mRNA_P-fluviatile_contig12.1509.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.510e-53 Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAA+ TPAKSSS+MKM+FESEIGAQPPLGFWDPLGLLADADQERFERLRYVE+KHGRI+MLA+ GHLT QNVRLPGMLS SANLSFADMPNGVAALSKIP
Sbjct: 22 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIP 124
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 185 bits (469), Expect = 5.430e-52 Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAAL+TPAKSSS+MKM+FESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRI+MLA+ GHLT QN RLPGMLS SANLSFADMPNGVAALSKIP
Sbjct: 15 AFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIP 117
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 183 bits (464), Expect = 4.000e-51 Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAA+ T AKSSS+MKM+FESEIGAQPPLGFWDPLGLLADADQERFERLRYVE+KHGRI+MLA+ GHLT QNVRLPGMLS SA+LSFADMPNGVAALSKIP
Sbjct: 25 AFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIP 127
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 180 bits (457), Expect = 3.750e-50 Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAALTT AK+ S+MKM+FESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRI+MLA+ GHLT QN RLPGMLS SANLSFADMPNGVAALSKIP
Sbjct: 21 AFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIP 123
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 184 bits (468), Expect = 8.040e-50 Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAA+ TPAKSSS+MKM+FESEIGAQPPLGFWDPLGLL DADQERFERLRYVE+KHGRI+MLA+ GHLT QN RLPGMLS SANLSFADMPNGVAALSKIP
Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIP 283
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 174 bits (440), Expect = 1.110e-47 Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 2
Query: 2 AFNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
AFNGAALTT AKSSS+MKM+FESEIGAQ PLGFWDPLGLL DADQ+ FERLRYVE+K GRI+MLA+ GHLT QN RLPGMLS SANLSFADMPNGVAALSKIP
Sbjct: 20 AFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIP 122
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 171 bits (434), Expect = 2.940e-47 Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 1
Query: 307 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 591
PP GLAQI F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct: 88 PPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 172 bits (435), Expect = 5.280e-47 Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 2
Query: 5 FNGAALTTPAKSSSSMKMAFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEIKHGRISMLAVLGHLTAQNVRLPGMLSTSANLSFADMPNGVAALSKIP 310
FNGAAL T AKSSS+MKM+FESEIGAQPP+GFWDPLGL+ADADQERF+RLRYVEIKHGRI+MLAV+GH+T QN RLPGMLS NL+FAD PNGVAA SKIP
Sbjct: 17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIP 118
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 169 bits (427), Expect = 3.000e-46 Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 1
Query: 307 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 591
PP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA Y FN
Sbjct: 87 PPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI) HSP 1 Score: 163 bits (413), Expect = 3.140e-45 Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 307 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 591
PPLGLAQIVAF+GFLEL VMKNVEGSFPGD T GGNPF + WD MSEET+ SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct: 12 PPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1509.1 >prot_P-fluviatile_contig12.1509.1 ID=prot_P-fluviatile_contig12.1509.1|Name=mRNA_P-fluviatile_contig12.1509.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=198bp RVQRRRPDHPREVVVFDEDGLRVRDRRAAPPRVLGPARPPCRRGPGAVRAback to top mRNA from alignment at P-fluviatile_contig12:2464809..2466394+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1509.1 ID=mRNA_P-fluviatile_contig12.1509.1|Name=mRNA_P-fluviatile_contig12.1509.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1586bp|location=Sequence derived from alignment at P-fluviatile_contig12:2464809..2466394+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:2464809..2466394+ >mRNA_P-fluviatile_contig12.1509.1 ID=mRNA_P-fluviatile_contig12.1509.1|Name=mRNA_P-fluviatile_contig12.1509.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1188bp|location=Sequence derived from alignment at P-fluviatile_contig12:2464809..2466394+ (Porterinema fluviatile SAG_2381)back to top |