mRNA_P-fluviatile_contig91.15435.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig91.15435.1
Unique NamemRNA_P-fluviatile_contig91.15435.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 7.050e-41
Identity = 88/232 (37.93%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   43 EIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTP-VFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQTS 735
            EI G    G FT + +LP+G KA+GS+ VF+++ +++G I+  K+R++A+G+ Q  G+DF  + +  P+ A +K V+ VA E+G ++ H DV QA+I A L     ++F    G +SGK V + +ALYGLKQSG          L++    + Q  + P VFR + +G++  ++  +VDDI V   EGE E+L   L + F    LGE + + GCA A D E G  K++QT+
Sbjct:    4 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIE--NGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGEREELFASLNKKFPVESLGEYTWYDGCAIAMDVENGITKLSQTA 233          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.810e-31
Identity = 74/214 (34.58%), Postives = 122/214 (57.01%), Query Frame = 1
Query:   88 DLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            D  +G   + ++ V++++ D+ G  ++ K RLVA+G+ QREGVDFF T +P P++  ++++  +A  + + + H D  QAF+++ LD  V ++    CG LSGK V L + LYGLKQ+    +  L+  + K  G    +    V RLI  G + +++  HVDDI   GL+   ++    L      ++LGEL  + GC F++D   GTV I+Q
Sbjct:  816 DKARGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTWHHHLMRGM-KSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPVSNLGELRWYAGCRFSRDTVLGTVTISQ 1028          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.260e-31
Identity = 79/240 (32.92%), Postives = 129/240 (53.75%), Query Frame = 1
Query:   10 HRGAWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            H   W  A   E  GL  +G F    +  +G   + ++ V++++ D+ G  ++ K RLVA+G+ QREGVDFF T +P P++  ++++  +A  + +   H    QAF+++ LD  V ++    CG  SGK V L ++LYGLKQ+    +  L+  + K  G    +    V RLI  G + +++  HVDDI   GL+   ++    L      ++LGEL  + GC F++D   GTV I+Q
Sbjct: 1380 HHHIWTNAERKEFFGLNAVGTF----EEQRGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGLKQASRTWHHHLMRGM-KSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQ 1614          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.200e-31
Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 1
Query:    4 SRHRGAWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTP-VFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQTS 735
            S+++  WEAA+  EI G    G FT + +L +G+KA GS+ V +++ + +G I                 VDF    AP+     +K V+ VA E G ++ H DV QA+I A L   + ++F G CG +SGK V +  ALYGLKQSG        + L++    + Q  + P VFR + +G++  ++  +VDDI V   EG  E+L   L +     DLGE +L+ GCA A D E G  K++QT+
Sbjct:  260 SKYKVFWEAAMKKEIDGHDKTGTFTKVKELYEGQKATGSKWVLSWKTNDKGLI-----------------VDF---KAPS-----IKTVIAVASEKGKKLAHWDVKQAYIHAKLKDELYLRFPGGCGSMSGKVVNVESALYGLKQSGREWGFEAADALIE--DGYEQYRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGGREELFASLNKKSPVKDLGECTLYDGCAIAMDVENGITKLSQTA 477          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.260e-31
Identity = 79/240 (32.92%), Postives = 129/240 (53.75%), Query Frame = 1
Query:   10 HRGAWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            H   W  A   E  GL  +G F       +G   + ++ V++++ D+ G  ++ K RLVA+G+ QREGVDFF T +P P++  ++++  +A  + + +   D  QAF+++ LD  V ++    CG LSGK V L ++LYGLKQ+    +  L+  + K  G    +    V RLI  G + +++  HVDDI   GL+   ++    L      ++LGEL  +  C F++D   GTV I+Q
Sbjct: 1262 HHHIWTNAERKEFFGLNAVGTFE-----ERGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGM-KSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYADCRFSRDTVLGTVTISQ 1495          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.670e-30
Identity = 86/242 (35.54%), Postives = 131/242 (54.13%), Query Frame = 1
Query:    4 SRHRGAWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            S HR     ++  E  GL + G  T        E A+  + VF ++ D+ G   K K+RLVA+G MQRE +DF    APT +V+ ++++  +A E+   + H D+ QAF+++ L+  V M+    CG LSG  V L K+LYGL+Q+    + +L   LV + G         VFRLI +G + LIL  HVDDI   G     +KL   L +  T  +L EL  ++GC + +++E G + I+Q
Sbjct:  632 SGHRHLRSDSMQREFYGLLEAGTCTPAKQ-QLVENAINDKWVFDWKADEFGWPTKVKSRLVARGDMQREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRSPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVAL-GFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERETCDKLGADLNKSVTVKNLEELRWYSGCFYERNKETGRLTISQ 871          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A284S5Y9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S5Y9_ARMOS)

HSP 1 Score: 132 bits (333), Expect = 2.800e-30
Identity = 81/240 (33.75%), Postives = 132/240 (55.00%), Query Frame = 1
Query:   22 WEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEV---LKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQT 732
            W+ A+D EI  +Q++G +T L+DL K  +A+GS+ VF+ + D+ GN+   K RLVA+GY Q  GVDF+ T AP   +  ++  + +A      +  +DV  A++   L+  + M+      + SG+   LHK LYGLKQSG   N      ++ +     +     V++ IR+G++ +I T  VDD+ +      +E + EV   L++ F  NDLGE     G    +D+E GT+ ++QT
Sbjct:  571 WKRAMDEEIHTIQEMGTYT-LEDLLKEREAIGSKWVFSKKYDENGNVSCYKARLVAQGYSQIPGVDFYETFAPVVRLESVRAALGIAAIKNLEISQMDVKGAYLNGELEEEIFMRQPQDYDDRSGRVCRLHKILYGLKQSGHEWNREFNRNMMDIRFSRLEVDHC-VYKRIRDGRMTVI-TVWVDDLLI--FTETIEDMAEVKGELQKLFDVNDLGEPKKIIGIEIERDQENGTIALSQT 805          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.410e-30
Identity = 74/209 (35.41%), Postives = 119/209 (56.94%), Query Frame = 1
Query:  103 EKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            +  + S+L+F +++D  G   K K RLVA+G MQ+E +DF    APT A + ++++  +A E+   + H D+ QAF++APL+  + M+    CG LSGK V L+K+LYGL+Q+      LL   L+ + G       + +FR +  G++ L+L  HVDDI   G +   ++  + L E      LGEL  ++GC +  D E G + I+Q
Sbjct:  148 DNCIKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLAL-GFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQ 355          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A5N6PWF2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PWF2_9ASTR)

HSP 1 Score: 129 bits (323), Expect = 6.700e-30
Identity = 84/241 (34.85%), Postives = 136/241 (56.43%), Query Frame = 1
Query:   19 AWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVL---LHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAV-GGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            +W+AA+ AEI+ +     +T++  LP   KA+G + V+  + D  GNI + K  LVAKGY+Q++G+DF    AP   +  +++++ +A +  + + HLDV  AFI   L   V +    +  E+ GK  +   LHKALYGL+Q+ P    L + K +K  G H  +    V++L + G + LI+  +VDD+ V G  E  + +  E +K  F  +DLG+LS + G    QDE  G++ +NQ
Sbjct:   63 SWKAAMQAEIEAIHKDKTWTLVQ-LPSNHKAIGLKWVYKLKKDANGNITRHKACLVAKGYVQKKGIDFEEAFAPAARIETIRLILAMAAKDKWVVHHLDVKSAFINGDLQEEVYVTQ-PKGFEVKGKESMVFKLHKALYGLRQA-PRAWNLKLEKSLKDKGFHKCAQEQAVYKLHKTGSI-LIVGVYVDDLIVTGSSERVIYEFKEKMKVVFEMSDLGKLSYYLGIEVCQDE--GSITLNQ 297          
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.460e-29
Identity = 80/240 (33.33%), Postives = 122/240 (50.83%), Query Frame = 1
Query:   10 HRGAWEAAVDAEIKGLQDLGKFTVLDDLPKGEKAVGSRLVFAYEIDKEGNIIKPKTRLVAKGYMQREGVDFFRTSAPTPAVAWMKVVMVVAKEIGFRMRHLDVAQAFIKAPLDTRVIMKFCGRCGELSGKYVLLHKALYGLKQSGPLCNELLVNKLVKVHGMHGQSPLTPVFRLIREGKLALILTAHVDDIAVGGLEGEVEKLLEVLKEGFTTNDLGELSLFTGCAFAQDEEGGTVKINQ 729
            H   W  A   E  GL  +G F                     E D+ G  ++ K RLVA+G+ QREGVDFF T +P P++  ++++  +A  + + + H D  QAF+++ LD  V ++    CG LSGK V L ++LYGLKQ+    +  L+  + K  G    +    V RLI  G + +++  HVDDI   GL+   ++    L      ++LGEL  + GC F++D   GTV I+Q
Sbjct:   96 HHHIWTNAERKEFFGLNAVGTFE--------------------EGDEFGYAVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGM-KSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQ 314          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig91.15435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4A4_9PHAE7.050e-4137.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV09_9PHAE2.810e-3134.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE3.260e-3132.92Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KAM7_9PHAE4.200e-3135.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBJ6_9PHAE4.260e-3132.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP2_9PHAE1.670e-3035.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A284S5Y9_ARMOS2.800e-3033.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K307_9PHAE5.410e-3035.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PWF2_9ASTR6.700e-3034.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE1.460e-2933.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig91contigP-fluviatile_contig91:31179..32432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1108
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig91.15435.1prot_P-fluviatile_contig91.15435.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig91 32199..32432 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.7684855-UTR-P-fluviatile_contig91:31178..316871622817356.7684855-UTR-P-fluviatile_contig91:31178..31687Porterinema fluviatile SAG_2381UTRP-fluviatile_contig91 31179..31687 +
1693572208.1896937-UTR-P-fluviatile_contig91:31178..316871693572208.1896937-UTR-P-fluviatile_contig91:31178..31687Porterinema fluviatile SAG_2381UTRP-fluviatile_contig91 31179..31687 +
1622817356.779326-UTR-P-fluviatile_contig91:31833..321981622817356.779326-UTR-P-fluviatile_contig91:31833..32198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig91 31834..32198 +
1693572211.8551214-UTR-P-fluviatile_contig91:31833..321981693572211.8551214-UTR-P-fluviatile_contig91:31833..32198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig91 31834..32198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.7895727-CDS-P-fluviatile_contig91:32198..324321622817356.7895727-CDS-P-fluviatile_contig91:32198..32432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig91 32199..32432 +
1693572213.453173-CDS-P-fluviatile_contig91:32198..324321693572213.453173-CDS-P-fluviatile_contig91:32198..32432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig91 32199..32432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig91.15435.1

>prot_P-fluviatile_contig91.15435.1 ID=prot_P-fluviatile_contig91.15435.1|Name=mRNA_P-fluviatile_contig91.15435.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=78bp
MCLVVMTRLDIANAVRAEGRHSLDPTERHSKAVIHIIQYLLGTKDLGLTF
ERGTGFELTLFTDSDGAEKSNDRRSVSG
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mRNA from alignment at P-fluviatile_contig91:31179..32432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig91.15435.1 ID=mRNA_P-fluviatile_contig91.15435.1|Name=mRNA_P-fluviatile_contig91.15435.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1254bp|location=Sequence derived from alignment at P-fluviatile_contig91:31179..32432+ (Porterinema fluviatile SAG_2381)
AGGTCGCGTCACCGGGGCGCTTGGGAAGCGGCGGTAGATGCTGAAATCAA GGGTCTTCAAGACTTGGGAAAGTTTACCGTCTTGGACGACTTGCCGAAAG GCGAAAAGGCCGTCGGGTCGAGGCTGGTATTCGCGTACGAGATCGACAAG GAGGGAAACATAATCAAGCCCAAGACGAGGCTAGTCGCGAAGGGTTACAT GCAGCGCGAGGGCGTGGACTTCTTCCGAACGTCGGCACCCACGCCCGCCG TGGCATGGATGAAGGTGGTCATGGTCGTGGCGAAGGAGATAGGATTTCGT ATGCGCCATTTGGATGTCGCGCAAGCATTCATCAAGGCGCCGCTGGACAC CCGTGTCATCATGAAGTTCTGCGGCAGATGCGGGGAGCTATCCGGCAAGT ACGTGCTCCTCCACAAGGCCCTGTATGGACTGAAGCAGAGCGGTCCCCTG TGCAACGAACTTCTCGTGAACAAGCTGGTCAAGGTGCATGGAATGCATGG GCAATCTCCGTCGCGGACTTCTTGGTCGATCTCTGGCACTTCCTTATCCG GTTTTCGACGACGTCACAGATGTGATTCTCCTTGCCGCGACATTCGAGGA TGATAATGGCTGGCTTTGATGGGCATGCTTTGGGGCGTTCGTGGGAACAG TGAAGACTGACCCCTGTGTTTCGTCTGATTCGGGAGGGCAAGTTGGCACT CATCCTGACCGCACACGTAGATGATATTGCGGTAGGTGGACTGGAAGGTG AAGTCGAGAAGCTACTCGAAGTATTGAAAGAGGGCTTTACAACGAATGAC CTTGGAGAGTTGTCGTTATTCACTGGTTGTGCTTTCGCCCAGGATGAAGA AGGAGGGACTGTCAAAATCAATCAGACTAGTTCGTCCAGACATTAGCTAG GAGGTTTGATGTTACGACCACTTCCTTATACCCTGCATCGCCCACCGCGA ACCTCGAAGCAAGGAGGGAGAATGAACCAGGCGGTGCGTTTGGCCATACA AAGAAGCGGTAGGCTGTTTGATGTGCCTAGTGGTGATGACCAGGCTAGAC ATTGCTAATGCCGTGCGTGCCGAAGGGCGCCACTCGTTGGATCCTACTGA GCGCCACTCGAAGGCTGTAATTCATATCATCCAGTACCTGCTTGGGACGA AAGATCTAGGACTGACGTTTGAACGGGGAACAGGCTTCGAACTGACTTTG TTTACCGACTCTGACGGTGCTGAGAAATCGAATGACAGGAGGTCTGTGTC CGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig91:31179..32432+

>mRNA_P-fluviatile_contig91.15435.1 ID=mRNA_P-fluviatile_contig91.15435.1|Name=mRNA_P-fluviatile_contig91.15435.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=468bp|location=Sequence derived from alignment at P-fluviatile_contig91:31179..32432+ (Porterinema fluviatile SAG_2381)
ATGTGCCTAGTGGTGATGACCAGGCTAGACATTGCTAATGCCGTGCGTGC
CGAAGGGCGCCACTCGTTGGATCCTACTGAGCGCCACTCGAAGGCTGTAA
TTCATATCATCCAGTACCTGCTTGGGACGAAAGATCTAGGACTGACGTTT
GAACGGGGAACAGGCTTCGAACTGACTTTGTTTACCGACTCTGACGGTGC
TGAGAAATCGAATGACAGGAGGTCTGTGTCCGGGATGTGCCTAGTGGTGA
TGACCAGGCTAGACATTGCTAATGCCGTGCGTGCCGAAGGGCGCCACTCG
TTGGATCCTACTGAGCGCCACTCGAAGGCTGTAATTCATATCATCCAGTA
CCTGCTTGGGACGAAAGATCTAGGACTGACGTTTGAACGGGGAACAGGCT
TCGAACTGACTTTGTTTACCGACTCTGACGGTGCTGAGAAATCGAATGAC
AGGAGGTCTGTGTCCGGG
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