prot_P-fluviatile_contig12.1509.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig12.1509.1
Unique Name	prot_P-fluviatile_contig12.1509.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	198

Homology

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.730e-54
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI AFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHE+L+N+PYIINDL+GASYTFN
Sbjct:  124 PPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.880e-52
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI AFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA YTFN
Sbjct:  127 PPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 172 bits (435), Expect = 3.720e-51
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI  F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:   88 PPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 172 bits (437), Expect = 5.410e-51
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPF +SWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDLVGASYTFN
Sbjct:  123 PPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.140e-50
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA Y FN
Sbjct:   87 PPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.070e-49
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PPLGLAQIVAF+GFLEL VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct:  112 PPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.210e-49
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PPLGLAQIVAF+GFLEL VMKNVEGSFPGD T GGNPF + WD MSEET+ SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct:   12 PPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 167 bits (423), Expect = 6.850e-49
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI  F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:  122 PPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 167 bits (422), Expect = 8.350e-49
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI  F+GFLELAVMKNVEGSFPGDF  GGNPFASSWD+MS ETQ SKRAIELNNGRAAQMGIL MMVHE+LSNQPYI NDL+GASYTFN
Sbjct:  117 PPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.600e-48
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0

Query:  103 PPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN 197
            PP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA YTFN
Sbjct:  283 PPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig12.1509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	3.730e-54	92.63	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	1.880e-52	89.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPD_MACPY	3.720e-51	87.37	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPB_MACPY	5.410e-51	87.37	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JDS8_9PHAE	4.140e-50	85.26	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KBS3_9PHAE	5.070e-49	85.26	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LJH9_ECTSI	5.210e-49	83.16	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	6.850e-49	85.26	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPF_MACPY	8.350e-49	86.32	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
D8LNK6_ECTSI	1.600e-48	86.32	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 102..177 e-value: 6.5E-12 score: 46.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 86..193 e-value: 9.8E-6 score: 27.5
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 102..181
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 102..181
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 102..187

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig12	contig	P-fluviatile_contig12:2464809..2465402 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig12.1509.1	mRNA_P-fluviatile_contig12.1509.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig12 2464809..2466394 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig12.1509.1 ID=prot_P-fluviatile_contig12.1509.1|Name=mRNA_P-fluviatile_contig12.1509.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=198bp
RVQRRRPDHPREVVVFDEDGLRVRDRRAAPPRVLGPARPPCRRGPGAVRA
PPVRGDQARPHLHARRPGPPDRAERPPPRHAVDLRQPVVRRHAQRRGRAL
EDPPLGLAQIVAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEE
TQESKRAIELNNGRAAQMGILAMMVHEKLSNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln