-P-fluviatile_contig13:3051203..30517921622815537.9451835-UTR-P-fluviatile_contig13:3051203..3051792Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3051204..3051792 +
1693562174.1038754-UTR-P-fluviatile_contig13:3051203..30517921693562174.1038754-UTR-P-fluviatile_contig13:3051203..3051792Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3051204..3051792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.9602783-CDS-P-fluviatile_contig13:3051792..30525391622815537.9602783-CDS-P-fluviatile_contig13:3051792..3052539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3051793..3052539 +
1693562174.1137896-CDS-P-fluviatile_contig13:3051792..30525391693562174.1137896-CDS-P-fluviatile_contig13:3051792..3052539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3051793..3052539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1949.1prot_P-fluviatile_contig13.1949.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3051793..3052539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1949.1

>prot_P-fluviatile_contig13.1949.1 ID=prot_P-fluviatile_contig13.1949.1|Name=mRNA_P-fluviatile_contig13.1949.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=249bp
MFPAKLQFCLQPSERDDAYPNIFLRTGGSNRSPRSRAAGTTCSQLCHTSP
SSIFPHESMLGRLKLCIVPNRQPRPPRSAHRQKDWRVLKAAGTCGERIAL
FRGPATHEGPGNPRQGGQSVGNGGFGSTPDSRTARSTSHVLTPPHLVCRK
TKRPTGRGVLTNERECFRPRPRPEMHGMKRDHMGVGTRGPLGKKHDHKHS
EQLPKPCHVNVCLSTAPRRMPHLVAREGARGGAWVVLLAGFVVEDAHDH
back to top

mRNA from alignment at P-fluviatile_contig13:3051204..3052539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1949.1 ID=mRNA_P-fluviatile_contig13.1949.1|Name=mRNA_P-fluviatile_contig13.1949.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1336bp|location=Sequence derived from alignment at P-fluviatile_contig13:3051204..3052539+ (Porterinema fluviatile SAG_2381)
AGGGAGCAGGTAGGGGTCGATAAGAGATCTCGCAAAGACAACGGTGAAGC
ATGCACGGCTGATTCCAACTCTCGAAAGCTGATGCTTCTGTATGTGCGCA
AATTCCCAGGGACGGAGGTGTAGAGGGAGAAAGGGTATGCTTTTCTGTTG
AAAAGCGTGTTTCTGGACGTGCGAAGTGACGGGACGCCAGTGGGGAAGGG
GTACTCTAGGGGGTAGGGTCGTGCTAACTTGATTGTTCGCTTTCGTCGTT
TGAACGCTTACCATGCTTTCATGGCGCCCGGGACGGACGGCGCACTCTGC
TTTGTGCCATCTCTTCGTCTGTCACCGCCTATGTTTGGGCGCGCTTCTCG
CTCAGGTCTATCTCACTTCAAAGTCATTCCTCATTGTTTCCCATTCCTGT
TCGGCCTGGTGGGGCCACCGTCCAACACGTGTTACGCAAAGGCATTCGCT
CAAAATTACTTCAAAAAGGCCATCTGGAGCCGCGCAACCATCTAATTATC
ATCATCTCGAGATTCTTTCCTCCATCGGAACGTGGGCAGGCTTCGGCGTG
GGGGCGGGGCGTTGACGGACAAATTCACTGCGTCAGAGTATGTTTCCGGC
GAAACTCCAGTTTTGCCTGCAACCAAGCGAACGCGATGACGCGTATCCAA
ACATCTTCCTGAGAACTGGCGGCTCAAACAGGAGCCCAAGGTCACGAGCT
GCCGGAACGACATGTAGCCAGCTGTGCCATACTTCGCCATCCTCCATCTT
CCCACACGAGTCAATGCTTGGGCGCTTAAAATTATGTATCGTCCCGAACC
GCCAGCCCCGCCCTCCTCGATCGGCACACAGGCAGAAAGACTGGAGGGTT
CTGAAAGCCGCTGGAACGTGCGGCGAGCGTATCGCGCTGTTCAGGGGCCC
GGCAACCCACGAGGGCCCCGGTAACCCACGCCAGGGCGGACAAAGCGTCG
GCAACGGGGGGTTCGGCAGCACACCCGACTCACGAACCGCCCGGTCAACG
AGTCACGTTCTAACTCCGCCTCATTTGGTGTGTCGTAAAACCAAGCGACC
GACAGGCAGAGGAGTGCTAACAAACGAGAGGGAATGTTTTCGACCCCGCC
CTCGCCCAGAGATGCATGGGATGAAACGTGACCACATGGGGGTAGGTACA
CGAGGGCCGCTCGGGAAAAAACACGACCACAAGCATTCGGAGCAGCTCCC
GAAACCGTGTCATGTAAACGTGTGCCTAAGTACTGCACCGCGTCGCATGC
CGCACCTTGTTGCACGCGAGGGCGCCCGCGGTGGCGCTTGGGTGGTGCTC
CTTGCAGGCTTCGTCGTCGAAGACGCCCACGATCAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:3051204..3052539+

>mRNA_P-fluviatile_contig13.1949.1 ID=mRNA_P-fluviatile_contig13.1949.1|Name=mRNA_P-fluviatile_contig13.1949.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1494bp|location=Sequence derived from alignment at P-fluviatile_contig13:3051204..3052539+ (Porterinema fluviatile SAG_2381)
ATGTTTCCGGCGAAACTCCAGTTTTGCCTGCAACCAAGCGAACGCGATGA
CGCGTATCCAAACATCTTCCTGAGAACTGGCGGCTCAAACAGGAGCCCAA
GGTCACGAGCTGCCGGAACGACATGTAGCCAGCTGTGCCATACTTCGCCA
TCCTCCATCTTCCCACACGAGTCAATGCTTGGGCGCTTAAAATTATGTAT
CGTCCCGAACCGCCAGCCCCGCCCTCCTCGATCGGCACACAGGCAGAAAG
ACTGGAGGGTTCTGAAAGCCGCTGGAACGTGCGGCGAGCGTATCGCGCTG
TTCAGGGGCCCGGCAACCCACGAGGGCCCCGGTAACCCACGCCAGGGCGG
ACAAAGCGTCGGCAACGGGGGGTTCGGCAGCACACCCGACTCACGAACCG
CCCGGTCAACGAGTCACGTTCTAACTCCGCCTCATTTGGTGTGTCGTAAA
ACCAAGCGACCGACAGGCAGAGGAGTGCTAACAAACGAGAGGGAATGTTT
TCGACCCCGCCCTCGCCCAGAGATGCATGGGATGAAACGTGACCACATGG
GGGTAGGTACACGAGGGCCGCTCGGGAAAAAACACGACCACAAGCATTCG
GAGCAGCTCCCGAAACCGTGTCATGTAAACGTGTGCCTAAGTACTGCACC
GCGTCGCATGCCGCACCTTGTTGCACGCGAGGGCGCCCGCGGTGGCGCTT
GGGTGGTGCTCCTTGCAGGCTTCGTCGTCGAAGACGCCCACGATCACATG
TTTCCGGCGAAACTCCAGTTTTGCCTGCAACCAAGCGAACGCGATGACGC
GTATCCAAACATCTTCCTGAGAACTGGCGGCTCAAACAGGAGCCCAAGGT
CACGAGCTGCCGGAACGACATGTAGCCAGCTGTGCCATACTTCGCCATCC
TCCATCTTCCCACACGAGTCAATGCTTGGGCGCTTAAAATTATGTATCGT
CCCGAACCGCCAGCCCCGCCCTCCTCGATCGGCACACAGGCAGAAAGACT
GGAGGGTTCTGAAAGCCGCTGGAACGTGCGGCGAGCGTATCGCGCTGTTC
AGGGGCCCGGCAACCCACGAGGGCCCCGGTAACCCACGCCAGGGCGGACA
AAGCGTCGGCAACGGGGGGTTCGGCAGCACACCCGACTCACGAACCGCCC
GGTCAACGAGTCACGTTCTAACTCCGCCTCATTTGGTGTGTCGTAAAACC
AAGCGACCGACAGGCAGAGGAGTGCTAACAAACGAGAGGGAATGTTTTCG
ACCCCGCCCTCGCCCAGAGATGCATGGGATGAAACGTGACCACATGGGGG
TAGGTACACGAGGGCCGCTCGGGAAAAAACACGACCACAAGCATTCGGAG
CAGCTCCCGAAACCGTGTCATGTAAACGTGTGCCTAAGTACTGCACCGCG
TCGCATGCCGCACCTTGTTGCACGCGAGGGCGCCCGCGGTGGCGCTTGGG
TGGTGCTCCTTGCAGGCTTCGTCGTCGAAGACGCCCACGATCAC
back to top