mRNA_P-fluviatile_contig12.1481.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1481.1
Unique NamemRNA_P-fluviatile_contig12.1481.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.690e-25
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 2 
Query:  116 DESXXXXQDSDSRSERRREDA----DEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRR 502
            D S    +D DS  E  RE A    DE  ++D DD +  D     + IP+G+ +    PAAL ++L+++ +L+RLG+GW+ G+ITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y  D DA V SW LL R
Sbjct:   76 DHSGEGVEDGDSSDEDTRETASGQMDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMY-RDPDAVVDSWILLER 208
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.340e-24
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRR 502
            DE + +D DD +  D+    + IP+G+ +    PAAL   L+++ +L+RLG+GW  G+ITRQ+Q RTRH YD+RV LD D STR MKL L+ Y  D DA VGSW LL R
Sbjct:    2 DELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLER 110
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.720e-23
Identity = 65/146 (44.52%), Postives = 87/146 (59.59%), Query Frame = 2 
Query:   83 LFSQPPGSSDEDESXXXXQDSDSRSERRREDADEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRRREDFV 517
            L  Q  G S+ +E      +SD   E++ ED      L  DD L   E  L + IP+G+ L   PP+AL  +LVK+ +L++LG+GW  GVI+R+A   +R  YD+RV L  DGSTRSMKLPL+ Y  D DA VGSW LL   ++ V
Sbjct: 1830 LGLQLGGDSESEEDASSCDESDGDDEKQSEDP--LTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEEV 1973
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.290e-22
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 2 
Query:  215 ADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRR 502
            +DDE+   + IP+G+ +    PAAL  +L+++ +L+RLG+GW  GVITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y  D DA VGSW LL R
Sbjct:  545 SDDEIRA-MEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLER 640
[Close]
BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.160e-22
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 2 
Query:  188 AILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRR 502
            +++D DD +  D+    + IP+G+ +    PAA+ ++L+++ +L+RLG+GW  GVITR++Q RTRH YD+RV LD D ST SMKLPL+ Y    DA VGSW LL R
Sbjct:  250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILLGR 355
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5L1Y1_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.150e-19
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVPLP----IRIPEGYTLC-MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALL 496
            DE A+LD DDD  D + P      +  P G+ +  + P AL   L+++ +L+RLG+GW RG+I +Q+Q  TRH YD+ V L+ D STR MKLPLD+Y  D DA VGSW LL
Sbjct:  929 DELALLDDDDDRMDPQDPEDETQGMESPTGFRIQEVKPVALDRLLLRRGVLVRLGMGWFRGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLPLDKYTGDLDAAVGSWVLL 1039
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5JR18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR18_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-17
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVP---LPIRIPEGYTLC-MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALL 496
            DE A+LD DD +  D+       + IP G+ L    PAAL   L+++ + +RLG+GW+ G+I +Q+  R  H YD+ V L+ D STR+MKLPLD+Y  D DA VGSW LL
Sbjct:   24 DELALLDEDDSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVFVRLGMGWIGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDKYSGDPDAAVGSWVLL 131
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BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.030e-17
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2 
Query:  188 AILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLD 448
            +++D DD +  D+  L + IP+G+ +    PAAL ++  ++ +L+RLG+GW   VITRQ+Q RTRH YD+RV LD D STRSMKLPL+
Sbjct:  127 SLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLE 214
[Close]
BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.610e-16
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  314 LLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCADNDAEVGSWALLRR 502
            L+RLG+G   GVITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y  D DA VGSW LL R
Sbjct:  619 LVRLGMGCFGGVITRQSQKRTRHLYDYRVHLDLDQSTRSMKLPLEMYRGDPDAVVGSWILLER 681
[Close]
BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.880e-15
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:  245 IPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDG-DGSTRSMKLPLDQYCADNDAEVGSWALL 496
            IP+G+ L   PP  L  ++VK+ +L++LG+ W  GVI+R++   +R  YD+RV L   D STRSMK+PL+    D DA +G+W LL
Sbjct:    3 IPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLL 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K2B3_9PHAE7.690e-2548.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE2.340e-2450.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.720e-2344.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXN2_9PHAE1.290e-2256.70C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L5J8_9PHAE4.160e-2249.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Y1_9PHAE3.150e-1948.65HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JR18_9PHAE1.120e-1746.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE3.030e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXH0_9PHAE6.610e-1668.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAW0_9PHAE2.880e-1545.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2226410..2226938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size531
Cds size261
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.322421-UTR-P-fluviatile_contig12:2226409..22266771622815518.322421-UTR-P-fluviatile_contig12:2226409..2226677Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2226410..2226677 +
1693562118.416536-UTR-P-fluviatile_contig12:2226409..22266771693562118.416536-UTR-P-fluviatile_contig12:2226409..2226677Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2226410..2226677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.3350124-CDS-P-fluviatile_contig12:2226677..22269381622815518.3350124-CDS-P-fluviatile_contig12:2226677..2226938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2226678..2226938 +
1693562118.4254792-CDS-P-fluviatile_contig12:2226677..22269381693562118.4254792-CDS-P-fluviatile_contig12:2226677..2226938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2226678..2226938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1481.1prot_P-fluviatile_contig12.1481.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2226678..2226938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1481.1

>prot_P-fluviatile_contig12.1481.1 ID=prot_P-fluviatile_contig12.1481.1|Name=mRNA_P-fluviatile_contig12.1481.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDG
STRSMKLPLDQYCADNDAEVGSWALLRRREDFVESSD
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mRNA from alignment at P-fluviatile_contig12:2226410..2226938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1481.1 ID=mRNA_P-fluviatile_contig12.1481.1|Name=mRNA_P-fluviatile_contig12.1481.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=529bp|location=Sequence derived from alignment at P-fluviatile_contig12:2226410..2226938+ (Porterinema fluviatile SAG_2381)
ACGTACTTGATTCGAAAACATGAGAATAAATAGATAACAGGCAGGAATTT
TGAATTGGCAGTTTCAGGGGTCACCGCGGTAATTGTTTTCCCAGCCCCCG
GGTTCAAGTGACGAGGACGAGAGCGATGACGACTTCCAAGATTCGGATAG
TCGGAGCGAGAGGCGACGTGAGGACGCCGATGAGGGTGCCATCTTGGATA
TCGACGATGATCTTGCCGATGACGAGGTTCCCCTGCCAATTCGGATCCCC
GAAGGATATACCCTGTGCATGCCGCCTGCAGCTCTCACCGCAGCCTTGGT
GAAGCAACCGATACTGCTGCGGCTTGGTGTGGGCTGGGTGCGCGGAGTCA
TCACGCGACAGGCTCAAGCCCGCACGCGCCACCGCTACGACTTCAGGGTT
TTTCTCGACGGTGATGGCAGTACGCGCAGCATGAAACTGCCGTTGGACCA
ATACTGTGCGGACAACGACGCGGAAGTGGGGTCTTGGGCGCTGCTCCGTC
GTCGTGAGGATTTCGTCGAAAGTAGTGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2226410..2226938+

>mRNA_P-fluviatile_contig12.1481.1 ID=mRNA_P-fluviatile_contig12.1481.1|Name=mRNA_P-fluviatile_contig12.1481.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig12:2226410..2226938+ (Porterinema fluviatile SAG_2381)
ATGCCGCCTGCAGCTCTCACCGCAGCCTTGGTGAAGCAACCGATACTGCT
GCGGCTTGGTGTGGGCTGGGTGCGCGGAGTCATCACGCGACAGGCTCAAG
CCCGCACGCGCCACCGCTACGACTTCAGGGTTTTTCTCGACGGTGATGGC
AGTACGCGCAGCATGAAACTGCCGTTGGACCAATACTGTGCGGACAACGA
CGCGGAAGTGGGGTCTTGGGCGCTGCTCCGTCGTCGTGAGGATTTCGTCG
AAAGTAGTGATATGCCGCCTGCAGCTCTCACCGCAGCCTTGGTGAAGCAA
CCGATACTGCTGCGGCTTGGTGTGGGCTGGGTGCGCGGAGTCATCACGCG
ACAGGCTCAAGCCCGCACGCGCCACCGCTACGACTTCAGGGTTTTTCTCG
ACGGTGATGGCAGTACGCGCAGCATGAAACTGCCGTTGGACCAATACTGT
GCGGACAACGACGCGGAAGTGGGGTCTTGGGCGCTGCTCCGTCGTCGTGA
GGATTTCGTCGAAAGTAGTGAT
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