mRNA_P-fluviatile_contig9.15044.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15044.1
Unique NamemRNA_P-fluviatile_contig9.15044.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A6H5KPX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX9_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 2.240e-97
Identity = 141/163 (86.50%), Postives = 151/163 (92.64%), Query Frame = 1
Query:    1 MKFQLITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            MKFQL+ AISA+LCAL A A R DPKECEVC++VL+Q+ ESM  ADRKNK+KIE+AIDAFC QRLSSRDDKMCYYFLPIKKTIS PFSTGMPK KVCQRLK SNAE+CEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARC+ATEHLEL
Sbjct:   79 MKFQLVAAISAVLCALTAAAPRADPKECEVCVNVLEQISESMPAADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISHPFSTGMPKSKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 241          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: D8LUC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC3_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.430e-77
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 1
Query:  124 MNPADRKNKEKIESAIDAFCGQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            M  ADRKNK+KIE+AIDAFC QRLSSRDDKMCYYFLPIKKTIS PFSTGMPKLKVCQRLK SNAE+CEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARC+ATEHLEL
Sbjct:    1 MPAADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 122          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A836CA80_9STRA (Armet protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA80_9STRA)

HSP 1 Score: 205 bits (522), Expect = 3.640e-65
Identity = 101/164 (61.59%), Postives = 126/164 (76.83%), Query Frame = 1
Query:    1 MKFQLITAISAMLCALAAGAA-REDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            MK   +    A++   A GAA   +PKECEVCISVL++V   +N AD KNK+KIE AI+ +C Q+L ++DDKMCY  + IKK +SQPFS G+PKLKVCQRLKK NA+IC ++YPIKVDK N+DYN LRVK LK ILA+RG  CDGC+EKSDYV RC+ TE++EL
Sbjct:    1 MKVVSVVFAGALVGLAAVGAAPAANPKECEVCISVLEKVEGLLNAADTKNKDKIEEAIEKYCSQKLPAKDDKMCYNLVTIKKHVSQPFSLGLPKLKVCQRLKKDNADICNMQYPIKVDKGNVDYNTLRVKALKSILAERGARCDGCIEKSDYVKRCKETENMEL 164          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A7S2Y4H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4H6_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.020e-62
Identity = 99/160 (61.88%), Postives = 127/160 (79.38%), Query Frame = 1
Query:   13 LITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            LI AIS ++  L+  A  +DPK CEVCI+VL+Q+  +M+ AD+KNK KIE+AIDAFC Q+ L+++D KMCYY  PIK+ +SQPFSTGMPK KVCQRL K N +IC +KYP+KV+K+  DY+KLRVK LK ILA+RGV+C GCLEK DYV RC+ T H++L
Sbjct:    9 LILAISFVIATLSRAA--DDPKACEVCINVLEQIDATMDKADKKNKPKIEAAIDAFCDQKMLNAKDKKMCYYLDPIKRAVSQPFSTGMPKNKVCQRLTKDNPDICAVKYPMKVEKDT-DYSKLRVKALKQILAERGVECTGCLEKPDYVKRCEETAHMDL 165          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A4D9D3E5_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3E5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.570e-50
Identity = 87/158 (55.06%), Postives = 118/158 (74.68%), Query Frame = 1
Query:   13 LITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHL 483
            L+ A++A+L  LA  A   DPK+CEVCI VL+++   M    +KNK  +E AIDA+C ++ + +++ K+CY+  PIK+ +SQPFSTGMPK KVC RLKK +AEIC IKYP+KVD +  DY KLRVK+LK ILA+RGV+C GCLEK D++ +C+ T HL
Sbjct:    9 LVAALAALL-GLANLAHASDPKDCEVCIGVLEKIDAGMEAKAKKNKLAVEDAIDAYCSRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCARLKKKSAEICGIKYPVKVDSQT-DYTKLRVKELKAILAERGVECTGCLEKPDFIKKCEETAHL 164          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A1E7FEL8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEL8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.920e-50
Identity = 84/158 (53.16%), Postives = 114/158 (72.15%), Query Frame = 1
Query:   25 ISAMLCALAAGA-AREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFC---GQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHL 483
            +S ++  LA  A A EDPKECEVCI V+D++  +M  AD K K  IE+A++ +C    ++L++R+ K+CYY  PIK+ I+QPFS GM  LK+C+R+ KSN EIC +KYP+K DK E  D +KLRVKQLK IL +RGVD  G LEK ++V + +ATEHL
Sbjct:    4 VSTLIACLATAALAAEDPKECEVCIKVMDEIRATMTKADTKKKPMIENAMNTYCENKDEKLTAREKKICYYIDPIKRDIAQPFSLGMSSLKLCKRITKSNPEICSVKYPVKTDKMETKDLSKLRVKQLKKILDERGVDYKGLLEKDEFVKKVEATEHL 161          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A1Z5JHL7_FISSO (RNA-binding protein 15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHL7_FISSO)

HSP 1 Score: 166 bits (420), Expect = 1.190e-49
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   79 ECEVCISVLDQVHESMNPADRKNKEKIESAIDAFC---GQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHL 483
            ECEVC+ V+D+V  SM+  D K K +IE+AI  +C   G +LSSR+ K+CYY  PIK+ ++QPFS GMP LKVC+R+ KSN EIC +K P+K +  E  D +KLRVKQLK ILADRGV+C GC+EK ++V R Q TEHL
Sbjct:   22 ECEVCVKVMDEVRASMSKEDSKKKPEIEAAIGKYCANKGNKLSSREKKICYYIDPIKRDVAQPFSLGMPSLKVCERINKSNPEICSVKLPVKTENMEKQDISKLRVKQLKQILADRGVECVGCVEKEEFVKRVQETEHL 160          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A7S2SV22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV22_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.290e-49
Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 1
Query:   13 LITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDKENM--DYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            L  A+ A+    AA AA+EDPKECEVC+ VL+ V   ++  ++ +K  IE A+   C ++ LS+++ KMCY   PIKK++S PFS  MPK KVCQRLKK N +ICEIK+P+KV KE    D +KLRVKQLK IL DRGV+C GC+EK+D+V +   T+HLE 
Sbjct:   18 LAAAVLALGSPAAAKAAKEDPKECEVCVKVLEDVEALLDSDEKSSKVSIEEALGTHCARKDLSAKEKKMCYNMEPIKKSVSHPFSLRMPKKKVCQRLKKDNPDICEIKFPVKVAKEAKPEDVSKLRVKQLKQILNDRGVECKGCVEKADFVKKVLDTQHLEF 179          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: B8BWT8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWT8_THAPS)

HSP 1 Score: 163 bits (413), Expect = 1.460e-48
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query:   16 ITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNKEKIESAIDAFCGQ-RLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHL 483
            I+ +SA L A ++  A  DP+ECEVC+ V+  V ++M   D+K+K KIE AI A C +  LS+R+ K+CYY  PIK+ ++QPFS GM   KVC+R+ K+N EIC +K+P+K +  E  D  KLRVKQLK IL DRGV+C GC+EK +++AR Q TEHL
Sbjct:    4 ISILSAALLAASSVNAASDPRECEVCMKVMQDVRDAMPKEDQKDKPKIEQAIGAHCKKDTLSARERKICYYIDPIKRDVAQPFSLGMTVEKVCKRIDKTNPEICSVKFPVKTENLEKKDLTKLRVKQLKSILLDRGVECKGCVEKEEFIARVQETEHL 161          
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Match: A0A7S0XC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC71_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.500e-48
Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = 1
Query:   52 AGAAREDPKECEVCISVLDQVHESMNPADRKN-KEKIESAIDAFCG------------QRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKKSNAEICEIKYPIKVDK---ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCQATEHLEL 489
            A A  +DP++CEVCI+ L+ V + + PAD+K+ K  IE AI   C             +  S +D KMCY F PIKK+IS PF+TGMPK KVCQRL+K N EICE+KYP+KV+K   E  DYNKL+VKQLK IL++RGV C GC EK ++V +CQ TEHLE+
Sbjct:   24 AKAPTKDPRDCEVCIANLEAV-DKLLPADKKSDKAAIEKAIGKRCTLSGFGSEWKPNPELTSPKDVKMCYLFEPIKKSISTPFATGMPKAKVCQRLQKDNPEICEVKYPLKVEKKEGEATDYNKLKVKQLKEILSNRGVTCTGCTEKPEFVKKCQETEHLEM 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPX9_9PHAE2.240e-9786.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUC3_ECTSI2.430e-7792.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA80_9STRA3.640e-6561.59Armet protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2Y4H6_9STRA1.020e-6261.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D3E5_9STRA3.570e-5055.06Bifunctional lysine-specific demethylase and histi... [more]
A0A1E7FEL8_9STRA8.920e-5053.16Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A1Z5JHL7_FISSO1.190e-4957.55RNA-binding protein 15 n=2 Tax=Fistulifera solaris... [more]
A0A7S2SV22_9STRA1.290e-4953.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BWT8_THAPS1.460e-4851.90Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0XC71_9STRA3.500e-4854.32Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:377286..380300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue8.8e-60
Seed eggNOG ortholog2880.D8LUC3
Preferred nameMANF
KEGG koko:K13190
GOsGO:0001963,GO:0001976,GO:0001980,GO:0002014,GO:0002576,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003084,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006584,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0017144,GO:0018958,GO:0019725,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0035150,GO:0035296,GO:0042310,GO:0042417,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045777,GO:0046903,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050880,GO:0051179,GO:0051234,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0071542,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090066,GO:0097164,GO:0097746,GO:0097756,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:1901360,GO:1901564,GO:1901615,GO:1905897
EggNOG free text desc.neurotrophic factor
EggNOG OGsKOG4154@1,KOG4154@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionArmet protein
Ec32 orthologEc-14_004440.1
Exons4
Model size492
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15044.1prot_P-fluviatile_contig9.15044.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 377286..380300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817308.7892907-CDS-P-fluviatile_contig9:377285..3773731622817308.7892907-CDS-P-fluviatile_contig9:377285..377373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 377286..377373 +
1693572010.083983-CDS-P-fluviatile_contig9:377285..3773731693572010.083983-CDS-P-fluviatile_contig9:377285..377373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 377286..377373 +
1622817308.8050706-CDS-P-fluviatile_contig9:378144..3782721622817308.8050706-CDS-P-fluviatile_contig9:378144..378272Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 378145..378272 +
1693572010.2389214-CDS-P-fluviatile_contig9:378144..3782721693572010.2389214-CDS-P-fluviatile_contig9:378144..378272Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 378145..378272 +
1622817308.816069-CDS-P-fluviatile_contig9:379546..3796671622817308.816069-CDS-P-fluviatile_contig9:379546..379667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 379547..379667 +
1693572010.2656229-CDS-P-fluviatile_contig9:379546..3796671693572010.2656229-CDS-P-fluviatile_contig9:379546..379667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 379547..379667 +
1622817308.826785-CDS-P-fluviatile_contig9:380145..3803001622817308.826785-CDS-P-fluviatile_contig9:380145..380300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 380146..380300 +
1693572010.2769887-CDS-P-fluviatile_contig9:380145..3803001693572010.2769887-CDS-P-fluviatile_contig9:380145..380300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 380146..380300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15044.1

>prot_P-fluviatile_contig9.15044.1 ID=prot_P-fluviatile_contig9.15044.1|Name=mRNA_P-fluviatile_contig9.15044.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=164bp
MKFQLITAISAMLCALAAGAAREDPKECEVCISVLDQVHESMNPADRKNK
EKIESAIDAFCGQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRL
KKSNAEICEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSD
YVARCQATEHLEL*
back to top

mRNA from alignment at P-fluviatile_contig9:377286..380300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15044.1 ID=mRNA_P-fluviatile_contig9.15044.1|Name=mRNA_P-fluviatile_contig9.15044.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3015bp|location=Sequence derived from alignment at P-fluviatile_contig9:377286..380300+ (Porterinema fluviatile SAG_2381)
ATGAAGTTCCAACTGATAACTGCGATCTCAGCGATGCTCTGCGCCTTGGC AGCAGGAGCTGCTCGAGAGGATCCCAAAGAGTGTGAAGGTAGGGTTCGCA CTACTGTTGAAACGCACATGGAGGAAAAGAGTGGCAAAAGACGGAGTGAT AGCGAGAGATAATGTCGAGAGCCTTATAGTGCCGCATCGCTCGACTGTCT TCAACCGCTCGCTGACGAGTTATCGAGACACAAAAATCGGCTCAGGGGGT GTGATATCTTGTGCAACATACGTTCCTCGTACGGCTGTGGGCGCTTGCAT GCGTTTTGACACACCTGAATATTGGCGAACCGGTCATACCGACTGTTTAG CACACGGGCAGTTCGAAACCATGGAAGTGGTTTTGAGACACATCAGTCAC TGGATGGAATATTTTGCAGCGCTTGTTGGAGATCAACGAACAGTAGCGGT CACATGGTAGCGAAAGGTTGCCGAAAATACATTGCGGCATGACGGGCCCT CTCTATGGTGGCGGAATCACGAAGGAACTGGATTCGCCGACGAACGAGAG ACTTTTCGCGAGATTTCTCCGTCGTGCTTGGGGAAAGATTTTCCCGTTGA TTGCCGAAGGCGATCCAATGCAAAGATCGGCACTGCCATTTCACGGCCCT CCCACTGCCGTACACGGCTGGCACCGCACACCAAACGACCCCGAAAGGCG CTGCTTGATCCCGATGGAAGAAAAAAAAGAAGCGTATCTCTTCCTCCTTC CCCCTGTGCTGCCAACCCCCGCCAACCCCCGCCCGCCGCGCGCGCGCTCG CGCCCGCTTCGATGATGTGCGCAATTTATGTGTGTCACTTCTTTTGCTGT GGTTTGCAGTCTGCATTAGCGTACTGGACCAGGTCCACGAGTCGATGAAC CCCGCGGACCGCAAAAATAAGGAGAAGATCGAGTCGGCCATCGATGCCTT CTGCGGCCAACGCCTTTCCTCGCGGGACGACAAGATGGTGAGCTTAACTT AGCGAGATAACCACAGCAGTGGCGCGGCAAGGATCATGAGCAGGCTACCG CCATCTGCGGCCACGACAAACCCTGGGTTTTGCGATGGTTGAGTTGCTCA GCCTGAGCTGGAGGGGGGGCGGGGTGTACTCATAGTCGTGCATGCCGTAG TCGTTTGACCATGGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCC GGGTTCTCACCGGACCAGGCTCTCAAACCACCAAGTGCGAAGCGCCGTGA GGTATTCGGCGAGTAGCATGAAGGGTGCGCTGCATCCTGGTAAGGGTGTT CGGCATCTTGTGCTTACTTCCTTGCATACGGATGACAGCTGCGTATGGCT TGATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTG TAACTGCCTCGAGGGTGCTTGACCGTTTTAACACAACGTGGTGCGATCAT CCCCCTTGCGCGGCGTGAGGGTTCTCCACCCCGCACAACATGATCTTCTC CACCACCATTATGGTTACCGCAAAAAAAAAACAGAGGAAAAAAAAAGACG GTAAGCGGGTTGCCGAGTTCCCGAAGTGAATTGGCTTGTTTTACAACGTC GTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCGAGGTGAGAG CCGGCGGGGGGTGGAGGGGGGCCTTGAAATAATTTTTTTGGGGGAGCAAG CGTTCGGGCTTCCTGAAGGAAGTGACCCTACGACAGCACTAAATACTCAA CCCCAACGGTATTTGGTACGTTACGAGGTTGTCTGGGCGTCAACGGAAAC TTCCGTGCCCGGGCGCGAAAGCACGTGCCCATCATGGCTCCTTGTAGTTG TGACGATCCTCGCCACGGTGGAAAATCACATAAGTTGGGGCACAGTGATT CTGGATGTATACCGAATCTTTTTGCTGTTCCTCGTTGCGGGTACAGCATG ATGAGAAGTACCATTCATGAATGGCTATTGCCGGTGATTATCCCGCTTTT CCGCTACGTAACGGAATCTATGTACGTCAGTTGGAATTCCTGTTCCTTCG CTCCCGGACCTTCTCGATTTCTTTGGCTGGACTTTCACTAGCAGGCGGTC TCCTTCTAATTTACTTTGAGAAGTCAGTCTTGAACTTCGCCGAGTTGGTG TTTTGAGAATCCTGACTAACGGCCGTTCATTCTTCCCATCCACTGACTGC CTGCCTCGGTCGGCTTTCCCCGTCAAATGCGCTGCGGTCGCCTCGCTCGC GTGCTCCTCAGTGCTATTACTTCTTGCCGATTAAGAAGACAATCTCGCAA CCTTTCTCGACGGGCATGCCGAAGTTGAAGGTTTGCCAGCGGCTCAAGAA GTCCAACGCTGAAATTTGCGAGATCAAATACCGTAAGTTCACGCGGTGGA ACAGAAGTAGGAGAATAGGGGAGGGGGTGCAGTTGGAATGGGGAATAGGT GCACAGGGGCACCTTCACCACGCCCAAAGTCTATGCTTTCAAACTCGCCT TGGGCATCTATTTGAAGAAATTTATGTTTTCATCACATTCAACCAGACAC TCTTGCAGGCGCTGCTTCGCCGTATAAGCAAGGCCGACGATTTCGCTTGA GTTGCGATCCGTGGTCACACGTATGGCCGATGCAAAAGATCCGTCCTTTC CCATATGCCATGCAGCAACATCCCCCCGTGGCAGGCGTCATCCGCCTTCC GCATGCGGAGGTGATCCGCGTTGTATACATGTTGCTTCTCGTGTAAAAAA TCCCCGAGACGCATCGGCCTTCGGCGTTTCCTCCGTTGGCTGCCGCATCT CTGCCTCGAACACGGTATTACTCTCTCATACATACGCACAAATGTCTGCT CCCGCTCCAGCCATCAAGGTAGACAAGGAGAACATGGACTACAACAAGCT TCGCGTGAAGCAGCTCAAGGGGATTCTGGCAGACCGGGGGGTGGACTGCG ATGGGTGCCTGGAGAAGTCGGATTACGTTGCGCGCTGCCAGGCCACTGAG CACCTCGAGCTCTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:377286..380300+

>mRNA_P-fluviatile_contig9.15044.1 ID=mRNA_P-fluviatile_contig9.15044.1|Name=mRNA_P-fluviatile_contig9.15044.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=984bp|location=Sequence derived from alignment at P-fluviatile_contig9:377286..380300+ (Porterinema fluviatile SAG_2381)
ATGAAGTTCCAACTGATAACTGCGATCTCAGCGATGCTCTGCGCCTTGGC
AGCAGGAGCTGCTCGAGAGGATCCCAAAGAGTGTGAAGATGAAGTTCCAA
CTGATAACTGCGATCTCAGCGATGCTCTGCGCCTTGGCAGCAGGAGCTGC
TCGAGAGGATCCCAAAGAGTGTGAAGTCTGCATTAGCGTACTGGACCAGG
TCCACGAGTCGATGAACCCCGCGGACCGCAAAAATAAGGAGAAGATCGAG
TCGGCCATCGATGCCTTCTGCGGCCAACGCCTTTCCTCGCGGGACGACAA
GATGTCTGCATTAGCGTACTGGACCAGGTCCACGAGTCGATGAACCCCGC
GGACCGCAAAAATAAGGAGAAGATCGAGTCGGCCATCGATGCCTTCTGCG
GCCAACGCCTTTCCTCGCGGGACGACAAGATGTGCTATTACTTCTTGCCG
ATTAAGAAGACAATCTCGCAACCTTTCTCGACGGGCATGCCGAAGTTGAA
GGTTTGCCAGCGGCTCAAGAAGTCCAACGCTGAAATTTGCGAGATCAAAT
ACCTGCTATTACTTCTTGCCGATTAAGAAGACAATCTCGCAACCTTTCTC
GACGGGCATGCCGAAGTTGAAGGTTTGCCAGCGGCTCAAGAAGTCCAACG
CTGAAATTTGCGAGATCAAATACCCCATCAAGGTAGACAAGGAGAACATG
GACTACAACAAGCTTCGCGTGAAGCAGCTCAAGGGGATTCTGGCAGACCG
GGGGGTGGACTGCGATGGGTGCCTGGAGAAGTCGGATTACGTTGCGCGCT
GCCAGGCCACTGAGCACCTCGAGCTCTGACCATCAAGGTAGACAAGGAGA
ACATGGACTACAACAAGCTTCGCGTGAAGCAGCTCAAGGGGATTCTGGCA
GACCGGGGGGTGGACTGCGATGGGTGCCTGGAGAAGTCGGATTACGTTGC
GCGCTGCCAGGCCACTGAGCACCTCGAGCTCTGA
back to top