mRNA_P-fluviatile_contig9.15166.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15166.1
Unique NamemRNA_P-fluviatile_contig9.15166.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15166.1 vs. uniprot
Match: A0A7R9YA16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.100e-8
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 MSELQTNRAILAALKGLQEKVQNLENERQHAIQEVQTLREELAGRQEDFKHTQALQHLTIDRDSAASRLSYEQLLADKRVVDSHVDETE 267
            MS+   +RA+L+AL+ LQ+K++ LE ER  A+ EV  L+++L   +   K ++ L+ LT      ASRL+ E++ A+K+VV+  + + E
Sbjct:  222 MSDSSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEMRLSKAE 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9YA16_9STRA7.100e-837.08Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:1545184..1545790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.6074257-CDS-P-fluviatile_contig9:1545183..15452581622817324.6074257-CDS-P-fluviatile_contig9:1545183..1545258Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1545184..1545258 +
1693572063.606287-CDS-P-fluviatile_contig9:1545183..15452581693572063.606287-CDS-P-fluviatile_contig9:1545183..1545258Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1545184..1545258 +
1622817324.6176865-CDS-P-fluviatile_contig9:1545595..15457901622817324.6176865-CDS-P-fluviatile_contig9:1545595..1545790Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1545596..1545790 +
1693572063.616055-CDS-P-fluviatile_contig9:1545595..15457901693572063.616055-CDS-P-fluviatile_contig9:1545595..1545790Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1545596..1545790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15166.1prot_P-fluviatile_contig9.15166.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 1545184..1545790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15166.1

>prot_P-fluviatile_contig9.15166.1 ID=prot_P-fluviatile_contig9.15166.1|Name=mRNA_P-fluviatile_contig9.15166.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=90bp
MSELQTNRAILAALKGLQEKVQNLENERQHAIQEVQTLREELAGRQEDFK
HTQALQHLTIDRDSAASRLSYEQLLADKRVVDSHVDETEA
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mRNA from alignment at P-fluviatile_contig9:1545184..1545790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15166.1 ID=mRNA_P-fluviatile_contig9.15166.1|Name=mRNA_P-fluviatile_contig9.15166.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=607bp|location=Sequence derived from alignment at P-fluviatile_contig9:1545184..1545790+ (Porterinema fluviatile SAG_2381)
ATGAGTGAGCTTCAAACCAACAGGGCCATTCTCGCAGCACTGAAGGGGCT
GCAGGAAAAGGTTCAAAATCTCGAGGTGATCGGATTGGGACGGGTTGATG
TCCATCCCATTCGACTTCGAAAATTGACCAAGCAGACGGATCCAGCCGCG
AAATGAAGATACCGCATTTGGATTAATGCGCAATATTGATAAGTGCACAT
TTGTAGATGCCGTCACACAACTAGAGCACGAACTGTTGCGAGGGGCGGGA
ATACGGTGCCCAATCCTGAGCTGTGGACTGCGCCCGGGATTCGCTATGAG
CTGGGACGTGCGAGGGACCAGACCGTGTACGTGAGGTCGATACTTTTTTA
CCACCATGCGGTGATGTGCTGCACTCACTCAATCTACCGTCACTCCTTAA
TGCGTATCATAGAACGAGCGCCAGCACGCGATTCAAGAGGTGCAGACGCT
AAGAGAAGAGCTGGCCGGACGCCAAGAAGACTTTAAGCACACGCAGGCGC
TGCAGCACCTCACCATCGATAGAGATAGTGCGGCATCTCGTCTGTCCTAC
GAACAACTTCTCGCTGACAAGCGAGTTGTGGACAGCCACGTAGACGAGAC
TGAGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:1545184..1545790+

>mRNA_P-fluviatile_contig9.15166.1 ID=mRNA_P-fluviatile_contig9.15166.1|Name=mRNA_P-fluviatile_contig9.15166.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig9:1545184..1545790+ (Porterinema fluviatile SAG_2381)
ATGAGTGAGCTTCAAACCAACAGGGCCATTCTCGCAGCACTGAAGGGGCT
GCAGGAAAAGGTTCAAAATCTCGAGATGAGTGAGCTTCAAACCAACAGGG
CCATTCTCGCAGCACTGAAGGGGCTGCAGGAAAAGGTTCAAAATCTCGAG
AACGAGCGCCAGCACGCGATTCAAGAGGTGCAGACGCTAAGAGAAGAGCT
GGCCGGACGCCAAGAAGACTTTAAGCACACGCAGGCGCTGCAGCACCTCA
CCATCGATAGAGATAGTGCGGCATCTCGTCTGTCCTACGAACAACTTCTC
GCTGACAAGCGAGTTGTGGACAGCCACGTAGACGAGACTGAGGCGAACGA
GCGCCAGCACGCGATTCAAGAGGTGCAGACGCTAAGAGAAGAGCTGGCCG
GACGCCAAGAAGACTTTAAGCACACGCAGGCGCTGCAGCACCTCACCATC
GATAGAGATAGTGCGGCATCTCGTCTGTCCTACGAACAACTTCTCGCTGA
CAAGCGAGTTGTGGACAGCCACGTAGACGAGACTGAGGCG
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