mRNA_P-fluviatile_contig9.15250.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15250.1
Unique NamemRNA_P-fluviatile_contig9.15250.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15250.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.300e-24
Identity = 74/127 (58.27%), Postives = 80/127 (62.99%), Query Frame = 2 
Query:  476 SPKGSLAAFVTCSISTLLLISSCCQPFRDESRCHRAFDDGSGAGGETSSSSIFGAFCACT--GRSCSSSGGGHQRIPSLWAWFALLGGVSGAVGELVPLGVDDNLSMPIVSGGMFLALARC-TVGGP 847
            S  GSLAAF+ CS+STLLL   CC+P  DE R      D      +  SS IFG F ACT  GR    SGG       L  WFALLGGVSGAVGEL+PLGVDDNLSMPIVSG  FLAL +C T  GP
Sbjct:  168 SLAGSLAAFLACSLSTLLLFGCCCRPPGDEGRDSDHVGDS-----DLLSSLIFGHFSACTAVGRGGRDSGGSGTP---LLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLALRKCSTFDGP 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8G9_ECTSI1.300e-2458.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:2259461..2260875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog2880.D7G8G9
Preferred nameDGK1
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
EC2.7.1.174
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size1415
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15250.1prot_P-fluviatile_contig9.15250.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 2259840..2260334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.4071307-UTR-P-fluviatile_contig9:2259460..22598391622817336.4071307-UTR-P-fluviatile_contig9:2259460..2259839Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2259461..2259839 +
1693572125.3955183-UTR-P-fluviatile_contig9:2259460..22598391693572125.3955183-UTR-P-fluviatile_contig9:2259460..2259839Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2259461..2259839 +
1622817336.437596-UTR-P-fluviatile_contig9:2260334..22608751622817336.437596-UTR-P-fluviatile_contig9:2260334..2260875Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2260335..2260875 +
1693572125.4293628-UTR-P-fluviatile_contig9:2260334..22608751693572125.4293628-UTR-P-fluviatile_contig9:2260334..2260875Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2260335..2260875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.4234748-CDS-P-fluviatile_contig9:2259839..22603341622817336.4234748-CDS-P-fluviatile_contig9:2259839..2260334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2259840..2260334 +
1693572125.414927-CDS-P-fluviatile_contig9:2259839..22603341693572125.414927-CDS-P-fluviatile_contig9:2259839..2260334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2259840..2260334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15250.1

>prot_P-fluviatile_contig9.15250.1 ID=prot_P-fluviatile_contig9.15250.1|Name=mRNA_P-fluviatile_contig9.15250.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=165bp
MTSAHYRRFSPKYLTVCTVLMFPSSTVADSLTSPKGSLAAFVTCSISTLL
LISSCCQPFRDESRCHRAFDDGSGAGGETSSSSIFGAFCACTGRSCSSSG
GGHQRIPSLWAWFALLGGVSGAVGELVPLGVDDNLSMPIVSGGMFLALAR
CTVGGPSSWPWSWS*
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mRNA from alignment at P-fluviatile_contig9:2259461..2260875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15250.1 ID=mRNA_P-fluviatile_contig9.15250.1|Name=mRNA_P-fluviatile_contig9.15250.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1415bp|location=Sequence derived from alignment at P-fluviatile_contig9:2259461..2260875+ (Porterinema fluviatile SAG_2381)
CTCGGCGTTGTTTCCATTTCTTCCCATCTGTCTTGCAATGGCGCCCGCGC
CGGCTTCTGCGCGTGTTCGACTGCGGAAGAGAAATGAAATGCGTCTCGCG
TTTGCCCCGCGCGACCGGTGTGAACCTACGTTGAGGCCAATTTTGCGACC
GCGGACTGACTCAATGTCCGTACCTGCTGTTGGCGATGGGCTGAACGTTC
TGTTGGAGCCAAGCAAGATGACAAAGACGTGTATTCGATGCCAGCTATTG
ACGTTCGGCCGCGGTTAACGTGCGCAACGCCGCCGAGGATACCCAATTCG
TACTAGCTTCCCGAGATGACCCATCTCATCTTGGAATGCTTTGTGTGGTC
TGTCGACTCCGTCCTTTTTACCATCTTGGATGACAAGCGCCCACTACCGC
CGTTTCTCCCCAAAGTATCTCACCGTTTGCACCGTCTTGATGTTCCCATC
TTCGACCGTTGCCGACTCTCTCACCTCCCCCAAGGGCTCGCTGGCAGCGT
TCGTTACGTGTTCAATATCGACGCTGCTTCTAATTAGCAGCTGTTGCCAG
CCTTTTCGCGACGAGAGCAGATGTCACCGCGCCTTCGACGACGGCAGCGG
TGCTGGTGGCGAAACAAGCAGTAGCTCAATTTTCGGCGCCTTCTGCGCTT
GCACCGGCAGAAGCTGCAGCAGCAGCGGCGGTGGTCATCAAAGAATACCC
TCTCTGTGGGCGTGGTTCGCGCTGTTGGGCGGCGTGAGCGGGGCGGTGGG
GGAGTTGGTCCCGCTCGGGGTAGATGACAACCTCTCGATGCCGATTGTGT
CGGGCGGGATGTTCTTGGCATTGGCAAGGTGCACCGTAGGAGGACCTTCG
TCGTGGCCTTGGTCGTGGTCTTGACCTTGATCTCGGTCTTCTCCGTGGTC
TTTACCTTGTTCTTGGTGTTTACGTTTTTACATTGACCTTCATCGTTGGT
CTCGTGAGGGGCATGCGCGCGTGGTCAAGTGAAGGGTAAAATCGCCGCAC
GTAGTTTGCATTGGCGCAGGGGCGATTGGACGCGGATGTACGCTAGAAGA
TGTGTAGTTTTTGCCGCGGTACATATCGCAACGTCCAGGCGTTGGCAGAA
GGGCGGAGATCAGAGCGGGGAAAGCATTGTGCGTTTTGGGGATTCACCTG
ATTTCGATGGGGACATTGTCTCGCCGCCGAATCTGCCTGCAACAGCCAGA
ACGGGTGTTTAACATCCTGCCGGCCGTTGGTGTGCTGTAAAAAAAATAGC
GAAGCGTCCGATACTACTTGAGGACGAAGGCAGCGGCATCGCACGCCTCT
CCGGTCTTTTTTGGTCGAGCAATGACCTCGTTAACTCCCTCGGGTTGCCG
ACGGCATGATGCACAGACCCCTCGTAAGATTGGGTAAAGGTAGCACATCA
ATTCGAATGGCCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:2259461..2260875+

>mRNA_P-fluviatile_contig9.15250.1 ID=mRNA_P-fluviatile_contig9.15250.1|Name=mRNA_P-fluviatile_contig9.15250.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=990bp|location=Sequence derived from alignment at P-fluviatile_contig9:2259461..2260875+ (Porterinema fluviatile SAG_2381)
ATGACAAGCGCCCACTACCGCCGTTTCTCCCCAAAGTATCTCACCGTTTG
CACCGTCTTGATGTTCCCATCTTCGACCGTTGCCGACTCTCTCACCTCCC
CCAAGGGCTCGCTGGCAGCGTTCGTTACGTGTTCAATATCGACGCTGCTT
CTAATTAGCAGCTGTTGCCAGCCTTTTCGCGACGAGAGCAGATGTCACCG
CGCCTTCGACGACGGCAGCGGTGCTGGTGGCGAAACAAGCAGTAGCTCAA
TTTTCGGCGCCTTCTGCGCTTGCACCGGCAGAAGCTGCAGCAGCAGCGGC
GGTGGTCATCAAAGAATACCCTCTCTGTGGGCGTGGTTCGCGCTGTTGGG
CGGCGTGAGCGGGGCGGTGGGGGAGTTGGTCCCGCTCGGGGTAGATGACA
ACCTCTCGATGCCGATTGTGTCGGGCGGGATGTTCTTGGCATTGGCAAGG
TGCACCGTAGGAGGACCTTCGTCGTGGCCTTGGTCGTGGTCTTGAATGAC
AAGCGCCCACTACCGCCGTTTCTCCCCAAAGTATCTCACCGTTTGCACCG
TCTTGATGTTCCCATCTTCGACCGTTGCCGACTCTCTCACCTCCCCCAAG
GGCTCGCTGGCAGCGTTCGTTACGTGTTCAATATCGACGCTGCTTCTAAT
TAGCAGCTGTTGCCAGCCTTTTCGCGACGAGAGCAGATGTCACCGCGCCT
TCGACGACGGCAGCGGTGCTGGTGGCGAAACAAGCAGTAGCTCAATTTTC
GGCGCCTTCTGCGCTTGCACCGGCAGAAGCTGCAGCAGCAGCGGCGGTGG
TCATCAAAGAATACCCTCTCTGTGGGCGTGGTTCGCGCTGTTGGGCGGCG
TGAGCGGGGCGGTGGGGGAGTTGGTCCCGCTCGGGGTAGATGACAACCTC
TCGATGCCGATTGTGTCGGGCGGGATGTTCTTGGCATTGGCAAGGTGCAC
CGTAGGAGGACCTTCGTCGTGGCCTTGGTCGTGGTCTTGA
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