mRNA_P-fluviatile_contig9.15080.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15080.1
Unique NamemRNA_P-fluviatile_contig9.15080.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig9.15080.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 514 bits (1325), Expect = 8.760e-170
Identity = 297/463 (64.15%), Postives = 343/463 (74.08%), Query Frame = 1 
Query:  604 FAKPKVYTDVDPRTGLQKLPPDKLDTAKKQTEYITPSEMIAKEESGLRPAAVMVAALRQPEKP----WFTSNVVDHRNAWCCLRDAGERAGMRRVLKERPWGNPEDPQGGAQEATSSDVLELMSSAAQHYLKDLLNELKVVAWQRKGGLSADLLAGLESRLQDPRVESAKTELRRGLVPKLPAVADLPRSSLQRDEEAHRRECEEREERWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMDTRAKSGWLSREQLAASEFARRVAIKHGIGVVAALMKRKEMASKEVTEAAAXXXXXXXXXXXDGNADDPMDVSDRPATGGSGXXXXXXXXXXXXXXXXXXSAEGGLKRPLDPLADGNNPLETVRSIRRRLELDGGDVRSADGVEGSSGGAEANGSAAVGFTSGDGSVAKAGEDGPRHEINNADLAELMRSTKPRGDPRKWARILSRAQNSREGTHA 1980
            + KPKVY DVDPRTGLQKLP DKLD+AKKQ E+I  S+++A+EE+ LR      + L  PEKP    WF +NVVDHR+AWCCLRDAGE+AGMRRVLKERPWGNP +P  G +EA  SDVL+LMS AAQ+YLK++L+EL VVA+QRKGGLSA+LL+G+ESRL+DP V+  K ELR+ LVP+LP+V +LPR  L++ EEAHR+ECEEREERWD ELADTL TAEEVRKRLIRRGTKKLPPGSFKWWEDM+TRAKSGWLS+EQLA SEFARRVA+KHGIGVVAALMK+KE+AS        XXXXXXXXXXX    DDPMDVSDR  TG S                      G LKRPLDPLA  ++ +ETVR+IRRRL L   D    D   GS                G+GS   + E     EINNADLAEL+RSTKPRGDPRKWAR+L RAQNSR+G HA
Sbjct:  378 YTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTP---SPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXXDDPMDVSDRAITGDSSSGGRSSKDSKGKAGNKRAPGTG-LKRPLDPLAS-DDAVETVRNIRRRLVLGAPDHGDDDDDIGS----------------GEGSTPPSEEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
[Close]
BLAST of mRNA_P-fluviatile_contig9.15080.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 499 bits (1286), Expect = 1.540e-166
Identity = 299/469 (63.75%), Postives = 340/469 (72.49%), Query Frame = 1 
Query:  604 FAKPKVYTDVDPRTGLQKLPPDKLDTAKKQTEYITPSEMIAKEESGLRPAAVMVAALRQPEKP----WFTSNVVDHRNAWCCLRDAGERAGMRRVLKERPWGNPEDPQGGAQEATSSDVLELMSSAAQHYLKDLLNELKVVAWQRKGGLSADLLAGLESRLQDPRVESAKTELRRGLVPKLPAVADLPRSSLQRDEEAHRRECEEREERWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMDTRAKSGWLSREQLAASEFARRVAIKHGIGVVAALMKRKEMASKEVTEAAAXXXXXXXXXXXDGN---ADDPMDVSDRPATGGSGXXXXXXXXXXXXXXXXXXSAEGGLKRPLDPLADGNNPLETVRSIRRRLEL---DGGDVRSADGVEGSSGGAEANGSAAVGFTSGDGSVAKAGEDGPRHEINNADLAELMRSTKPRGDPRKWARILSRAQNSREGTHA 1980
            + KPKVY DVDPRTGLQKLP DKLD+AKKQ E+I  S+++A+EE+ LR      + L  PEKP    WF +NVVDHR+AWCCLRDAGERAGMRRVLKERPWGNP +P  G +EA  SDVL+LMS AAQ+YLK++L+EL VVA+QRKGGLSA+LL+G+ESRL+DP V+  K ELR+ LVP+LP V DLPR +L+R EEAHR+ECEEREERWD ELADTL TAEEVRKRLIRRGTKKLPPGSFKWWEDM+TRAKSGWLS+EQLA SEFARRVA+KHGIGVVAALM               XXXXXXXXXXX      ADDPMDVSDRP TG S  XXXX                 GLKRPLDPLA  ++ +ETVR+IRRRL L   D GD                          G G+   + E     EINNADLAEL+RSTKPRGDPRKWAR+L RAQNSR+G HA
Sbjct:  177 YTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTP---SPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVSDRPTTGDSSSXXXXSKDSNGKAGNKRTPG-AGLKRPLDPLAS-DDAVETVRNIRRRLVLGAPDDGDXXXXXXX----------------XXRGVGATPPSEEQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
[Close]
BLAST of mRNA_P-fluviatile_contig9.15080.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.270e-46
Identity = 132/343 (38.48%), Postives = 170/343 (49.56%), Query Frame = 1 
Query:  640 RTGLQKLPPDKLDTAKKQTEYITPSEMIAKEESGLRPAAV-------------------------------------MVAALRQPEK-PWFTSNVVDHRNAWCCLRDAGERAGMRRVLKERPWGNPEDPQGGAQEATSSDVLELMSSAAQHYLKDLLNELKVVAWQRKGGLSADLLAGLESRLQDPRVESAKTELRRGLVPKL---------------------PAVADLPRSSLQRDEEAHRRECEEREERWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMDTRAKSGWLSREQLAASEFARRVAIKHGIGV---VAALMKRKEMASKEVTEAA 1482
            R GL KLP D LD   +Q + +T + +   EE   RP+ V                                       AA R  EK PWF  NVVDHR+AWC LRDAG RAGMR+VL+ RPWG+   P GG QEA +S VLE        YLK +L EL VVA+QR+GGLS +LL GLE R++DPR   +   L  GLVP+                                    EEAHRR C +RE  W++ +A+ +A A   RK   +R +    P      E +   ++SGWLSREQ+AA+EFARRV +K G+G+    +A  +RK    K + EAA
Sbjct:  245 RKGLLKLPWDGLDVVSEQAKLVTDARVQLIEERRFRPSFVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAQEDAEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALILYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGLSMPASAEWRRK----KRMAEAA 576
[Close]
BLAST of mRNA_P-fluviatile_contig9.15080.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.930e-45
Identity = 127/343 (37.03%), Postives = 168/343 (48.98%), Query Frame = 1 
Query:  640 RTGLQKLPPDKLDTAKKQTEYITPSEMIAKEESGLRPAAVM--------------------------------------VAALRQPEKPWFTSNVVDHRNAWCCLRDAGERAGMRRVLKERPWGNPEDPQGGAQEATSSDVLELMSSAAQHYLKDLLNELKVVAWQRKGGLSADLLAGLESRLQDPRVESAKTELRRGLVPKLPAVA---------------------DLPRSSLQRDEEAHRRECEEREERWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMDTRAKSGWLSREQLAASEFARRVAIKHGIGV---VAALMKRKEMASKEVTEAA 1482
            R GL KLP D LD   +Q + +T + +   EE  LRP+ V                                        AA R+ ++PWF  NVVDHR+AWC LR+AG RAG+R+VL+ RPWG+P  P GG QEA +S VLEL+S+A Q YLK +L EL VVA+QR+GGLS +LL GLE R++DPR   +   L  GLVP+ P                        + PR  L+R+E AHRR C ERE  W++ +A+ +A A+ V                                     AA+EFARRV  K G+G+    +A  +RK    K + EAA
Sbjct:  280 RNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGV-------------------------------------AANEFARRVGFKRGVGLSMPASAEWRRK----KRMAEAA 581
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTJ7_9PHAE8.760e-17064.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB6_ECTSI1.540e-16663.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4T0_9PHAE4.270e-4638.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX3_ECTSI1.930e-4537.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:751781..758339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005360.1
Exons9
Model size1981
Cds size1980
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.4453619-CDS-P-fluviatile_contig9:751780..7523051622817313.4453619-CDS-P-fluviatile_contig9:751780..752305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 751781..752305 -
1693572027.4281964-CDS-P-fluviatile_contig9:751780..7523051693572027.4281964-CDS-P-fluviatile_contig9:751780..752305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 751781..752305 -
1622817313.4594429-CDS-P-fluviatile_contig9:752565..7527601622817313.4594429-CDS-P-fluviatile_contig9:752565..752760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 752566..752760 -
1693572027.4439216-CDS-P-fluviatile_contig9:752565..7527601693572027.4439216-CDS-P-fluviatile_contig9:752565..752760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 752566..752760 -
1622817313.4735377-CDS-P-fluviatile_contig9:753820..7540231622817313.4735377-CDS-P-fluviatile_contig9:753820..754023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 753821..754023 -
1693572027.7178607-CDS-P-fluviatile_contig9:753820..7540231693572027.7178607-CDS-P-fluviatile_contig9:753820..754023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 753821..754023 -
1622817313.4847345-CDS-P-fluviatile_contig9:754584..7546871622817313.4847345-CDS-P-fluviatile_contig9:754584..754687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 754585..754687 -
1693572027.732903-CDS-P-fluviatile_contig9:754584..7546871693572027.732903-CDS-P-fluviatile_contig9:754584..754687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 754585..754687 -
1622817313.4981544-CDS-P-fluviatile_contig9:755198..7553311622817313.4981544-CDS-P-fluviatile_contig9:755198..755331Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 755199..755331 -
1693572027.743153-CDS-P-fluviatile_contig9:755198..7553311693572027.743153-CDS-P-fluviatile_contig9:755198..755331Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 755199..755331 -
1622817313.5095787-CDS-P-fluviatile_contig9:755705..7558691622817313.5095787-CDS-P-fluviatile_contig9:755705..755869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 755706..755869 -
1693572027.7545295-CDS-P-fluviatile_contig9:755705..7558691693572027.7545295-CDS-P-fluviatile_contig9:755705..755869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 755706..755869 -
1622817313.5211663-CDS-P-fluviatile_contig9:756233..7563951622817313.5211663-CDS-P-fluviatile_contig9:756233..756395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 756234..756395 -
1693572027.7702537-CDS-P-fluviatile_contig9:756233..7563951693572027.7702537-CDS-P-fluviatile_contig9:756233..756395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 756234..756395 -
1622817313.5361688-CDS-P-fluviatile_contig9:757371..7578001622817313.5361688-CDS-P-fluviatile_contig9:757371..757800Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 757372..757800 -
1693572027.7808433-CDS-P-fluviatile_contig9:757371..7578001693572027.7808433-CDS-P-fluviatile_contig9:757371..757800Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 757372..757800 -
1622817313.548131-CDS-P-fluviatile_contig9:758273..7583391622817313.548131-CDS-P-fluviatile_contig9:758273..758339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 758274..758339 -
1693572027.7958963-CDS-P-fluviatile_contig9:758273..7583391693572027.7958963-CDS-P-fluviatile_contig9:758273..758339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 758274..758339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15080.1prot_P-fluviatile_contig9.15080.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 751781..758339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15080.1

>prot_P-fluviatile_contig9.15080.1 ID=prot_P-fluviatile_contig9.15080.1|Name=mRNA_P-fluviatile_contig9.15080.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=660bp
VKTEDVKPIVAPVPTNLLMAQQKQQQLQQQQLLHPHLQQQQQQQQQQLLQ
HQRQQQQQQQQQQQKQQQNQHQYQHQHQQHQHQQQHQQQQLAPAPAASVQ
SPPPLVIVSGTAAAPLEVASSPVPTSVSSTTAAAASGTMQNSQILAFGMQ
ALGAVPAPPASVAAQYAQQDAAAAVTHAATAVSQAAWASTVSQHPAPTPT
IFAKPKVYTDVDPRTGLQKLPPDKLDTAKKQTEYITPSEMIAKEESGLRP
AAVMVAALRQPEKPWFTSNVVDHRNAWCCLRDAGERAGMRRVLKERPWGN
PEDPQGGAQEATSSDVLELMSSAAQHYLKDLLNELKVVAWQRKGGLSADL
LAGLESRLQDPRVESAKTELRRGLVPKLPAVADLPRSSLQRDEEAHRREC
EEREERWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMDTRAKS
GWLSREQLAASEFARRVAIKHGIGVVAALMKRKEMASKEVTEAAAAAAAA
TAATAADGNADDPMDVSDRPATGGSGGGSAGGGAGAGGGSGSASSAEGGL
KRPLDPLADGNNPLETVRSIRRRLELDGGDVRSADGVEGSSGGAEANGSA
AVGFTSGDGSVAKAGEDGPRHEINNADLAELMRSTKPRGDPRKWARILSR
AQNSREGTHA
back to top

mRNA from alignment at P-fluviatile_contig9:751781..758339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15080.1 ID=mRNA_P-fluviatile_contig9.15080.1|Name=mRNA_P-fluviatile_contig9.15080.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6559bp|location=Sequence derived from alignment at P-fluviatile_contig9:751781..758339- (Porterinema fluviatile SAG_2381)
GTCAAAACGGAAGACGTGAAGCCAATTGTGGCGCCTGTACCGACCAATCT
TCTTATGGCCCAGCAGGTGAGTGGCTGCCCGCCCTGCTCCCCTACGGAAT
TCAGCGGAGGTGGAAGTATCCGCGCGCTAGCTGCTGTTGCTGCTACGGCT
GCTGCGGCTGCTGCTGCTGCAGCTTGTGCCGTAGTTTGCACGCTGGAGCG
TCGTGGTAGTCAAGCCTGTCAAGTGAAGAGGGTGGGGAGACGGAACGATT
GTACGAAGTATGGAGATGGCCTGGTGGTTCTTGACGCGTTTGTTAAGGCT
CCTGCCAGTTTTGACTTGATGGGGAATGGTACTCCTTTTGCATACGGGCT
CATTTACCGGCTGTCAGCCGACCATTAGTACTTTCCTTAGCTCACTTCTC
GCCCACCCTTTGTCCGTGTCAAAAATAAACATATTGAATGGCCTCGTGAA
ATCCACCCCTTGTCTCTGTCCAAGCCCAGCCCCCCTCCCCACTTGACTTG
TTTCATTTTCCTCGCACGGTCCACCGCGCTGGTCAGCAGAAACAGCAGCA
GCTACAGCAACAACAGCTACTGCACCCACACCTGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCTACTGCAACATCAACGTCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAAAAGCAACAGCAGAACCAGCACCAGTACCAGCACCA
ACACCAGCAACACCAGCACCAGCAACAACATCAGCAGCAACAACTTGCAC
CGGCGCCAGCGGCGTCGGTCCAGTCGCCGCCCCCCCTGGTGATAGTCTCT
GGTACTGCCGCGGCTCCGCTTGAGGTCGCTTCCTCTCCCGTCCCGACGTC
CGTTTCTTCCACTACTGCCGCCGCCGCCTCAGGCACGATGCAAAACTCGC
AGATCCTGGCCTTCGGCATGCAGGCGCTTGGCGCCGTCCCTGCCCCTCCC
GCCAGCGTTGCCGCTCAGGTTTGTGTCCGGGTCTTACCCTTGGCATAATA
ACAAAAAGCGCATGGTGGCGGGGGTGCGCCAGGTCACGGCGTGGCATCTA
GACCTTCGCCTTGTTTTTCATGACGTAATTTTTTACAGAAATATTTGCTG
CAATGCGGTGAATTTGAGTTAGACTCACCCCTGCATGCTTCCTCCCCCCG
GCTCTCACCTCGGTGTTTGCCATCGAGATTGGGTTTTCGTCGCTTGGCAA
CGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTA
CCGTCTTTTTTTCCTCTGTTTTTTTTGGCGGTAACCATAATGGTGGTCGA
GAAGACCATGTTGTGCGGGGTGGAGAACCCTCGCTCCGTGCAAGGGGGAT
GATCGCACCACGTTGTGTTAAAATGGTCAAGCACGCTCGAGGTAGTTACT
CAGTGCTTATAACTGTCTCTGGAAGTGAAAGCACCAGAAAATAAATTAAG
CCATACGCAGCTGTCATCCGTGTGCAAGGAAGTAAGCACAAGATGCCGAA
CACCCTTAGCAGGATGCAGCGAACCCTTCACGCGACTCGCCGAATACCTC
ACGGCGCTTCGCGCTTGGTGGTGTGAGAGCCTGGTCCGGTGAGAACCCGA
CGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACT
ACGGCATGCATGACTATGAGTACACCCCGACGATGCAGGCCGAGGAGACA
ATCGACAAAATTTTCTCGTCAAATAATTTTTTTTTGAAGGCTTTCTTCTC
CCTTGAACTGGCAGTGGGGGTCTATGGTTTCTTCGCCGCGGCTAATGTTC
GTGTTTGCATGTTTTCGATGGCATGATGGTACGCGTTGTCTTCGGCACGT
ACTACCCAAGCCTCCAGGCGCTTGATTTCTGCAATTTTCAACAACCGACC
CCCCCTCCCCTGTTCTTCCCTCTACACATGACGCCTCGTGAAAGTACGCT
CAGCAGGACGCAGCAGCGGCCGTCACTCACGCAGCCACAGCTGTCTCACA
GGCGGCTTGGGCCTCGACGGTGTCCCAGCATCCAGCGCCAACGCCTACGA
TTTTTGCAAAACCCAAAGTATACACTGATGTCGACCCCAGGACCGGCCTC
CAGAAGGTGCGCTCGTAGCGGACGACTTCGAGGAGGACGCCCATCCTTAT
CACTATTGAAGATACCACGGACCTCCCCCTCGTGATTGCCCAGTTTTCTA
TTATTATCGTGGCGGGGCGGGTAAGCGGGGGCAGGCGGGGGAGAGTGACA
ACCAAGAGCATGGCGCAAATTCTCGGAGGAGGCGTTGCTTCGACTGCGAC
GGGGCGGTTTTGCCAGGGGGCACGCGAGCACCCTCAACCTCCTTCTTACG
AGGCAGCATCGCGCCTTGTGCGCCCCCTCTTCACCTGCCCACACTGAAGC
AATTACGGATTTCATTTTTTTGTTGTTTTTATGTTGTCCTTGTTGCTGCG
GTCGTCGTTGTGGTCGTCAGCTACCCCCTGACAAGCTCGACACGGCGAAG
AAGCAGACCGAATACATCACGCCCTCGGAGATGATCGCGAAGGAGGAGAG
CGGCTTGAGACCCGCCGCCGTGATGGTGGCTGCGCTGCGGCAACCGGAGA
AGCCGTGGTTCACGAGCAACGTCGTCGACCACAGGTGCCGAACATGTCGA
TGCGTTGATTCGATTGTTTACTTGGGAGCAAGTGACAATATTCGTTTCCC
TCAAAATTCTGCGCACGGCAAACCCGTCTTTGAATTTGATCGGCTTGCTT
GTCGGCAGCCCGTGTACAGACAGCTTGCGGCGTTACCGACCGCAGTACAC
ATGGACCTTTCTCTTCCATCACATGGATCTTCTCACCCAGTCTTTACGTC
GGGCCCCAGGCATCTTTCTTATCCTCACGCGCTTGGTCGCTTCCCCGTTT
CTTCCTGTTTCGTTTCATAAAGTTCCCAAGTTCATCCCCACCTCGACCCT
CCCCCCTTCCACCCTCCCCCCCCCCCCAAACCTTCTTTCGCCGGCGTGCG
CCCTCCAGGAACGCGTGGTGCTGCCTCCGAGACGCGGGGGAGCGAGCCGG
CATGCGGCGTGTCCTGAAAGAAAGGCCGTGGGGAAACCCGGAAGATCCTC
AGGGTGGAGCGCAGGAGGCGACCAGCAGCGACGTGCTGGAGGTATCCTAC
CAACGTCTACCGTGCCGAACGAAGCAAATGCGTCGAAGAACGTTGCAATA
TCGGCGCGATGTCACGAGGGGGGGGGTCGAGACCGCTACACGAGTTGTTC
TCGGTGGTGCGCCTTGCGCCTTGTGTTGCGAAGCACATGCCGTGCTGCAA
GCACCTTCTCCCGTGCCGCGGAGATGCGCTCGCGAGACCATGCGCTGGTG
CGGTGATTAGGATGGGCTTGAATAGGGTCATCATCGCCTCGGAGGAGGGG
GGAGAAGAAGCGGGGGGGGGAAGGCAGGATGTGGTACCGGGCCGCTCACA
CGCGAACTTCACACGCGAGCACGGCCGGAGAATTGGCCTCGTGCGTGTTC
CACGCCAACGTGCCGCCGGTCGAACGTGGTGAAGGAAGTATCTTGTCGGG
CGGCCGGGTGAGCCGTGGACACAAGCGCGTACTTTTCCCTCTGCATTTGC
CCTCCGACACCTCCTAAACGCTGTTGCTGTCTTCGGTGCCGCCCTCTTGC
AGCTCATGTCGTCGGCAGCACAGCACTATTTGAAGGACCTGTTGAACGAG
CTGAAGGTGGTGGCGTGGCAGCGAAAGGGCGGGCTGTCCGCGGATCTGCT
TGCAGGTGATTTTCACAACAAAGCGGGCGTGTCTCATCCAAAGTACACGG
TATCATGTTTTCAAGTCTTTGTTGAAATTTACACCCTACCAGGTCTTTCT
GACACAACTTGTGCAACAGGAAACTATACTTCGACGTGGCACGAAGGCTT
GGCGCAGATCCGAAGTAGGTTGAGAAAAAAAAACATTTATGGTTGACAAA
GTATTCCGGTACACATGTCAAAGCAAGAGAGCGAGAAAACGGGGGGGAAA
GTACGCATAAGAACGCACCCGGTTGGCCTCCTCACCTTCTGCCTCCGCCG
ATAAAGGCTCGCAGATTGGCTGAAACGGCATCCATAGCTTTTGCTGGCAA
GGTGCGATCTCTGTGCTTTCATTTTGTTTTCTTGGACCGATGTTAGCAAT
TCAAGTCGAAATATTCCCTGTATGGTCGCACGTGCGGTGAATTGAGTTGC
GGTCGATGACGAATCGATAAATCAAACAGCAGGGGTTGCCTCCGCAGTCG
GTCAAGCGCGAAAATCGTTGCAACGTTGCCCCCCCCACCCCCGCTTCCCT
GGCCCATTTTGAAAAGGCCTCGAGTCTCGTTTGCAAGACCCGAGGGTGGA
GTCCGCCAAAACGGAGCTCCGACGAGGCCTTGTGCCGAAGCTCCCCGCAG
TCGCGGATCTGCCCAGGTCGTCGCTTCAGAGGGACGAGGAAGCGCATCGG
CGGGAGTGCGAGGAGAGGGAGGAGCGGTGGGATTCGGAGCTGGCGGACAC
GCTCGCAACGGCGGAAGAGGTCAGTCGGTCAGCACAGGAGCACGCGGAGC
CTAGTTTCACGCATGCCCGTGTCCTGTTCTTCTCCAGGAGCGATTGGTGT
AACGATGACTACGACCCCTATCCTTCCTTCTCCCTTCCCCCCTCCAGCTA
GAGCTGATTTTTTTTTTTCTTCCGGAATGACCACCCTTGGGAGAGGCGAA
TAGGGGGGGTGTATGATCATTTGAGCTCCAGCGGGGTGTTCTCGCGACTT
TCCCCGAATGCTGTTGGAAAGCGAGGTTTCCACGTGAGCAGTGCAGGGTT
CGAGCAAGTTTGAAGTGCGTTCTGCGAGAGTTGCGGAACAAACCATTGTA
ATTGTTTACGAAGTACTGTGCCATCTAGCCGGCGACATTCACCCGGAACG
GTTTGGGATGGGTTTGCGCGGGGCCCGGCAAGCAAGGCACACGTCATATG
TGGGCAATCAGAGTACGTCGCATGGCCTGGGGTGGTCTAGGTGGAGGTGT
GCAGATAATGATACAGAAGCTCTGCATAGCCTATTCATCCGTCGGCGTGT
TCAATGTTAGAGCGTGTATGCTCCCCGCCATGCATTCTCACCAGCATTGG
ACGCCCGTCTGGGTGTGTCGGTTCTACGCTTCTCTGTTGCCGTGGCTTGA
CTCGCGTTGTCTCTCATTTTTCGCTGTGAGTGCCGATCGGAATAACACGT
ATTCAACAGTCATGAAAAGATGTCGCAGAATCGTCTTCCCTTCTAGTGCT
CGTCAACTACCGCTCGAGCACGGTACTTGCACACCGGGAACAGTCTTCCT
TCACTGGAGTCAGTTTTGTTTTTATCGCGGTGACGAACCATCACAACGGT
GGTTATTGATGGTGACAGGTCGATGCTCGCGTATGGGAACGGTTGATGCG
TCGTCGGCGAGGATGCGGCTTGAACCTGCGTTGCTCTCTGTGATACGCTA
CAACCATGACGAGGGTTCCATCGTGTGTCCGGAAGCGGTTGATCCGCTAC
CCGAACTTACGTTCTAACTTTTTCGTTGCGGTGCACCCACCTTCTTGGTC
ATGGCGATGAAATGACCGACGCATCGCAGGTTCGGAAGCGTTTGATCCGA
CGCGGCACGAAGAAGCTCCCGCCGGGGAGTTTCAAGTGGTGGGAGGACAT
GGACACAAGGGCCAAGTCCGGGTGGCTCTCGAGGGAGCAGCTAGCGGCTT
CCGAGTTTGCTAGGAGAGTGGCGATCAAGCACGGCATCGGCGTGGTCGCT
GCGCTGATGAAGAGGAAGGAAATGGTACGTGTGTTCGCGTGATCCGATTT
TTGTGTATAATAGTTGGTCCTTGTGTTGGCGGGCGCCGGGCGTGCATTAC
TGGGAGCGGGTGGCCCCACGTACCAGGGCGTGGAATGTCTCGTATGCTCA
ACTTAGTGGGATGGAATACGCTTCCCCCCTCCACCCTCTTCGAAACTCGT
GCACAGCATATTTGCACTATTTTATCGTTGATGGCGCGGTTTATACGCAT
GTCAATTCCCCGGTCCTGTTGTCCGTCCCCGAAGGCGTCGAAGGAAGTCA
CGGAAGCCGCTGCCGCCGCTGCCGCCGCCACCGCTGCTACCGCCGCCGAC
GGCAACGCTGACGACCCCATGGACGTGAGCGACCGGCCGGCGACCGGAGG
CAGCGGCGGCGGCAGCGCCGGTGGCGGCGCCGGGGCCGGCGGCGGTAGCG
GAAGCGCGTCGTCGGCTGAAGGTGGCTTGAAACGGCCGCTCGACCCCCTG
GCCGACGGAAACAACCCCCTCGAAACGGTCAGGAGCATTCGCAGGAGGCT
CGAGCTCGACGGGGGCGACGTGAGGAGCGCGGACGGCGTGGAGGGGTCGA
GCGGTGGAGCCGAGGCGAACGGGTCGGCGGCCGTCGGGTTTACCAGCGGC
GACGGCAGTGTGGCTAAAGCCGGGGAGGATGGGCCGAGGCACGAGATCAA
CAACGCCGACCTGGCGGAGCTCATGAGGAGCACCAAGCCTAGGGGGGATC
CTCGGAAATGGGCCAGGATCCTGTCTCGGGCGCAGAATTCGCGCGAGGGT
ACGCATGCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:751781..758339-

>mRNA_P-fluviatile_contig9.15080.1 ID=mRNA_P-fluviatile_contig9.15080.1|Name=mRNA_P-fluviatile_contig9.15080.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3960bp|location=Sequence derived from alignment at P-fluviatile_contig9:751781..758339- (Porterinema fluviatile SAG_2381)
GTCAAAACGGAAGACGTGAAGCCAATTGTGGCGCCTGTACCGACCAATCT
TCTTATGGCCCAGCAGGTCAAAACGGAAGACGTGAAGCCAATTGTGGCGC
CTGTACCGACCAATCTTCTTATGGCCCAGCAGAAACAGCAGCAGCTACAG
CAACAACAGCTACTGCACCCACACCTGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCTACTGCAACATCAACGTCAACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAAAAGCAACAGCAGAACCAGCACCAGTACCAGCACCAACACCAG
CAACACCAGCACCAGCAACAACATCAGCAGCAACAACTTGCACCGGCGCC
AGCGGCGTCGGTCCAGTCGCCGCCCCCCCTGGTGATAGTCTCTGGTACTG
CCGCGGCTCCGCTTGAGGTCGCTTCCTCTCCCGTCCCGACGTCCGTTTCT
TCCACTACTGCCGCCGCCGCCTCAGGCACGATGCAAAACTCGCAGATCCT
GGCCTTCGGCATGCAGGCGCTTGGCGCCGTCCCTGCCCCTCCCGCCAGCG
TTGCCGCTCAGAAACAGCAGCAGCTACAGCAACAACAGCTACTGCACCCA
CACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACTGCAACATCA
ACGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAGCAACAGCAGA
ACCAGCACCAGTACCAGCACCAACACCAGCAACACCAGCACCAGCAACAA
CATCAGCAGCAACAACTTGCACCGGCGCCAGCGGCGTCGGTCCAGTCGCC
GCCCCCCCTGGTGATAGTCTCTGGTACTGCCGCGGCTCCGCTTGAGGTCG
CTTCCTCTCCCGTCCCGACGTCCGTTTCTTCCACTACTGCCGCCGCCGCC
TCAGGCACGATGCAAAACTCGCAGATCCTGGCCTTCGGCATGCAGGCGCT
TGGCGCCGTCCCTGCCCCTCCCGCCAGCGTTGCCGCTCAGTACGCTCAGC
AGGACGCAGCAGCGGCCGTCACTCACGCAGCCACAGCTGTCTCACAGGCG
GCTTGGGCCTCGACGGTGTCCCAGCATCCAGCGCCAACGCCTACGATTTT
TGCAAAACCCAAAGTATACACTGATGTCGACCCCAGGACCGGCCTCCAGA
AGTACGCTCAGCAGGACGCAGCAGCGGCCGTCACTCACGCAGCCACAGCT
GTCTCACAGGCGGCTTGGGCCTCGACGGTGTCCCAGCATCCAGCGCCAAC
GCCTACGATTTTTGCAAAACCCAAAGTATACACTGATGTCGACCCCAGGA
CCGGCCTCCAGAAGCTACCCCCTGACAAGCTCGACACGGCGAAGAAGCAG
ACCGAATACATCACGCCCTCGGAGATGATCGCGAAGGAGGAGAGCGGCTT
GAGACCCGCCGCCGTGATGGTGGCTGCGCTGCGGCAACCGGAGAAGCCGT
GGTTCACGAGCAACGTCGTCGACCACAGCTACCCCCTGACAAGCTCGACA
CGGCGAAGAAGCAGACCGAATACATCACGCCCTCGGAGATGATCGCGAAG
GAGGAGAGCGGCTTGAGACCCGCCGCCGTGATGGTGGCTGCGCTGCGGCA
ACCGGAGAAGCCGTGGTTCACGAGCAACGTCGTCGACCACAGGAACGCGT
GGTGCTGCCTCCGAGACGCGGGGGAGCGAGCCGGCATGCGGCGTGTCCTG
AAAGAAAGGCCGTGGGGAAACCCGGAAGATCCTCAGGGTGGAGCGCAGGA
GGCGACCAGCAGCGACGTGCTGGAGGAACGCGTGGTGCTGCCTCCGAGAC
GCGGGGGAGCGAGCCGGCATGCGGCGTGTCCTGAAAGAAAGGCCGTGGGG
AAACCCGGAAGATCCTCAGGGTGGAGCGCAGGAGGCGACCAGCAGCGACG
TGCTGGAGCTCATGTCGTCGGCAGCACAGCACTATTTGAAGGACCTGTTG
AACGAGCTGAAGGTGGTGGCGTGGCAGCGAAAGGGCGGGCTGTCCGCGGA
TCTGCTTGCAGCTCATGTCGTCGGCAGCACAGCACTATTTGAAGGACCTG
TTGAACGAGCTGAAGGTGGTGGCGTGGCAGCGAAAGGGCGGGCTGTCCGC
GGATCTGCTTGCAGGCCTCGAGTCTCGTTTGCAAGACCCGAGGGTGGAGT
CCGCCAAAACGGAGCTCCGACGAGGCCTTGTGCCGAAGCTCCCCGCAGTC
GCGGATCTGCCCAGGTCGTCGCTTCAGAGGGACGAGGAAGCGCATCGGCG
GGAGTGCGAGGAGAGGGAGGAGCGGTGGGATTCGGAGCTGGCGGACACGC
TCGCAACGGCGGAAGAGGCCTCGAGTCTCGTTTGCAAGACCCGAGGGTGG
AGTCCGCCAAAACGGAGCTCCGACGAGGCCTTGTGCCGAAGCTCCCCGCA
GTCGCGGATCTGCCCAGGTCGTCGCTTCAGAGGGACGAGGAAGCGCATCG
GCGGGAGTGCGAGGAGAGGGAGGAGCGGTGGGATTCGGAGCTGGCGGACA
CGCTCGCAACGGCGGAAGAGGTTCGGAAGCGTTTGATCCGACGCGGCACG
AAGAAGCTCCCGCCGGGGAGTTTCAAGTGGTGGGAGGACATGGACACAAG
GGCCAAGTCCGGGTGGCTCTCGAGGGAGCAGCTAGCGGCTTCCGAGTTTG
CTAGGAGAGTGGCGATCAAGCACGGCATCGGCGTGGTCGCTGCGCTGATG
AAGAGGAAGGAAATGGTTCGGAAGCGTTTGATCCGACGCGGCACGAAGAA
GCTCCCGCCGGGGAGTTTCAAGTGGTGGGAGGACATGGACACAAGGGCCA
AGTCCGGGTGGCTCTCGAGGGAGCAGCTAGCGGCTTCCGAGTTTGCTAGG
AGAGTGGCGATCAAGCACGGCATCGGCGTGGTCGCTGCGCTGATGAAGAG
GAAGGAAATGGCGTCGAAGGAAGTCACGGAAGCCGCTGCCGCCGCTGCCG
CCGCCACCGCTGCTACCGCCGCCGACGGCAACGCTGACGACCCCATGGAC
GTGAGCGACCGGCCGGCGACCGGAGGCAGCGGCGGCGGCAGCGCCGGTGG
CGGCGCCGGGGCCGGCGGCGGTAGCGGAAGCGCGTCGTCGGCTGAAGGTG
GCTTGAAACGGCCGCTCGACCCCCTGGCCGACGGAAACAACCCCCTCGAA
ACGGTCAGGAGCATTCGCAGGAGGCTCGAGCTCGACGGGGGCGACGTGAG
GAGCGCGGACGGCGTGGAGGGGTCGAGCGGTGGAGCCGAGGCGAACGGGT
CGGCGGCCGTCGGGTTTACCAGCGGCGACGGCAGTGTGGCTAAAGCCGGG
GAGGATGGGCCGAGGCACGAGATCAACAACGCCGACCTGGCGGAGCTCAT
GAGGAGCACCAAGCCTAGGGGGGATCCTCGGAAATGGGCCAGGATCCTGT
CTCGGGCGCAGAATTCGCGCGAGGGTACGCATGCCGCGTCGAAGGAAGTC
ACGGAAGCCGCTGCCGCCGCTGCCGCCGCCACCGCTGCTACCGCCGCCGA
CGGCAACGCTGACGACCCCATGGACGTGAGCGACCGGCCGGCGACCGGAG
GCAGCGGCGGCGGCAGCGCCGGTGGCGGCGCCGGGGCCGGCGGCGGTAGC
GGAAGCGCGTCGTCGGCTGAAGGTGGCTTGAAACGGCCGCTCGACCCCCT
GGCCGACGGAAACAACCCCCTCGAAACGGTCAGGAGCATTCGCAGGAGGC
TCGAGCTCGACGGGGGCGACGTGAGGAGCGCGGACGGCGTGGAGGGGTCG
AGCGGTGGAGCCGAGGCGAACGGGTCGGCGGCCGTCGGGTTTACCAGCGG
CGACGGCAGTGTGGCTAAAGCCGGGGAGGATGGGCCGAGGCACGAGATCA
ACAACGCCGACCTGGCGGAGCTCATGAGGAGCACCAAGCCTAGGGGGGAT
CCTCGGAAATGGGCCAGGATCCTGTCTCGGGCGCAGAATTCGCGCGAGGG
TACGCATGCC
back to top