mRNA_P-fluviatile_contig12.1524.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1524.1
Unique NamemRNA_P-fluviatile_contig12.1524.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1524.1 vs. uniprot
Match: D8LPY2_ECTSI (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.150e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 EVSLGATRGLLVHSKPAASTSASLQPPQDLSSCGVVLLPDVFGFDTLEAKEGAKILARQGYKTIVPDIYR 210
            E+SLGATRG+L   KP  + S SLQ PQDLSSC VVLLPDVFGFDT E    A++LA+QGY T+VPDIYR
Sbjct:   14 EISLGATRGILAKPKPVVAASPSLQAPQDLSSCAVVLLPDVFGFDTPETTGAARLLAQQGYNTLVPDIYR 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY2_ECTSI1.150e-2268.57DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2680154..2682112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2880.D8LPY2
Preferred nameCMBL
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0019538,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
EC3.1.1.45
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size449
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1524.1prot_P-fluviatile_contig12.1524.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2680154..2681897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.2013843-CDS-P-fluviatile_contig12:2680153..26802511622815522.2013843-CDS-P-fluviatile_contig12:2680153..2680251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2680154..2680251 +
1693562132.096514-CDS-P-fluviatile_contig12:2680153..26802511693562132.096514-CDS-P-fluviatile_contig12:2680153..2680251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2680154..2680251 +
1622815522.2176845-CDS-P-fluviatile_contig12:2681262..26813731622815522.2176845-CDS-P-fluviatile_contig12:2681262..2681373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2681263..2681373 +
1693562132.1067343-CDS-P-fluviatile_contig12:2681262..26813731693562132.1067343-CDS-P-fluviatile_contig12:2681262..2681373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2681263..2681373 +
1622815522.233251-CDS-P-fluviatile_contig12:2681872..26818971622815522.233251-CDS-P-fluviatile_contig12:2681872..2681897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2681873..2681897 +
1693562132.1227515-CDS-P-fluviatile_contig12:2681872..26818971693562132.1227515-CDS-P-fluviatile_contig12:2681872..2681897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2681873..2681897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.2496831-UTR-P-fluviatile_contig12:2681897..26821121622815522.2496831-UTR-P-fluviatile_contig12:2681897..2682112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2681898..2682112 +
1693562132.1307395-UTR-P-fluviatile_contig12:2681897..26821121693562132.1307395-UTR-P-fluviatile_contig12:2681897..2682112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2681898..2682112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1524.1

>prot_P-fluviatile_contig12.1524.1 ID=prot_P-fluviatile_contig12.1524.1|Name=mRNA_P-fluviatile_contig12.1524.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=78bp
EVSLGATRGLLVHSKPAASTSASLQPPQDLSSCGVVLLPDVFGFDTLEAK
EGAKILARQGYKTIVPDIYRFGRHPGA*
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mRNA from alignment at P-fluviatile_contig12:2680154..2682112+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1524.1 ID=mRNA_P-fluviatile_contig12.1524.1|Name=mRNA_P-fluviatile_contig12.1524.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1959bp|location=Sequence derived from alignment at P-fluviatile_contig12:2680154..2682112+ (Porterinema fluviatile SAG_2381)
GAGGTGTCTCTGGGGGCTACGCGGGGACTCCTGGTGCACTCCAAGCCCGC
GGCTTCGACGTCAGCCTCACTGCAGCCGCCGCAAGATTTGTCTTCATGGT
GGGTTTTCATCTCTCATATCTGTCTGGCTACCTACATTGCGTACTTAGGT
CCGGCCTCCTCCTCCTTCTCCTTCTCCTCTCTCCCCCCCCCGCCCTCCCC
CTCCACCTCCTGCCTTTTTTTTTTTTCGTTGTGGTGAGAAGTGAGACCCC
AGCAAGCAGGCGGCCGCCATGTCGGTGCAGTATGAAGCGTATCGATGTTG
TCGATCGACTCTCGCCTGTCGGTGACGACACCTGTGTTCGTGTTTTTCGA
CGGCGTTTGCCGAGTCGGTGTGGTCGCTGTTCGGTGGCGGAGGTGTTGGT
TTAGGCGGGCGGGTGGGCACCGCGGTCAACGCCCCGGAAGGGGTCGATCG
TCGTGACCGTGCGTGCGGCTTGGTCGCTGTAACTCTCACGGGTTGGCTGT
CCTGGCCCCCCCTGGCTTGGTCGTTGTACGTCACCCTCGCGCATTGGCCC
TGTTCGGGGATGACCCCCTCCGCTTTGTAGCGCGAGAGACAACCGCATAG
TTGAGTGTGGGGACACGGGAGAAGAGGAGTGCGGCCGTCGGCGAGGGCAG
TGCGAGGAACGGGGGTGGTTGGGGAAGGGGGTGGTTGCCCGCGGGGCATC
TACCTCTCGGCATTCACGGAAAACGAAGTCATTTTTGCCCGTGGAGTCAT
TGTGGGCAGCGGTTGCTGCTACCGTCGCCGCCACGCGTCCCATTATGATT
ATTTTCTCAAAATCACCGCTCGCGTTTCGGCTGGCGTCGACGCGTCGTGT
CGCCTTTGGGAGTGCGCTCATCGACACGAACAAATTTAAGTTCAGACGGA
GGGAAATGAATACCCCGTTCGCCGCTGTCGCCCGCCCCGTTAACTCCAAT
ACTCCGGAGTATGTTTTTTTTTTTCCTCGCTTGCCCGTAGCCTGACGGCT
GGCCGTCTGCCCCCTCCCTGGCTGTGTCGCCGCGTGTTCCAACTTCGCGT
CCCTCCCGCGTCTCTTTTGCCTCTCCCGGCATCCCATTCCGCTCTCCTTC
CCTTCCTAGCGGCGTGGTGTTGCTTCCCGACGTGTTCGGTTTCGACACGC
TAGAGGCCAAGGAAGGGGCGAAGATATTGGCTCGGCAGGGATACAAAACG
ATAGTGCCGGACATTTATCGGTGAGGGGGGGGTGGGGGGGGATAGTGAGA
CAGATGGGTCTGTCTTTGCTGCTGCCTTTGCTGCTGCTGCTGTTAATGTT
GTCGTTGTTGTTGATGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGG
CAGTGTCGGTCGTGGTGTTGTTTTAGATGCTGCTTGTTAGTCTTATGATG
TCGATGAAAAGAGACGTACGCTCTTCGCCCGAAGGACGTAGCAGCCTCTC
CCCGAGGGGGGAGAGGGGGGCTTGGATGCTTCGAATATCTTCGTCGGAAG
GTTGTACGTTTGTTCGTTTGTGCCCCGGCGAGTCGCCGCAGTTTAGCCAC
ACGTAGGTTGCGGATGCACCCATCCGACTCGGAGACTGAAATTGTCTCCG
GTCTTTCGTATGATGATGGCCGCTTGAGCCCGTGCCGACCTCTCTGGTGT
ACTTCAAGAGTAGTAGTCGGTGAGTCACTCCTCATTCGCAACGTGTCTCT
GATGGGGAACCACGTCCAGATTCGGAAGACATCCCGGCGCATGACTCTGA
GGCCACAGCACACCCGCCGAACAACAACAGCAGGCGACGGCACTGCGTAG
GAATGGCTTCTCCATCGTGCTTTGTTTCGATTGCCTTGAGACAATGGTGC
CCATCGGAAACCGGCGGAACTGGTTACGACTGGTCTCAGCACTGTTTGGT
GCGTTTCTCCATCTCTCATGTTTCTGTCACTCTTGCGAAGTTTAGTGGAT
CTGTCGTGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2680154..2682112+

>mRNA_P-fluviatile_contig12.1524.1 ID=mRNA_P-fluviatile_contig12.1524.1|Name=mRNA_P-fluviatile_contig12.1524.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=468bp|location=Sequence derived from alignment at P-fluviatile_contig12:2680154..2682112+ (Porterinema fluviatile SAG_2381)
GAGGTGTCTCTGGGGGCTACGCGGGGACTCCTGGTGCACTCCAAGCCCGC
GGCTTCGACGTCAGCCTCACTGCAGCCGCCGCAAGATTTGTCTTCATGGA
GGTGTCTCTGGGGGCTACGCGGGGACTCCTGGTGCACTCCAAGCCCGCGG
CTTCGACGTCAGCCTCACTGCAGCCGCCGCAAGATTTGTCTTCATGCGGC
GTGGTGTTGCTTCCCGACGTGTTCGGTTTCGACACGCTAGAGGCCAAGGA
AGGGGCGAAGATATTGGCTCGGCAGGGATACAAAACGATAGTGCCGGACA
TTTATCGCGGCGTGGTGTTGCTTCCCGACGTGTTCGGTTTCGACACGCTA
GAGGCCAAGGAAGGGGCGAAGATATTGGCTCGGCAGGGATACAAAACGAT
AGTGCCGGACATTTATCGATTCGGAAGACATCCCGGCGCATGAATTCGGA
AGACATCCCGGCGCATGA
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