mRNA_P-fluviatile_contig12.1522.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1522.1
Unique NamemRNA_P-fluviatile_contig12.1522.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1522.1 vs. uniprot
Match: D8LPX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.740e-34
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 3 
Query:  285 MEYKVLHLEAALMRSELDLCRAKTELISVRQEAHELRTAKDAEEKSRPTST----DIPALYHALEGSVVLLQIASEKMLHLERAIARHREILPDHVFEELRDCVTQDASLLSPIP 617
            M+ +V+HLEAAL+RSELDLCRA+TEL + R+EA  L  AKDA    R        DIPALYHALEGSVVLLQIASEKML LE  IA+HRE +P +++ EL+DCVTQDA LLSP+P
Sbjct:    1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRYLYRELQDCVTQDAMLLSPLP 115
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BLAST of mRNA_P-fluviatile_contig12.1522.1 vs. uniprot
Match: A0A6H5KJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.080e-24
Identity = 68/118 (57.63%), Postives = 80/118 (67.80%), Query Frame = 3 
Query:  276 VAGMEYKVLHLEAALMRSELDLCRAKTELISVRQEAHEL----RTAKDAEEKSRPTSTDIPALYHALEGSVVLLQIASEKMLHLERAIARHREILPDHVFEELRDCVTQDASLLSPIP 617
            VAGM+ +V+HLEAAL+RSELDLCR                     A D  ++      DIPALYHALEGSVVLLQIASEKML LE  IA+HRE +P H++ EL+DCVTQDA LLSP+P
Sbjct:  628 VAGMKNRVMHLEAALVRSELDLCRXXXXXXXXXXXXXXXXXXXEAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLCLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLP 745
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPX8_ECTSI2.740e-3465.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJF2_9PHAE1.080e-2457.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2654238..2657991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001750.1
Exons3
Model size2797
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1522.1prot_P-fluviatile_contig12.1522.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2654510..2655922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.947003-UTR-P-fluviatile_contig12:2654237..26545091622815521.947003-UTR-P-fluviatile_contig12:2654237..2654509Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2654238..2654509 +
1693562131.7658727-UTR-P-fluviatile_contig12:2654237..26545091693562131.7658727-UTR-P-fluviatile_contig12:2654237..2654509Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2654238..2654509 +
1622815522.0049462-UTR-P-fluviatile_contig12:2655922..26579911622815522.0049462-UTR-P-fluviatile_contig12:2655922..2657991Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2655923..2657991 +
1693562131.8088317-UTR-P-fluviatile_contig12:2655922..26579911693562131.8088317-UTR-P-fluviatile_contig12:2655922..2657991Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2655923..2657991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.9627054-CDS-P-fluviatile_contig12:2654509..26546411622815521.9627054-CDS-P-fluviatile_contig12:2654509..2654641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2654510..2654641 +
1693562131.773704-CDS-P-fluviatile_contig12:2654509..26546411693562131.773704-CDS-P-fluviatile_contig12:2654509..2654641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2654510..2654641 +
1622815521.9763138-CDS-P-fluviatile_contig12:2655261..26553451622815521.9763138-CDS-P-fluviatile_contig12:2655261..2655345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2655262..2655345 +
1693562131.7862198-CDS-P-fluviatile_contig12:2655261..26553451693562131.7862198-CDS-P-fluviatile_contig12:2655261..2655345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2655262..2655345 +
1622815521.9918509-CDS-P-fluviatile_contig12:2655682..26559221622815521.9918509-CDS-P-fluviatile_contig12:2655682..2655922Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2655683..2655922 +
1693562131.800342-CDS-P-fluviatile_contig12:2655682..26559221693562131.800342-CDS-P-fluviatile_contig12:2655682..2655922Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2655683..2655922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1522.1

>prot_P-fluviatile_contig12.1522.1 ID=prot_P-fluviatile_contig12.1522.1|Name=mRNA_P-fluviatile_contig12.1522.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MVAGMEYKVLHLEAALMRSELDLCRAKTELISVRQEAHELRTAKDAEEKS
RPTSTDIPALYHALEGSVVLLQIASEKMLHLERAIARHREILPDHVFEEL
RDCVTQDASLLSPIPGAHTLQPPQQQQQWRPREQPQRQGPQREFQRRRQQ
T*
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mRNA from alignment at P-fluviatile_contig12:2654238..2657991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1522.1 ID=mRNA_P-fluviatile_contig12.1522.1|Name=mRNA_P-fluviatile_contig12.1522.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3754bp|location=Sequence derived from alignment at P-fluviatile_contig12:2654238..2657991+ (Porterinema fluviatile SAG_2381)
TAGTATCTCGCTGTCCACAGATCGATCTccCCCCGGCGGGAGGGGGCAGC
GCATCATCGGACAGCGGCGTGGGCCGAGGGCAAGGCGGTCAGAGCGGGCG
GAGTTTTCCGTGGCCGCGGAGGAAGTACAGCGGCGAGTCCCCCTCCGCCG
CCGGCGGGTCGACGGCGGTGGCGGCACTGTTGCCGGCCGGGAACGCCGGG
AGCGGGGTCGCCGGCGGCAACGGGAATCGGTCAGCCTTGCCGCCGCCAGC
AGCAGCGGAGGAGGCGAAGAAGATGGTGGCCGGGATGGAGTACAAGGTGC
TGCACCTCGAAGCGGCCCTGATGCGATCGGAGCTGGACCTCTGCCGGGCG
AAGACCGAGCTGATCTCGGTCCGGCAGGAGGCGCACGAGCTGAGGACGGC
CAAGGTGTGGTGCGGAAGTGTGTGTTTCGCAGCAGTCTCTTGTGCGTGTG
TCTCTTCATTAGCGTTGATCGCGCTGATGGCGTGATCAATGAAAGTACGT
CGGTCTTGGCGGGTTCTACGAAGAGAACGATTGCTTGTTCTAAACCACGG
AGCTCCCAGAAAAGAGTGACCGCGACAATGCTAGGGTGTTCCCTGCTCCA
AACCGTTCTCAACGCTGTCAGGATGGAATCCCTTGGTGTGTCGTGCGTTT
GTCGTTGTCTCGCGTGTGCAGCAGCTCATCGTGTGTGTATTACTTGTTGT
TTGTGTCTCAGCTTCCAAGTCCACTCATGTCACTGTCTGTGTGGCCTTTT
TCCACTCATCGAACGCCGGCAACGTCACACCGTTGTGGGAGATTTTGGTA
CCCACTTTCCACTCTCATGTGCCCCCTACCCCAATAAGCTCGTTGAAAGC
AAGAACCACAACCTAATCGAAGGCATACACTTTGAGCCGGACTCACGGTG
ATCGTAGCATCCCTAATAGAGATAATTACGTTCGGCTGTCATTGTCCACC
GCGTTGTCCAGTCAATGCTCATCTCGTTCTGTCCACACACCCTATCATCC
GTTTTTGCGAACTCTTGTCCAAAGGATGCGGAAGAAAAATCGAGGCCGAC
CTCAACCGACATCCCGGCTCTCTACCACGCGCTTGAGGGTTCTGTGGTGC
TGCTGCAGGTGAGATTGTACGGCCGTGCAGGTGGTCACGGGCTCAACCCA
GGGTTCTGTTGTGTCCAGCAGGAGGAGGGTTCGGGGGCTTTTCGTCGCGG
TTTCGAGCGAGGGAGGCCTTCAACGCGATTTCCAACCGGAGGCGGCGTGC
TTCCCTTGCCGGAATCCTTGCAGGGTTGTTTGTTCCCATGTGCAGTCGCG
AGCTGCACGCGTGAAGAGTCACATGTGGGGGCTGTGGGTGTTGTGAATTC
TACACCACGTTTTTCCCTCCCCTTGTCCGTTGCTCGTGACAAAAGAACAA
ACCACTCAACTTCCCGTGGACATGCGTGCAAAAAAAATAATGCAGATCGC
CTCGGAGAAGATGCTTCACCTGGAGCGGGCGATCGCCAGGCACCGGGAAA
TATTGCCGGACCACGTGTTCGAGGAGCTTCGGGACTGTGTCACCCAAGAC
GCGTCGCTGCTGTCGCCGATTCCAGGCGCGCACACGTTGCAGCCGCCGCA
GCAGCAGCAGCAGTGGCGCCCGCGAGAACAACCACAGCGGCAGGGGCCTC
AGCGGGAGTTTCAGCGACGTCGCCAGCAGACTTGATGAGCCAGGTAGTAG
TGGCACAGCGCGCAGCGGCAGCTGCCATTTTCGCCCGCTTGCGCGCGAGC
CAATCCAACAGCAGCAGCAGGCGTGAGCCTATGCTCCCTGCGAAAGCTAG
CTTGTTTTGCAGCGGGAGAGCGTCGGCAAGGACGGCGTCCGGCGGCTTCA
GGCACAGCATACAGACGGCCAGACGGATAATTCACCAGCATTTAGGCATT
TTGCTTGACAATCGAGCCTCCGTTTCTCGTAGCCGCGTTGATTTTGTGAG
CGGGCCGCTACTGCCTGTGGGTGCAAGGGGACCGATGAGTGTGAAGCGTC
TACTTACCCGATCGACCCCCAGCAGAGGACGGCTCGGACGAGAGGATGTG
TGTGTCGGGATCCGCAGTAACAGCAGGCAATACGTTTCCCCCTGTACAGA
GGGTGCGGGAGAAACTGTCACAAGAAGTTGTTATACGCGAGTTTCACCAC
ATGGCGGCGGAGATTTTTGGCAGCTGCAACAGTTGTTCAGCCCATTTCGA
CGAGTGTCACCACGTGGTGACGCACTTACGCTGTCGCCGCAATTTCCGGC
GGTAGTGGCCCGCCAGTTTCGCCGCGAAGTAGAGCATTTTAGCTGCCGAA
GCAGCCTCAAGAGGTTGGTCGGCAGGGTTGGGCCACCGGTCGATGCCTTG
GCGTCCTTTAGCTCCCCATTGGCACGCGATCGAGACAAGACGCGGCGGGC
AGATCGCCACCCCCCCTCCGACGCGGCACTTTGTCCCTAGGTTTTTCCCC
GGCCGACTGAACATTTTTTCCCTTTTTTGTTCTCTTCATTTTTTGTTCTC
TCTTTTGTTCCCCTTTGATTTCGTATCACGTGCTGATTGGGCGGAGACGG
CGAGGGCAGTAGCTTCGGGCTTGAGCTTTCGTGTGTTTCAGGGCACCACC
GTGCGCGGAGCTGTACGCGGGCGTGTTGTAAAGTGAACGTGTTGTGTAGA
CGAGTTGATCCAGCGACCGTGTGTGGAGGGGGGCGACCTGTTTCTTGGTT
TCTTGTTGTCAGTGTTACCGATGTTCTCTATTTCTTTGGAATGATTTATG
TTGTTCGACCGAGTTGGTTGGTAGTTTCATGTTCGAGGTCGGTCGCGTAT
TTTTCTTTGTATCTAGATGAGGAACGGCGACGCGGAGCCCGGCTTTTGAT
GTGAGGCCTTTCGACAATTTCGCGGCTGGCTTTGTCAGCCAGTTGTTTGC
TCCCCATCCACCCAGAGGCGTGACAGGCCTACCTAAGACTGTGATGATAA
GTAGGCCGTCAGCAGGCCCGCGAAGCGATGTCTCGAAAATTGTGGATCGG
CGAGGGCTTGGGCAGTGGTAGTCACACCAACAAGGCGAGGCAGTACGGCA
GACAGGAAGACGGACAGGCTGGGGGCAGGCTGGGCGGGCAGGCAGGCTGG
CAGCAAGTCGTATGACGAATCCTTGAAGTGAACTGAAATGTAGCGGCGTT
TGCGTGAACTGGCACAAAGCGGCGTTCGCGGGTGTTCGAAAGGCCGTCCG
CTGATTTTTACTTGCCTTTTCCTTCATGCCTCTAGTGGGTGGCTTCTTAG
TTAGAAATCAGGGGTAGATGGTGCAGGTTCCTGAAAAATGAAACTTCGCG
GGACAGCTTAGGCCACGGAACAAGTCGATCGATGTTGGTGGGTCGGCGGG
CGGTTGGATGGGTGTTGGGGTTGCGCCTTTTTAAGTTTATTATGTACCTT
GACGTTTTGTGTTCATTACTGGTTTTGAGTTCTGTCTTCCTCCAAGAGTC
ATCCACCTCGTCCCCCACCCCCTTTCCATTGTGTCCTGCCTGTGTTAGTC
GTTCGGAGTGAAGCATCGGGTGCATCTTTGTGATGAAGGATCATTCCCGA
TAATATCTATCTGTCCTCCACGCCGAGGTTTGAACGCCTGCCCTCCCACC
CTCCTGATGGCTGTGCTGCAGTGTTACGGGAACGGTCTTCTCTCGAGGTG
GTTGCAACTCCCCCTTGCACCGCGGGTAGGGCTGCCGGCTGCTGGTTCCC
GTCCACACTAGGAACGAGCGAATTCGCGGGACAAGAACAACAATATCTGT
CGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2654238..2657991+

>mRNA_P-fluviatile_contig12.1522.1 ID=mRNA_P-fluviatile_contig12.1522.1|Name=mRNA_P-fluviatile_contig12.1522.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig12:2654238..2657991+ (Porterinema fluviatile SAG_2381)
ATGGTGGCCGGGATGGAGTACAAGGTGCTGCACCTCGAAGCGGCCCTGAT
GCGATCGGAGCTGGACCTCTGCCGGGCGAAGACCGAGCTGATCTCGGTCC
GGCAGGAGGCGCACGAGCTGAGGACGGCCAAGATGGTGGCCGGGATGGAG
TACAAGGTGCTGCACCTCGAAGCGGCCCTGATGCGATCGGAGCTGGACCT
CTGCCGGGCGAAGACCGAGCTGATCTCGGTCCGGCAGGAGGCGCACGAGC
TGAGGACGGCCAAGGATGCGGAAGAAAAATCGAGGCCGACCTCAACCGAC
ATCCCGGCTCTCTACCACGCGCTTGAGGGTTCTGTGGTGCTGCTGCAGGA
TGCGGAAGAAAAATCGAGGCCGACCTCAACCGACATCCCGGCTCTCTACC
ACGCGCTTGAGGGTTCTGTGGTGCTGCTGCAGATCGCCTCGGAGAAGATG
CTTCACCTGGAGCGGGCGATCGCCAGGCACCGGGAAATATTGCCGGACCA
CGTGTTCGAGGAGCTTCGGGACTGTGTCACCCAAGACGCGTCGCTGCTGT
CGCCGATTCCAGGCGCGCACACGTTGCAGCCGCCGCAGCAGCAGCAGCAG
TGGCGCCCGCGAGAACAACCACAGCGGCAGGGGCCTCAGCGGGAGTTTCA
GCGACGTCGCCAGCAGACTTGAATCGCCTCGGAGAAGATGCTTCACCTGG
AGCGGGCGATCGCCAGGCACCGGGAAATATTGCCGGACCACGTGTTCGAG
GAGCTTCGGGACTGTGTCACCCAAGACGCGTCGCTGCTGTCGCCGATTCC
AGGCGCGCACACGTTGCAGCCGCCGCAGCAGCAGCAGCAGTGGCGCCCGC
GAGAACAACCACAGCGGCAGGGGCCTCAGCGGGAGTTTCAGCGACGTCGC
CAGCAGACTTGA
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