mRNA_P-fluviatile_contig9.15026.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15026.1
Unique NamemRNA_P-fluviatile_contig9.15026.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15026.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.930e-18
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 QMTFVQSMIVIFAGGKSGLSAAVTGIMLIITAVLRPLLPVIASGHVSAALTVVTSLRFLTVIRMVDVTRPSNLLLFG 231
            Q  FVQSMI++FAGGK+GLSA VTG +L++T V+ PLLP++A  HVS ALTVV SLRF TVI+M+DV  P NLL+FG
Sbjct:  295 QAAFVQSMILVFAGGKTGLSAVVTGALLLMTTVMWPLLPLLAPAHVSGALTVVISLRFFTVIKMIDVNEPRNLLMFG 371
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T1_ECTSI2.930e-1866.23Putative transporter n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:240382..243220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1617
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15026.1prot_P-fluviatile_contig9.15026.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 240385..242419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.6177936-UTR-P-fluviatile_contig9:240381..2403841622817306.6177936-UTR-P-fluviatile_contig9:240381..240384Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 240382..240384 +
1693572005.9251065-UTR-P-fluviatile_contig9:240381..2403841693572005.9251065-UTR-P-fluviatile_contig9:240381..240384Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 240382..240384 +
1622817306.6763551-UTR-P-fluviatile_contig9:242419..2432201622817306.6763551-UTR-P-fluviatile_contig9:242419..243220Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 242420..243220 +
1693572007.150392-UTR-P-fluviatile_contig9:242419..2432201693572007.150392-UTR-P-fluviatile_contig9:242419..243220Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 242420..243220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.628299-CDS-P-fluviatile_contig9:240384..2404541622817306.628299-CDS-P-fluviatile_contig9:240384..240454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 240385..240454 +
1693572005.9347737-CDS-P-fluviatile_contig9:240384..2404541693572005.9347737-CDS-P-fluviatile_contig9:240384..240454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 240385..240454 +
1622817306.638945-CDS-P-fluviatile_contig9:241004..2411011622817306.638945-CDS-P-fluviatile_contig9:241004..241101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241005..241101 +
1693572005.943717-CDS-P-fluviatile_contig9:241004..2411011693572005.943717-CDS-P-fluviatile_contig9:241004..241101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241005..241101 +
1622817306.6506288-CDS-P-fluviatile_contig9:241441..2415001622817306.6506288-CDS-P-fluviatile_contig9:241441..241500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241442..241500 +
1693572005.953489-CDS-P-fluviatile_contig9:241441..2415001693572005.953489-CDS-P-fluviatile_contig9:241441..241500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241442..241500 +
1622817306.6644201-CDS-P-fluviatile_contig9:241832..2424191622817306.6644201-CDS-P-fluviatile_contig9:241832..242419Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241833..242419 +
1693572005.9646897-CDS-P-fluviatile_contig9:241832..2424191693572005.9646897-CDS-P-fluviatile_contig9:241832..242419Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 241833..242419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15026.1

>prot_P-fluviatile_contig9.15026.1 ID=prot_P-fluviatile_contig9.15026.1|Name=mRNA_P-fluviatile_contig9.15026.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=271bp
MTFVQSMIVIFAGGKSGLSAAVTGIMLIITAVLRPLLPVIASGHVSAALT
VVTSLRFLTVIRMVDVTRPSNLLLFGIPLVLVPFSSDFMDPLCIATVLAF
LCELGDVYLWSSRNFRSSNGKVAVSDDNGHGVQPECEAGELSGKDITATT
QLSGSSRLTHKVTPSFSAPATPFRERRARRNTENDLFRLTNSFRRNIRWS
VELTAGQGSVATSSTWNLPEQGGAHQRSSSYSLGTTPTVRPASLPLGLAL
AAALQLVFSAMKSRSQDGNY*
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mRNA from alignment at P-fluviatile_contig9:240382..243220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15026.1 ID=mRNA_P-fluviatile_contig9.15026.1|Name=mRNA_P-fluviatile_contig9.15026.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2839bp|location=Sequence derived from alignment at P-fluviatile_contig9:240382..243220+ (Porterinema fluviatile SAG_2381)
CAGATGACGTTCGTGCAGTCCATGATTGTCATCTTTGCGGGGGGAAAGTC
GGGGCTGAGTGCTGCTGTCACAGGTAATAGGTGTGCGTCCCTCAAAACTT
TGTTTTCGTGCCGGCTACTTTGTAGGATATTGTTGGTTCGGTCTGGTAGA
AGCGATCTACCGATCATTCATAAAATGATGCTTCGACTTCGCTCCCGCGT
TCACCGGAGAACAGTACCTTAGTCTGTTCCAACTTTGCAAGAATGGAGGG
GGGGATGTGAATCATAGCTTGCAGCGTTTGGGGGCCGGGGTAAACGAGAC
GGACCAGACCGCGAGTTAATCTGTGCCATAGGGTGTGGGCTGAAGAAAGA
GCCGAAAATGCCATGTGCCAGCCTCGTGCCAGAATGTTTTTCTTTAGCCA
AAGCCTACGGAAAGGAATTTTTCATCAACTTATAACAGGGCTGGTCGCGA
CTACGCAAAACGTGTCTGAATTTCCGACGCTGCAGGACATCTCCACATAC
AGTCATCGGTCGATCTAACTGGACGCAATCGTGACAGCTATGGAACTGAA
TGCACAAAGTAGGCGCGGATCGAGTTAACTACGATGTTGCAACAAAATTG
TGTATACCGCCCGCTCTCCGTAGGGATCATGCTTATCATCACTGCAGTGC
TACGGCCGCTGCTTCCTGTCATTGCATCGGGGCACGTCTCGGCAGCGCTG
ACGGTAGTGACCAGCTTAAGGTGTGTATGTTTCCAGCACGCATATCTGCT
TAAATCCGCACTCCCTGGCTGGTTTCGTTTGAAAAATGCTGGTGTGGCTT
CCTCCTCGACAGCGATTTATGTGTACTTTGTAGCTCAAGTTGCATGTACG
TCTTCCCCGTTGGGGTCATTGTAGAGGACAGCAATAGAGTTGCCGTTTTT
CGGCATGCATTCTGTTGTCTTGTCAAGGATTGTACATACGCGGTAGCCTA
TCCCCCGACTGCAGCGTTTCTCTCCTGATACGGCACGGTGTTCGTTCGAT
TACGCGATCAATCCTGCTTCCCGTGATTTGGAAAAAACTGCGTTCGTGTG
TTCGGCAAAGGTTTTTGACTGTGATACGGATGGTCGATGTCACGCGGCCA
AGCAATCTTCTACTATTCGGTGAGAGCAAATAAAGAGCAAATCACTGGGT
GACGGTGAGGCCATTTTTCGACTTGCAGCTGTTGGGAATAGTGAAGTCTT
TCGGGCCTTGCGGTTCTCAAGTCGCAAACGCTGCGTCAGCATCAAGGCAA
CGCACCCTATACTTTGACCTGCTAGCGTACTCGATAGAGCCAAAATTTGC
GTTCGCGACTCCTGTGCGTGCTCCTTGCACCATTTATGGCACAACGATAG
ACACCCGATATGAGCAACTCATCGTTGTCGAACTCATCGCAAGGATCAGG
AAACGGCGAGAGTTGACGCCGTCCCGCGCACGTTGCCAATCAAACCTGCA
GGCATTCCACTCGTGCTGGTGCCGTTCTCTTCAGACTTCATGGACCCTCT
GTGCATCGCCACGGTCCTTGCCTTTCTCTGTGAACTCGGCGATGTGTACC
TGTGGAGCTCACGTAATTTTCGCAGCAGCAACGGCAAAGTGGCTGTCTCC
GATGACAACGGACATGGCGTGCAGCCTGAGTGCGAAGCGGGTGAACTTAG
TGGAAAGGACATCACTGCCACCACGCAGCTTTCTGGCTCATCACGGCTCA
CCCACAAAGTAACTCCGAGTTTTTCCGCTCCAGCGACACCGTTTCGCGAG
CGTCGCGCCAGACGTAACACCGAAAATGATCTCTTCCGCCTGACAAATTC
CTTTCGCCGCAACATCCGGTGGAGTGTTGAACTTACTGCTGGCCAAGGCT
CCGTAGCAACTTCTTCTACATGGAACCTGCCTGAACAAGGAGGGGCTCAT
CAACGGTCTTCTAGCTACAGCCTGGGGACCACGCCGACCGTCCGCCCGGC
TTCGTTGCCCTTGGGGCTTGCTCTTGCTGCTGCGCTACAGCTGGTGTTCT
CGGCGATGAAAAGCCGTTCACAAGACGGAAATTATTAACGATGCATGTGA
GGATCAAAGTCGTGGACTCTGTTCTACTCTATGGATGTTGGACTCGGGTT
TGTTGTTGCGGAATGCTTTTTTCATGCACGTTGAACCGTAGTGTAAGACG
TATGAATTCGATTTTTTTGTCATCATCCTATGGCACGTGAAGGCCTTCAG
ACCACGACAAACCAAACGTGATATGTGATAGATACAGTGGGGAGGACTAC
AGGCAATCTACATAAATGGCGTGTCGTATTATGGCAGGTCTCTTCAGCAG
CCGCCGCTGTGATGCTTCTCCTACCGCACATGGGGATGGATCTACTATTA
ATACCAACGATGGAACAGATCGCCCCTCTGCGAGATGCATACACCTGCAC
TATGTGCAGTTCGATCTGCCTCCGGATCTGCCTCCGGAGCGGGCAGAGCG
AACGCTGTACGGAGACGAAGTCGAGTTCGGGGACTTTCGATGCACTGCTC
TTCACCGCCAGAAAAAATGTAATAGTAATGGATGGACAAGCCGATGAGCT
GGTGGCGAACTTTGACGAATGAAGCAAAGGATGGGCAGCATGCGGGGCGT
ACGCCGATGTTTGTATTGTACACCAAGCTGTCGATCGAGACTGGGAGCGC
GATTGTGAGAGAAGGGAGGTGAAGGATTGAAGCCTTGAACAGGCATCGAT
CCCACTTATCGACGGGCACAACATGTGTGCAAGAATATGGTTGCTTCAAT
CTGGCGCGCGGTGGGGCAGGAGGGCAGTATGGCTCGTCATATTCTGGACG
GATCTCCGACCGTCAAGGATCCGCGCAATCGGCTCGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:240382..243220+

>mRNA_P-fluviatile_contig9.15026.1 ID=mRNA_P-fluviatile_contig9.15026.1|Name=mRNA_P-fluviatile_contig9.15026.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1626bp|location=Sequence derived from alignment at P-fluviatile_contig9:240382..243220+ (Porterinema fluviatile SAG_2381)
ATGACGTTCGTGCAGTCCATGATTGTCATCTTTGCGGGGGGAAAGTCGGG
GCTGAGTGCTGCTGTCACAGATGACGTTCGTGCAGTCCATGATTGTCATC
TTTGCGGGGGGAAAGTCGGGGCTGAGTGCTGCTGTCACAGGGATCATGCT
TATCATCACTGCAGTGCTACGGCCGCTGCTTCCTGTCATTGCATCGGGGC
ACGTCTCGGCAGCGCTGACGGTAGTGACCAGCTTAAGGGATCATGCTTAT
CATCACTGCAGTGCTACGGCCGCTGCTTCCTGTCATTGCATCGGGGCACG
TCTCGGCAGCGCTGACGGTAGTGACCAGCTTAAGGTTTTTGACTGTGATA
CGGATGGTCGATGTCACGCGGCCAAGCAATCTTCTACTATTCGGTTTTTG
ACTGTGATACGGATGGTCGATGTCACGCGGCCAAGCAATCTTCTACTATT
CGGCATTCCACTCGTGCTGGTGCCGTTCTCTTCAGACTTCATGGACCCTC
TGTGCATCGCCACGGTCCTTGCCTTTCTCTGTGAACTCGGCGATGTGTAC
CTGTGGAGCTCACGTAATTTTCGCAGCAGCAACGGCAAAGTGGCTGTCTC
CGATGACAACGGACATGGCGTGCAGCCTGAGTGCGAAGCGGGTGAACTTA
GTGGAAAGGACATCACTGCCACCACGCAGCTTTCTGGCTCATCACGGCTC
ACCCACAAAGTAACTCCGAGTTTTTCCGCTCCAGCGACACCGTTTCGCGA
GCGTCGCGCCAGACGTAACACCGAAAATGATCTCTTCCGCCTGACAAATT
CCTTTCGCCGCAACATCCGGTGGAGTGTTGAACTTACTGCTGGCCAAGGC
TCCGTAGCAACTTCTTCTACATGGAACCTGCCTGAACAAGGAGGGGCTCA
TCAACGGTCTTCTAGCTACAGCCTGGGGACCACGCCGACCGTCCGCCCGG
CTTCGTTGCCCTTGGGGCTTGCTCTTGCTGCTGCGCTACAGCTGGTGTTC
TCGGCGATGAAAAGCCGTTCACAAGACGGAAATTATTAAGCATTCCACTC
GTGCTGGTGCCGTTCTCTTCAGACTTCATGGACCCTCTGTGCATCGCCAC
GGTCCTTGCCTTTCTCTGTGAACTCGGCGATGTGTACCTGTGGAGCTCAC
GTAATTTTCGCAGCAGCAACGGCAAAGTGGCTGTCTCCGATGACAACGGA
CATGGCGTGCAGCCTGAGTGCGAAGCGGGTGAACTTAGTGGAAAGGACAT
CACTGCCACCACGCAGCTTTCTGGCTCATCACGGCTCACCCACAAAGTAA
CTCCGAGTTTTTCCGCTCCAGCGACACCGTTTCGCGAGCGTCGCGCCAGA
CGTAACACCGAAAATGATCTCTTCCGCCTGACAAATTCCTTTCGCCGCAA
CATCCGGTGGAGTGTTGAACTTACTGCTGGCCAAGGCTCCGTAGCAACTT
CTTCTACATGGAACCTGCCTGAACAAGGAGGGGCTCATCAACGGTCTTCT
AGCTACAGCCTGGGGACCACGCCGACCGTCCGCCCGGCTTCGTTGCCCTT
GGGGCTTGCTCTTGCTGCTGCGCTACAGCTGGTGTTCTCGGCGATGAAAA
GCCGTTCACAAGACGGAAATTATTAA
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