prot_P-fluviatile_contig12.1610.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig12.1610.1
Unique Name	prot_P-fluviatile_contig12.1610.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	162

Homology

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.590e-67
Identity = 114/161 (70.81%), Postives = 126/161 (78.26%), Query Frame = 0

Query:    1 MKCSFLLALALRAQVGHAFVGPAGGLALSNCFSAAAGATTGILRRGVASTPSRAKASTDDGDGPVVLRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMVKAAHTD 161
            MKCS LLALA RAQ G  FVGP GGL LSNC S AA +   I+RRGVAST  +A AS +  D  V LRKPA+VEA+AER ++ K QAEAALAAFTDV+   VADG KISLQGFGTFEGR+RKGRTGRNP TG EL IK TT P F+A+KAFKDMVKAAHTD
Sbjct:    1 MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVKAAHTD 161

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A3A9GIK4_9FIRM (HU family DNA-binding protein n=2 Tax=unclassified Roseburia TaxID=2637578 RepID=A0A3A9GIK4_9FIRM)

HSP 1 Score: 93.6 bits (231), Expect = 5.130e-22
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMVKA 157
            + K  LV AMAE+  +SK  AEAAL AFTDV+   +  G+KI L GFGTFE   R  RTGRNP TGAE+TI  +  P F A KA KD+V A
Sbjct:    1 MNKTELVSAMAEKTGLSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTGRNPQTGAEMTIPASKSPKFKAGKALKDLVNA 91

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.420e-22
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMVKAAH 159
            ++K   V +++ +  +SK Q +AA++AF D +   VADGKK+SL GFGTFE R R  R GRNP TG  L+I  +  P F+AAKAFKD VK A 
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 93

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A1J1LMK7_9CYAN (DNA-binding protein HU n=13 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J1LMK7_9CYAN)

HSP 1 Score: 92.4 bits (228), Expect = 1.720e-21
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMV 155
            + K  LV+A A +  ++K QA+  ++A  D I   VADG+K++L GFG+FE R RK R GRNPSTG  +TI  TTVPVF+A KAFK+MV
Sbjct:    1 MNKEQLVQATAIKAGVTKKQADLIISAICDSIMEAVADGEKVTLVGFGSFEARERKAREGRNPSTGEPMTIPATTVPVFSAGKAFKEMV 89

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A8J6R600_9CYAN (HU family DNA-binding protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6R600_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 2.060e-21
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMV 155
            + K  LV+A+AE+ +++K QAEAAL A  DVI++ VA G K++L GFG+FE R R+ R GRNP TG  +TI  T VP F+A K FKD V
Sbjct:    1 MNKGELVDAVAEKANVTKKQAEAALTAVFDVIQATVAAGDKVTLVGFGSFEARERQAREGRNPKTGEAMTIPATKVPAFSAGKLFKDKV 89

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A0M6WKP8_9FIRM (DNA-binding protein HU n=31 Tax=Lachnospiraceae TaxID=186803 RepID=A0A0M6WKP8_9FIRM)

HSP 1 Score: 90.9 bits (224), Expect = 5.830e-21
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMVKA 157
            + K  LV AMAE+ ++SK  AEAAL AFTDV+   +  G+KI L GFGTFE   R  RTGRNP +G E+ I  +  P F A KA KDMV A
Sbjct:    1 MNKAELVAAMAEKAELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTGRNPQSGKEMVIPASKAPKFKAGKALKDMVNA 91

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A151ALX2_9CLOT (DNA-binding protein HU n=2 Tax=Clostridium TaxID=1485 RepID=A0A151ALX2_9CLOT)

HSP 1 Score: 89.7 bits (221), Expect = 1.650e-20
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMV 155
            + K  L+ +MAE+G ++K  AEAAL AF + ++  ++ G+K+ L GFGTFE R R  R GRNP T  E+TI  +TVPVF A K FKDMV
Sbjct:    1 MNKSELIASMAEKGQLTKKDAEAALKAFIESVEETLSKGEKVQLVGFGTFEVRERAERKGRNPRTKEEITIPASTVPVFKAGKEFKDMV 89

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A7S1Y344_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y344_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.310e-20
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKD 153
            +RKPALVE +AER   SK ++  A+ A  D I   VADGKK++LQGFGTF+   RK RTGRNP TG  L IK +  P F+AAK FK+
Sbjct:   66 VRKPALVEMVAERMGTSKSESTQAIEAVVDTIMEVVADGKKLNLQGFGTFKLSERKARTGRNPKTGESLEIKASKTPSFSAAKGFKE 152

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A7U9RZC3_9FIRM (DNA-binding protein HU n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A7U9RZC3_9FIRM)

HSP 1 Score: 89.4 bits (220), Expect = 2.330e-20
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMV 155
            + K  LV A+A++ ++SK  AEAAL AFTDV+   +  G+KI L GFGTFE   R  RTGRNP TGAE+ I  +  P F A KA KDM+
Sbjct:    1 MNKAELVAAIADKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTGRNPQTGAEMEIPASKAPKFKAGKALKDMI 89

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BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Match: A0A3D0HBT6_9BURK (HU family DNA-binding protein n=1 Tax=Sutterella sp. TaxID=1981025 RepID=A0A3D0HBT6_9BURK)

HSP 1 Score: 89.0 bits (219), Expect = 4.350e-20
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0

Query:   67 LRKPALVEAMAERGDMSKVQAEAALAAFTDVIKSNVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKAFKDMVKA 157
            + K  LV A+AE+  ++K QA AA+ AFTDV+ + VA  + + L GFGTF  +    RTGRNPSTGAE+ I   TVPVF A KAFKD+V A
Sbjct:    1 MNKVELVAAVAEQTGLTKAQALAAVKAFTDVVVAKVAAEEDVQLIGFGTFAAKKVAARTGRNPSTGAEIKIAAKTVPVFKAGKAFKDVVNA 91

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig12.1610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LST5_ECTSI	1.590e-67	70.81	DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28...	[more]
A0A3A9GIK4_9FIRM	5.130e-22	56.04	HU family DNA-binding protein n=2 Tax=unclassified...	[more]
A0A835Z9S8_9STRA	5.420e-22	50.54	DNA-binding protein HU n=1 Tax=Tribonema minus Tax...	[more]
A0A1J1LMK7_9CYAN	1.720e-21	53.93	DNA-binding protein HU n=13 Tax=Oscillatoriales Ta...	[more]
A0A8J6R600_9CYAN	2.060e-21	53.93	HU family DNA-binding protein n=3 Tax=unclassified...	[more]
A0A0M6WKP8_9FIRM	5.830e-21	53.85	DNA-binding protein HU n=31 Tax=Lachnospiraceae Ta...	[more]
A0A151ALX2_9CLOT	1.650e-20	51.69	DNA-binding protein HU n=2 Tax=Clostridium TaxID=1...	[more]
A0A7S1Y344_9STRA	2.310e-20	56.32	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A7U9RZC3_9FIRM	2.330e-20	52.81	DNA-binding protein HU n=3 Tax=Eubacteriales TaxID...	[more]
A0A3D0HBT6_9BURK	4.350e-20	53.85	HU family DNA-binding protein n=1 Tax=Sutterella s...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000119	Histone-like DNA-binding protein	PRINTS	PR01727	DNABINDINGHU	coord: 124..137 score: 58.26 coord: 140..154 score: 39.02 coord: 106..121 score: 44.9
IPR000119	Histone-like DNA-binding protein	SMART	SM00411	bhlneu	coord: 67..156 e-value: 4.7E-26 score: 102.5
IPR000119	Histone-like DNA-binding protein	PFAM	PF00216	Bac_DNA_binding	coord: 68..156 e-value: 6.6E-26 score: 90.3
IPR000119	Histone-like DNA-binding protein	PANTHER	PTHR33175	FAMILY NOT NAMED	coord: 67..159
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	GENE3D	4.10.520.10		coord: 67..161 e-value: 1.6E-28 score: 100.7
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	SUPERFAMILY	47729	IHF-like DNA-binding proteins	coord: 68..156
None	No IPR available	PANTHER	PTHR33175:SF3	DNA-BINDING PROTEIN HU-BETA	coord: 67..159
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..161
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.784
IPR020816	Histone-like DNA-binding protein, conserved site	PROSITE	PS00045	HISTONE_LIKE	coord: 112..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig12	contig	P-fluviatile_contig12:3510916..3514940 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig12.1610.1	mRNA_P-fluviatile_contig12.1610.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig12 3510916..3517069 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig12.1610.1 ID=prot_P-fluviatile_contig12.1610.1|Name=mRNA_P-fluviatile_contig12.1610.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
MKCSFLLALALRAQVGHAFVGPAGGLALSNCFSAAAGATTGILRRGVAST
PSRAKASTDDGDGPVVLRKPALVEAMAERGDMSKVQAEAALAAFTDVIKS
NVADGKKISLQGFGTFEGRSRKGRTGRNPSTGAELTIKPTTVPVFTAAKA
FKDMVKAAHTD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000119	Hist_DNA-bd
IPR010992	IHF-like_DNA-bd_dom_sf
IPR020816	Histone-like_DNA-bd_CS