mRNA_P-fluviatile_contig12.1492.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1492.1
Unique NamemRNA_P-fluviatile_contig12.1492.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.340e-71
Identity = 187/217 (86.18%), Postives = 191/217 (88.02%), Query Frame = 1 
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLKVVRELVYWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSK+SGSVERAVATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHHSVYH HLAVS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPLLSAYGSLPL  AVYNGHLKVV ELV+WYGTDRCT+DGG LALATAASRKHVDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
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BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.530e-66
Identity = 199/217 (91.71%), Postives = 207/217 (95.39%), Query Frame = 1 
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLKVVRELVYWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSK+SGS +  +ATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NPLLSAYGSLPL MAVY+GHL+VVRELV+WYGTDRCTSDGGALALATAASRKHVDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
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BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.890e-57
Identity = 192/218 (88.07%), Postives = 196/218 (89.91%), Query Frame = 1 
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLY-MAVYNGHLKVVRELVYWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSK+SGS +  +ATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSAYGSLPLY M          RELVYWYG DRCTSDGGALAL TAASRKHVDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
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BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.810e-48
Identity = 149/209 (71.29%), Postives = 152/209 (72.73%), Query Frame = 1 
Query:   25 SGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLKVVRELVYWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            SGSVER +ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHH+VYH HLAVSK                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA                   ELVYWYGTD CTSDGGALALATAASR  VDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
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BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.990e-36
Identity = 90/179 (50.28%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLKVVREL 537
            MPSTLSK+SGS++  +ATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHHSVYHNHLAVSK                                                                         NPLLSA GSLPLYMAVYN  L   R L
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLLRANA------NPLLSACGSLPLYMAVYNRPLVRNRSL 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JHQ8_9PHAE2.340e-7186.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE2.530e-6691.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE2.890e-5788.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE2.810e-4871.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI1.990e-3650.28EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2310854..2311504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue7.4e-30
Seed eggNOG ortholog2880.D8LH66
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.6664116-CDS-P-fluviatile_contig12:2310853..23115041622815518.6664116-CDS-P-fluviatile_contig12:2310853..2311504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2310854..2311504 -
1693562118.5802937-CDS-P-fluviatile_contig12:2310853..23115041693562118.5802937-CDS-P-fluviatile_contig12:2310853..2311504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2310854..2311504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1492.1prot_P-fluviatile_contig12.1492.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2310854..2311504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1492.1

>prot_P-fluviatile_contig12.1492.1 ID=prot_P-fluviatile_contig12.1492.1|Name=mRNA_P-fluviatile_contig12.1492.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=217bp
MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLR
QGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGTDTPLH
VAATKGFCQGMVVLIDAGANVDSRLDDGATPLFEVAKDGRLEGVKILLRA
NANPLLSAYGSLPLYMAVYNGHLKVVRELVYWYGTDRCTSDGGALALATA
ASRKHVDIVTFLCDAGV
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mRNA from alignment at P-fluviatile_contig12:2310854..2311504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1492.1 ID=mRNA_P-fluviatile_contig12.1492.1|Name=mRNA_P-fluviatile_contig12.1492.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig12:2310854..2311504- (Porterinema fluviatile SAG_2381)
ATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTGCGGTTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTGATCGAGG
GGGGAGCGGACCTTGAAGCGAGGCATGGTGGCACAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACGC
AGGCGCCAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG
AAGTGGCGAAGGACGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCAGCGTACGGAAGTCTCCCGTTATATATGGC
GGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTTGTGTATTGGTACG
GAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2310854..2311504-

>mRNA_P-fluviatile_contig12.1492.1 ID=mRNA_P-fluviatile_contig12.1492.1|Name=mRNA_P-fluviatile_contig12.1492.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1302bp|location=Sequence derived from alignment at P-fluviatile_contig12:2310854..2311504- (Porterinema fluviatile SAG_2381)
ATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTGCGGTTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTGATCGAGG
GGGGAGCGGACCTTGAAGCGAGGCATGGTGGCACAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACGC
AGGCGCCAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG
AAGTGGCGAAGGACGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCAGCGTACGGAAGTCTCCCGTTATATATGGC
GGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTTGTGTATTGGTACG
GAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
GATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTGCGGTTG
CTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTG
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGACCTTCTGCG
GCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGC
ACCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTGATCGAG
GGGGGAGCGGACCTTGAAGCGAGGCATGGTGGCACAGATACACCACTTCA
CGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACG
CAGGCGCCAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTC
GAAGTGGCGAAGGACGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGC
GAACGCGAATCCGCTCTTGTCAGCGTACGGAAGTCTCCCGTTATATATGG
CGGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTTGTGTATTGGTAC
GGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGC
CGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTG
TG
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