mRNA_P-fluviatile_contig9.15063.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15063.1
Unique NamemRNA_P-fluviatile_contig9.15063.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:612653..613251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15063.1prot_P-fluviatile_contig9.15063.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 612697..613098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.8013666-UTR-P-fluviatile_contig9:612652..6126961622817302.8013666-UTR-P-fluviatile_contig9:612652..612696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 612653..612696 +
1693571999.4983678-UTR-P-fluviatile_contig9:612652..6126961693571999.4983678-UTR-P-fluviatile_contig9:612652..612696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 612653..612696 +
1622817302.823449-UTR-P-fluviatile_contig9:613098..6132511622817302.823449-UTR-P-fluviatile_contig9:613098..613251Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 613099..613251 +
1693571999.539396-UTR-P-fluviatile_contig9:613098..6132511693571999.539396-UTR-P-fluviatile_contig9:613098..613251Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 613099..613251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.8133974-CDS-P-fluviatile_contig9:612696..6130981622817302.8133974-CDS-P-fluviatile_contig9:612696..613098Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 612697..613098 +
1693571999.5164864-CDS-P-fluviatile_contig9:612696..6130981693571999.5164864-CDS-P-fluviatile_contig9:612696..613098Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 612697..613098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15063.1

>prot_P-fluviatile_contig9.15063.1 ID=prot_P-fluviatile_contig9.15063.1|Name=mRNA_P-fluviatile_contig9.15063.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
MFAERTQQPCPATERTQEAGKNTPSEKRRPKCIRTDAIVISFAMDTYNFL
FCPATSYAGLISSSNTGCNLHRNPPTGQITGIDEALHASINSLPPRENMA
DAGALHGAQSNILRMADLDASANWEVHGETVSA*
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mRNA from alignment at P-fluviatile_contig9:612653..613251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15063.1 ID=mRNA_P-fluviatile_contig9.15063.1|Name=mRNA_P-fluviatile_contig9.15063.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=599bp|location=Sequence derived from alignment at P-fluviatile_contig9:612653..613251+ (Porterinema fluviatile SAG_2381)
CACCCGTGTAAAGCGACAATGTGGTTTCTATAGTGTTCGTCGGCATGTTT
GCCGAGCGCACTCAGCAGCCATGTCCGGCGACCGAGCGTACCCAAGAAGC
GGGAAAAAATACACCAAGCGAAAAACGCAGACCCAAGTGTATCAGGACCG
ATGCGATCGTCATTTCATTCGCTATGGACACATACAATTTCCTCTTCTGC
CCTGCTACTTCATATGCAGGTCTAATATCGTCCTCCAATACCGGATGCAA
CCTACACAGGAATCCACCCACTGGTCAAATTACCGGCATCGATGAAGCTC
TCCACGCATCTATAAATTCACTCCCACCAAGGGAAAACATGGCAGATGCG
GGTGCACTCCACGGAGCGCAATCAAATATCCTGCGCATGGCTGATCTTGA
CGCATCCGCAAACTGGGAGGTCCACGGGGAGACAGTCTCTGCATAGCCAC
GGCCATGACTCCTAAGGAAGTGCCCTTTCGCACTCCCTGCGCTTGGTCAA
CTGCTGATCGGCAGCCAGATGCGCGCAAAAACAACCACCACGGCTGAGAC
CGTGCCCTGGTGTGAGGAACACTACAATACGCACCTTCTTGGCGATGGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:612653..613251+

>mRNA_P-fluviatile_contig9.15063.1 ID=mRNA_P-fluviatile_contig9.15063.1|Name=mRNA_P-fluviatile_contig9.15063.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig9:612653..613251+ (Porterinema fluviatile SAG_2381)
ATGTTTGCCGAGCGCACTCAGCAGCCATGTCCGGCGACCGAGCGTACCCA
AGAAGCGGGAAAAAATACACCAAGCGAAAAACGCAGACCCAAGTGTATCA
GGACCGATGCGATCGTCATTTCATTCGCTATGGACACATACAATTTCCTC
TTCTGCCCTGCTACTTCATATGCAGGTCTAATATCGTCCTCCAATACCGG
ATGCAACCTACACAGGAATCCACCCACTGGTCAAATTACCGGCATCGATG
AAGCTCTCCACGCATCTATAAATTCACTCCCACCAAGGGAAAACATGGCA
GATGCGGGTGCACTCCACGGAGCGCAATCAAATATCCTGCGCATGGCTGA
TCTTGACGCATCCGCAAACTGGGAGGTCCACGGGGAGACAGTCTCTGCAT
AGATGTTTGCCGAGCGCACTCAGCAGCCATGTCCGGCGACCGAGCGTACC
CAAGAAGCGGGAAAAAATACACCAAGCGAAAAACGCAGACCCAAGTGTAT
CAGGACCGATGCGATCGTCATTTCATTCGCTATGGACACATACAATTTCC
TCTTCTGCCCTGCTACTTCATATGCAGGTCTAATATCGTCCTCCAATACC
GGATGCAACCTACACAGGAATCCACCCACTGGTCAAATTACCGGCATCGA
TGAAGCTCTCCACGCATCTATAAATTCACTCCCACCAAGGGAAAACATGG
CAGATGCGGGTGCACTCCACGGAGCGCAATCAAATATCCTGCGCATGGCT
GATCTTGACGCATCCGCAAACTGGGAGGTCCACGGGGAGACAGTCTCTGC
ATAG
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