mRNA_P-fluviatile_contig90.15432.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig90.15432.1
Unique Name	mRNA_P-fluviatile_contig90.15432.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.790e-37
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            M RR+ Q+VLG E+Q F AEV  SGSSQP PDPQLRPKRDDEPAVD+PVREAIGCLMWTKLTRPDIALPLNKLQK+AHSP
Sbjct:   74 MYRREKQEVLGPEQQTFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSP 153

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.550e-35
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            M RR+ Q+VLG E+QAF AEV  SGS QP PDPQLRPKRDDEPAVD+PVREAIGCLMWTKLTRPDIALPLNKLQK+AHSP
Sbjct:  406 MYRRETQEVLGPEQQAFGAEVDASGSPQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSP 485

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5L002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L002_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.240e-35
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            M RR++Q+VLG+E+QAF  EV  SGSSQP PDPQLRPKRDDEPAVD  VREAIGCLMWTKLTRPDIAL LNKLQ++ HSP
Sbjct:    4 MYRREMQEVLGQEQQAFGVEVDASGSSQPLPDPQLRPKRDDEPAVDTSVREAIGCLMWTKLTRPDIALSLNKLQQITHSP 83

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.780e-34
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 237
            M RR++Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDEPAVD+PVREAIGCLMWTKLTR DIA+P NKLQK+AHS
Sbjct:   57 MYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRLDIAVPRNKLQKIAHS 135

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5KUU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.350e-33
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            M RRK Q+VL  ++QAF AEV  SG SQP PDPQLRP RDDEPAVD+PVREAIGCLMWTKLTRP IALPLNKLQK+AH+P
Sbjct:    4 MYRRKTQEVLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDKPVREAIGCLMWTKLTRPAIALPLNKLQKIAHTP 83

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.500e-33
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 237
            M RR++Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDE AVD+PVREAIGCLMWTKLTRPDIA+P NKLQK+AHS
Sbjct:  219 MYRREIQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLMWTKLTRPDIAVPRNKLQKIAHS 297

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5L5V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.190e-32
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            M R ++Q+VLG E++ F AEV  SG SQ  PDPQLRPK DD+PAVD+PVREAIGCLMWTKLTRPDIALPLNKL+K+AHSP
Sbjct:  175 MYRHEMQEVLGPEQEVFGAEVDASGPSQSLPDPQLRPKIDDQPAVDKPVREAIGCLMWTKLTRPDIALPLNKLEKIAHSP 254

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.800e-31
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1

Query:   28 LGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            LG E+QAF AEV  SGSSQP PDPQLRP RDDEPAV++PVREAIGCLMWTKLTRPDI LPLNKLQ++A+SP
Sbjct:    5 LGPEQQAFGAEVDASGSSQPLPDPQLRPTRDDEPAVEKPVREAIGCLMWTKLTRPDITLPLNKLQEIAYSP 75

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5JLR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.100e-29
Identity = 60/77 (77.92%), Postives = 62/77 (80.52%), Query Frame = 1

Query:   43 QAFEAEVGGSGSSQPQPDPQLRPKRD-----------DEPAVDEPVREAIGCLMWTKLTRPDIALPLNKLQKVAHSP 240
            QAF AEV  SGSSQP PDPQLRPKRD           DEPAVD+PVREAIGCLMWTKLTRPDIALPLNKLQK+AHSP
Sbjct:  115 QAFGAEVDASGSSQPLPDPQLRPKRDMERACADHVLGDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSP 191

[Close]

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Match: A0A6H5JKB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.960e-28
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 1

Query:    1 MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVREAIGCLMWTKLT----------------------------RPDIALPLNKLQKVAHSP 240
            M+RR++Q+VLG E+QAF AEV  S SSQP PDPQLRPKR+DEPAVD+P REAIGCLMWTKLT                            RPDI LPLNKLQK+AHSP
Sbjct:  224 MNRREMQEVLGPEQQAFGAEVDASVSSQPLPDPQLRPKRNDEPAVDKPAREAIGCLMWTKLTXWXXXXXXXXXXXXXXXXXXXXXXXXXTRPDIPLPLNKLQKIAHSP 331

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig90.15432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L519_9PHAE	1.790e-37	83.75	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L5G4_9PHAE	6.550e-35	83.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L002_9PHAE	7.240e-35	78.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KW61_9PHAE	1.780e-34	81.01	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUU2_9PHAE	1.350e-33	78.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LAS2_9PHAE	5.500e-33	81.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5V1_9PHAE	7.190e-32	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFV7_9PHAE	1.800e-31	81.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLR7_9PHAE	5.100e-29	77.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKB8_9PHAE	2.960e-28	59.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig90	contig	P-fluviatile_contig90:123191..123564 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	240
Cds size	240
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817356.1848207-CDS-P-fluviatile_contig90:123190..123324	1622817356.1848207-CDS-P-fluviatile_contig90:123190..123324	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 123191..123324 -
1693572207.283651-CDS-P-fluviatile_contig90:123190..123324	1693572207.283651-CDS-P-fluviatile_contig90:123190..123324	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 123191..123324 -
1622817356.1951344-CDS-P-fluviatile_contig90:123458..123564	1622817356.1951344-CDS-P-fluviatile_contig90:123458..123564	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 123459..123564 -
1693572207.2955637-CDS-P-fluviatile_contig90:123458..123564	1693572207.2955637-CDS-P-fluviatile_contig90:123458..123564	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 123459..123564 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig90.15432.1	prot_P-fluviatile_contig90.15432.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig90 123191..123564 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig90:123191..123564-
coding sequence from alignment at P-fluviatile_contig90:123191..123564-

protein sequence of mRNA_P-fluviatile_contig90.15432.1

>prot_P-fluviatile_contig90.15432.1 ID=prot_P-fluviatile_contig90.15432.1|Name=mRNA_P-fluviatile_contig90.15432.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
MSRRKLQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDEPVR
EAIGCLMWTKLTRPDIALPLNKLQKVAHSP

mRNA from alignment at P-fluviatile_contig90:123191..123564-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig90.15432.1 ID=mRNA_P-fluviatile_contig90.15432.1|Name=mRNA_P-fluviatile_contig90.15432.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=374bp|location=Sequence derived from alignment at P-fluviatile_contig90:123191..123564- (Porterinema fluviatile SAG_2381)
ATGTCCAGGCGCAAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATT
CGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGC
AGCTAAGTGTACCCTCGCCAATCGGGCAGAAACCGTGTGATGTGGAAGCG
TTACCGATGACGTACAAGGATGTGATGTGTTCGAAGTACAAGGTTCTCTG
GGATGCGGCCATCAAGAAAGAGATAGATGGTCAAAACAAGGGCCAAAGAG
AGATGACGAGCCCGCGGTGGATGAACCGGTGAGGGAGGCAATCGGATGCC
TGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAATAAG
CTCCAGAAGGTCGCCCACTCACCC

Coding sequence (CDS) from alignment at P-fluviatile_contig90:123191..123564-

>mRNA_P-fluviatile_contig90.15432.1 ID=mRNA_P-fluviatile_contig90.15432.1|Name=mRNA_P-fluviatile_contig90.15432.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig90:123191..123564- (Porterinema fluviatile SAG_2381)
ATGTCCAGGCGCAAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATT
CGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGC
AGCTAAATGTCCAGGCGCAAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCA
GGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAG
ACCCGCAGCTAAGGCCAAAGAGAGATGACGAGCCCGCGGTGGATGAACCG
GTGAGGGAGGCAATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGA
CATCGCCCTGCCTCTGAATAAGCTCCAGAAGGTCGCCCACTCACCCGGCC
AAAGAGAGATGACGAGCCCGCGGTGGATGAACCGGTGAGGGAGGCAATCG
GATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTG
AATAAGCTCCAGAAGGTCGCCCACTCACCC