mRNA_P-fluviatile_contig91.15437.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig91.15437.1
Unique Name	mRNA_P-fluviatile_contig91.15437.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5K903_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K903_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 5.640e-58
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

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BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5L3W3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W3_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.460e-57
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

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BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5JXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX2_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 5.820e-56
Identity = 107/117 (91.45%), Postives = 109/117 (93.16%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFG VQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGNVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5JFV4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV4_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.700e-55
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5JVS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS5_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 5.380e-55
Identity = 107/117 (91.45%), Postives = 109/117 (93.16%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MA RRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MACRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5J739_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J739_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.860e-53
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5J8R8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R8_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.020e-53
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSD 387
            MAGRRTGGTTPDGSQAGDTNSS+QIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSD
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSKQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSD 114

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5K119_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K119_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.020e-53
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.700e-53
Identity = 108/117 (92.31%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQL+Q+VGGLAARIEEKSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLAARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

[Close]

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Match: A0A6H5KZG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG8_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.940e-52
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 1

Query:   40 MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQYSGSVPQAADLRRESGPSGRHSGEAGGSDP 390
            MAGRRTGGTTPDGSQAGDTNSSEQIDS+R EISSLTQQMGQL+ +VGGLAARIE+KSGGATEGAAES GAVESVATS AGHFGTVQ Y GS  QAADLRRESGPSGRHSGE GGSDP
Sbjct:    1 MAGRRTGGTTPDGSQAGDTNSSEQIDSLRYEISSLTQQMGQLVPLVGGLAARIEDKSGGATEGAAESGGAVESVATSTAGHFGTVQ-YDGSA-QAADLRRESGPSGRHSGEVGGSDP 115

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig91.15437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K903_9PHAE	5.640e-58	92.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3W3_9PHAE	3.460e-57	92.31	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXX2_9PHAE	5.820e-56	91.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFV4_9PHAE	1.700e-55	92.31	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JVS5_9PHAE	5.380e-55	91.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J739_9PHAE	1.860e-53	92.31	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5J8R8_9PHAE	2.020e-53	91.38	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K119_9PHAE	4.020e-53	92.31	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KF65_9PHAE	6.700e-53	92.31	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KZG8_9PHAE	2.940e-52	88.89	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig91	contig	P-fluviatile_contig91:40697..41086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	390
Cds size	390
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817356.8759296-CDS-P-fluviatile_contig91:40696..41086	1622817356.8759296-CDS-P-fluviatile_contig91:40696..41086	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig91 40697..41086 +
1693572213.4972732-CDS-P-fluviatile_contig91:40696..41086	1693572213.4972732-CDS-P-fluviatile_contig91:40696..41086	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig91 40697..41086 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig91.15437.1	prot_P-fluviatile_contig91.15437.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig91 40697..41086 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig91:40697..41086+
coding sequence from alignment at P-fluviatile_contig91:40697..41086+

protein sequence of mRNA_P-fluviatile_contig91.15437.1

>prot_P-fluviatile_contig91.15437.1 ID=prot_P-fluviatile_contig91.15437.1|Name=mRNA_P-fluviatile_contig91.15437.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
NTLVFIPRGSPLGMAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQ
QMGQLMQMVGGLAARIEEKSGGATEGAAESSGAVESVATSPAGHFGTVQQ
YSGSVPQAADLRRESGPSGRHSGEAGGSDP

mRNA from alignment at P-fluviatile_contig91:40697..41086+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig91.15437.1 ID=mRNA_P-fluviatile_contig91.15437.1|Name=mRNA_P-fluviatile_contig91.15437.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig91:40697..41086+ (Porterinema fluviatile SAG_2381)
AACACACTAGTGTTTATCCCTCGAGGGAGTCCATTAGGGATGGCGGGCCG
CAGAACCGGAGGGACAACTCCGGACGGCTCGCAGGCAGGAGACACAAATA
GCAGCGAGCAGATCGACAGCATGCGGTCTGAAATCAGTTCGCTGACACAG
CAAATGGGCCAGCTGATGCAGATGGTAGGAGGACTTGCTGCACGCATAGA
GGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAGCAGCGGCGCCG
TGGAGAGCGTCGCCACAAGCCCTGCAGGTCATTTTGGGACCGTACAGCAG
TACAGCGGGAGCGTACCGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCC
TTCGGGACGACACAGCGGCGAAGCAGGGGGCTCAGACCCC

Coding sequence (CDS) from alignment at P-fluviatile_contig91:40697..41086+

>mRNA_P-fluviatile_contig91.15437.1 ID=mRNA_P-fluviatile_contig91.15437.1|Name=mRNA_P-fluviatile_contig91.15437.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig91:40697..41086+ (Porterinema fluviatile SAG_2381)
AACACACTAGTGTTTATCCCTCGAGGGAGTCCATTAGGGATGGCGGGCCG
CAGAACCGGAGGGACAACTCCGGACGGCTCGCAGGCAGGAGACACAAATA
GCAGCGAGCAGATCGACAGCATGCGGTCTGAAATCAGTTCGCTGACACAG
CAAATGGGCCAGCTGATGCAGATGGTAGGAGGACTTGCTGCACGCATAGA
GGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAGCAGCGGCGCCG
TGGAGAGCGTCGCCACAAGCCCTGCAGGTCATTTTGGGACCGTACAGCAG
TACAGCGGGAGCGTACCGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCC
TTCGGGACGACACAGCGGCGAAGCAGGGGGCTCAGACCCCAACACACTAG
TGTTTATCCCTCGAGGGAGTCCATTAGGGATGGCGGGCCGCAGAACCGGA
GGGACAACTCCGGACGGCTCGCAGGCAGGAGACACAAATAGCAGCGAGCA
GATCGACAGCATGCGGTCTGAAATCAGTTCGCTGACACAGCAAATGGGCC
AGCTGATGCAGATGGTAGGAGGACTTGCTGCACGCATAGAGGAGAAGTCC
GGCGGTGCCACGGAGGGCGCCGCTGAAAGCAGCGGCGCCGTGGAGAGCGT
CGCCACAAGCCCTGCAGGTCATTTTGGGACCGTACAGCAGTACAGCGGGA
GCGTACCGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCCTTCGGGACGA
CACAGCGGCGAAGCAGGGGGCTCAGACCCC