mRNA_P-fluviatile_contig9.15005.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig9.15005.1 vs. uniprot
Match: D7FPF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF4_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.960e-38 Identity = 118/329 (35.87%), Postives = 170/329 (51.67%), Query Frame = 2
Query: 1124 PLSQAQLSPATEKHQQKLSIVEPRGTRDTQPRSAEVQCSGPPIDQAVQTSALLLPRRSITVENRILEAK--WPAKALVSRLDRGIHFETGASVEVETQQQQANETASTEPGHS-----------RAVQMHVRARLGGMQDVNRGQQPTIWAVTNGEDSSANCPVIMLPLGREGDEVGGA-----RRYLRVTDFSAERMCKRQNDIRSWHRGHKDRSADVGERE----------------------DGEEXXXXXXXEVRWRANHSD-LWESLGSLGERLAGMDGRFEELDKEICNDREVIESYQKAAQDEADMAARDLAVVWAGRARLP 1987
P ++ S T+++QQ+ + + T +T+ RS VQCSGPP+DQ VQTSAL LPR+S +R + + P K+ V + G ET +++A+ ST G + R +HVR L G++D +RGQQ IW+V NG D A PV+MLPL D A RR+L+V DF+ ++ +++ G +D A + + E D + + R D LWESLGSLGERLA + GRF++LD+EIC+DREVIE YQ+ AQ+EA++AARDL + R+ P
Sbjct: 20 PPARVDPSTDTQEYQQRAAATPRKKTGNTETRSEGVQCSGPPVDQGVQTSALRLPRKSGASTHRTIHPRPLSPTKSSVMSSPEAQVNQYGE----ETYREKASRGLSTPAGGAHEPARVGIALEREAHIHVRVGLEGVRDADRGQQRAIWSVANGGDPGAPGPVMMLPLELGHDRRNDASNRTVRRFLKVIDFT-----EKPHEV-----GDRDTVASIPQSEHTTSPVHVQGDVDNGVVDPILMDHRDSRDKSERRGQGRTGRLDPLWESLGSLGERLAVVGGRFDQLDQEICHDREVIEGYQREAQEEAELAARDLLDIRTRRSLPP 334
BLAST of mRNA_P-fluviatile_contig9.15005.1 vs. uniprot
Match: A0A6H5JR65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR65_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.210e-25 Identity = 83/205 (40.49%), Postives = 114/205 (55.61%), Query Frame = 2
Query: 1454 SRAVQMHVRARLGGMQDVNRGQQPTIWAVTNGEDSSANCPVIMLPLGREGDEVGGA-----RRYLRVTDFS-AERMCKRQNDIRSWHRG-HKDRSADV-GEREDGEEXXXXXXXEVRWRANHSD------------LWESLGSLGERLAGMDGRFEELDKEICNDREVIESYQKAAQDEADMAARDLAVVWAGRA----RLPGNI 1996
+R MHVR L G++D +RGQQ IW V +G D SA PV+MLPL D A RR+L+VTDF+ +N + S + H V G+ ++G + R+ + S+ LWE LGSLGERLA + GR ++LD+EIC+DREVIE YQ+ AQ+EA++AARDL + R+ R PG+I
Sbjct: 135 ARKAHMHVRGGLEGLRDADRGQQRAIWGVASGGDPSAPGPVVMLPLELGQDWRNDASNRTVRRFLKVTDFTEGSHEVGDRNTVASVSQSKHTTSPVHVQGDVDNG--LVDPILMDHRFSRDESEGRGQGRTGRLDPLWEGLGSLGERLADVGGRLDQLDQEICHDREVIEGYQREAQEEAELAARDLLDIRTHRSLPPTRSPGSI 337 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig9.15005.1 >prot_P-fluviatile_contig9.15005.1 ID=prot_P-fluviatile_contig9.15005.1|Name=mRNA_P-fluviatile_contig9.15005.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=781bp MPRKAGARSTWGDPIKLGIDPEELLVLPATLRCEQITAPRRSDLFLALRQback to top mRNA from alignment at P-fluviatile_contig9:86549..92716- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig9.15005.1 ID=mRNA_P-fluviatile_contig9.15005.1|Name=mRNA_P-fluviatile_contig9.15005.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6168bp|location=Sequence derived from alignment at P-fluviatile_contig9:86549..92716- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig9:86549..92716- >mRNA_P-fluviatile_contig9.15005.1 ID=mRNA_P-fluviatile_contig9.15005.1|Name=mRNA_P-fluviatile_contig9.15005.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4686bp|location=Sequence derived from alignment at P-fluviatile_contig9:86549..92716- (Porterinema fluviatile SAG_2381)back to top |