mRNA_P-fluviatile_contig9.15013.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15013.1
Unique NamemRNA_P-fluviatile_contig9.15013.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:142301..142829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15013.1prot_P-fluviatile_contig9.15013.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 142441..142743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.6001978-UTR-P-fluviatile_contig9:142300..1424401622817302.6001978-UTR-P-fluviatile_contig9:142300..142440Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 142301..142440 +
1693571999.361581-UTR-P-fluviatile_contig9:142300..1424401693571999.361581-UTR-P-fluviatile_contig9:142300..142440Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 142301..142440 +
1622817302.62697-UTR-P-fluviatile_contig9:142743..1428291622817302.62697-UTR-P-fluviatile_contig9:142743..142829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 142744..142829 +
1693571999.391129-UTR-P-fluviatile_contig9:142743..1428291693571999.391129-UTR-P-fluviatile_contig9:142743..142829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 142744..142829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.616102-CDS-P-fluviatile_contig9:142440..1427431622817302.616102-CDS-P-fluviatile_contig9:142440..142743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 142441..142743 +
1693571999.3758755-CDS-P-fluviatile_contig9:142440..1427431693571999.3758755-CDS-P-fluviatile_contig9:142440..142743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 142441..142743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15013.1

>prot_P-fluviatile_contig9.15013.1 ID=prot_P-fluviatile_contig9.15013.1|Name=mRNA_P-fluviatile_contig9.15013.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MTSYRPTGLTSESLPRPHIACSPRSQCFDTPPFPQRLMKNESWRSRIAFA
ASIWCWPYRRGPFWLRTPNRREGQNQSRQPKGAGGVTDPTKDNSTNGGLP
*
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mRNA from alignment at P-fluviatile_contig9:142301..142829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15013.1 ID=mRNA_P-fluviatile_contig9.15013.1|Name=mRNA_P-fluviatile_contig9.15013.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=529bp|location=Sequence derived from alignment at P-fluviatile_contig9:142301..142829+ (Porterinema fluviatile SAG_2381)
GGCCTCAAGACATCATGCATCAAAGGTTGACGGTGCAACATGAAAGGGTT
TCAGTCGTTCCATGTCCCCCGGCACGAATTCACATCACATAGGGTACAAC
TTTGACGTTTCCACGCTCCTCAGCCAACTACGGCTGAGCAATGACTTCCT
ACCGACCAACGGGCCTTACATCGGAATCATTACCCCGCCCGCACATTGCT
TGCTCGCCTCGGTCTCAATGCTTTGATACTCCCCCTTTTCCCCAAAGGCT
CATGAAAAACGAGTCTTGGCGGAGCCGTATTGCATTCGCGGCGTCAATAT
GGTGCTGGCCATACCGTCGCGGCCCGTTTTGGCTCCGCACGCCGAATCGC
CGCGAGGGGCAGAACCAAAGTCGACAACCAAAGGGAGCTGGGGGGGTGAC
AGATCCGACCAAGGACAACTCAACCAACGGAGGCTTGCCATAATCGAGCT
GTTGCCGCTTCTTTCCTGCGCGACGGTCGGCGACTGGCGCTGCATGCGAC
TCCGAGAAGTGGAACCCACACCGGCGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:142301..142829+

>mRNA_P-fluviatile_contig9.15013.1 ID=mRNA_P-fluviatile_contig9.15013.1|Name=mRNA_P-fluviatile_contig9.15013.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig9:142301..142829+ (Porterinema fluviatile SAG_2381)
ATGACTTCCTACCGACCAACGGGCCTTACATCGGAATCATTACCCCGCCC
GCACATTGCTTGCTCGCCTCGGTCTCAATGCTTTGATACTCCCCCTTTTC
CCCAAAGGCTCATGAAAAACGAGTCTTGGCGGAGCCGTATTGCATTCGCG
GCGTCAATATGGTGCTGGCCATACCGTCGCGGCCCGTTTTGGCTCCGCAC
GCCGAATCGCCGCGAGGGGCAGAACCAAAGTCGACAACCAAAGGGAGCTG
GGGGGGTGACAGATCCGACCAAGGACAACTCAACCAACGGAGGCTTGCCA
TAAATGACTTCCTACCGACCAACGGGCCTTACATCGGAATCATTACCCCG
CCCGCACATTGCTTGCTCGCCTCGGTCTCAATGCTTTGATACTCCCCCTT
TTCCCCAAAGGCTCATGAAAAACGAGTCTTGGCGGAGCCGTATTGCATTC
GCGGCGTCAATATGGTGCTGGCCATACCGTCGCGGCCCGTTTTGGCTCCG
CACGCCGAATCGCCGCGAGGGGCAGAACCAAAGTCGACAACCAAAGGGAG
CTGGGGGGGTGACAGATCCGACCAAGGACAACTCAACCAACGGAGGCTTG
CCATAA
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