mRNA_P-fluviatile_contig9.15015.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15015.1
Unique NamemRNA_P-fluviatile_contig9.15015.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:145631..146959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size779
Cds size777
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.3062663-CDS-P-fluviatile_contig9:145630..1460111622817301.3062663-CDS-P-fluviatile_contig9:145630..146011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 145631..146011 -
1693571995.2492244-CDS-P-fluviatile_contig9:145630..1460111693571995.2492244-CDS-P-fluviatile_contig9:145630..146011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 145631..146011 -
1622817301.320019-CDS-P-fluviatile_contig9:146563..1469591622817301.320019-CDS-P-fluviatile_contig9:146563..146959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 146564..146959 -
1693571995.2678761-CDS-P-fluviatile_contig9:146563..1469591693571995.2678761-CDS-P-fluviatile_contig9:146563..146959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 146564..146959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15015.1prot_P-fluviatile_contig9.15015.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 145631..146959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15015.1

>prot_P-fluviatile_contig9.15015.1 ID=prot_P-fluviatile_contig9.15015.1|Name=mRNA_P-fluviatile_contig9.15015.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=259bp
MAFGTVSPPNDSFRKRARTRALQVDDEGSKPSQTTGRVGIPCTGSDTQGP
SKGFPEDLFGPAKPRARSPADKLRKTMVSTARLIPILQRSPECKSQEVIS
PTARGDYQSAAKSDAKQTESRVGIRRISSRRMGIAGLDANVKKEILLFDA
HLKSADLAAGVSEKRARNASESTSGDVVLGLGSSGGREKPAMGLADDQPG
SDGKAEQLQDAQQEVYLLQQHEPASGDFISGLDSNGGGKQPAKILVEDQP
RSSEKTEQQ
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mRNA from alignment at P-fluviatile_contig9:145631..146959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15015.1 ID=mRNA_P-fluviatile_contig9.15015.1|Name=mRNA_P-fluviatile_contig9.15015.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1329bp|location=Sequence derived from alignment at P-fluviatile_contig9:145631..146959- (Porterinema fluviatile SAG_2381)
ATGGCGTTCGGAACTGTCTCTCCTCCCAACGACTCATTCCGCAAGCGCGC
GCGGACTCGTGCGCTTCAGGTCGATGATGAAGGTAGTAAGCCTTCTCAAA
CCACTGGACGAGTAGGTATTCCCTGTACCGGCAGCGATACACAGGGACCG
TCGAAGGGCTTCCCAGAGGACCTGTTTGGTCCAGCAAAGCCTAGAGCAAG
GTCTCCTGCTGATAAATTGAGGAAAACTATGGTATCAACAGCAAGGCTGA
TTCCCATACTTCAGAGATCCCCGGAGTGCAAGTCGCAGGAGGTGATATCT
CCCACAGCGCGCGGCGATTACCAGAGCGCAGCGAAGTCGGATGCTAAACA
AACGGAGAGCAGAGTCGGAATACGCAGGATCTCGTCGAGAAGGATGGTAA
GAATGAAGAAATGTGCTGCTAGATCAGTGAATTGGCAGAATTCCTATGAC
AGCCATGTCAAACACGAAGGGCATTCTGCTTGTACGGTGCGCTGTGATAC
GCAGGATTGCTTCGCCCCACATCCAACTCAACTTTCATGCTTGCCGCTTT
GCCATTCAGTCCGAAGTTCTCGGTCAGCAAATTTTAGTACCTGGGGAAGC
GCGGTCGGTTGGGCGTTGCAGCTCTGTCAGCTTTACGCTAGGGCGAAAGT
AACAATGACGTTAAAGGGCAGCACAAGACTCCACGAATAGCTTTTTCTTG
AGCTACGTTTCAGGCCCGTCAGTAACGAACCAAAATTGCTATTCGATCTT
TTCGTATCGCAGTTGTCCTGCGTGAACCTGACTGGGCTTCCGTCCAACAT
CAAAACCGCTGGCATCGCCAGGGGGTAAAGAGGGCGGCTACACGCTCGCC
TCCGTGTATCTCCGAGAATTCCCACGTGCAACTCGTGCCAATCCCCTCAA
ACCAATCAATACATCGTCTTGGACCGATGTCATTCTGCTTTCAAACAGGG
GATCGCGGGCTTAGATGCCAACGTGAAGAAGGAAATCCTTTTGTTCGACG
CTCACCTCAAAAGCGCTGACCTAGCCGCGGGGGTGTCAGAGAAGCGGGCG
AGAAATGCGTCGGAATCCACATCCGGGGACGTTGTGCTAGGGTTGGGTAG
CAGCGGAGGACGGGAGAAGCCGGCGATGGGACTCGCGGATGACCAGCCTG
GTAGCGATGGAAAGGCAGAGCAGCTCCAGGACGCACAACAAGAAGTCTAT
CTTCTCCAGCAGCACGAACCTGCATCCGGGGATTTCATATCAGGTTTGGA
CAGCAACGGCGGAGGGAAGCAGCCGGCAAAAATCCTCGTCGAGGATCAGC
CTCGTAGTAGTGAAAAGACCGAGCAGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:145631..146959-

>mRNA_P-fluviatile_contig9.15015.1 ID=mRNA_P-fluviatile_contig9.15015.1|Name=mRNA_P-fluviatile_contig9.15015.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1554bp|location=Sequence derived from alignment at P-fluviatile_contig9:145631..146959- (Porterinema fluviatile SAG_2381)
ATGGCGTTCGGAACTGTCTCTCCTCCCAACGACTCATTCCGCAAGCGCGC
GCGGACTCGTGCGCTTCAGGTCGATGATGAAGGTAGTAAGCCTTCTCAAA
CCACTGGACGAGTAGGTATTCCCTGTACCGGCAGCGATACACAGGGACCG
TCGAAGGGCTTCCCAGAGGACCTGTTTGGTCCAGCAAAGCCTAGAGCAAG
GTCTCCTGCTGATAAATTGAGGAAAACTATGGTATCAACAGCAAGGCTGA
TTCCCATACTTCAGAGATCCCCGGAGTGCAAGTCGCAGGAGGTGATATCT
CCCACAGCGCGCGGCGATTACCAGAGCGCAGCGAAGTCGGATGCTAAACA
AACGGAGAGCAGAGTCGGAATACGCAGGATCTCGTCGAGAAGGATGATGG
CGTTCGGAACTGTCTCTCCTCCCAACGACTCATTCCGCAAGCGCGCGCGG
ACTCGTGCGCTTCAGGTCGATGATGAAGGTAGTAAGCCTTCTCAAACCAC
TGGACGAGTAGGTATTCCCTGTACCGGCAGCGATACACAGGGACCGTCGA
AGGGCTTCCCAGAGGACCTGTTTGGTCCAGCAAAGCCTAGAGCAAGGTCT
CCTGCTGATAAATTGAGGAAAACTATGGTATCAACAGCAAGGCTGATTCC
CATACTTCAGAGATCCCCGGAGTGCAAGTCGCAGGAGGTGATATCTCCCA
CAGCGCGCGGCGATTACCAGAGCGCAGCGAAGTCGGATGCTAAACAAACG
GAGAGCAGAGTCGGAATACGCAGGATCTCGTCGAGAAGGATGGGGATCGC
GGGCTTAGATGCCAACGTGAAGAAGGAAATCCTTTTGTTCGACGCTCACC
TCAAAAGCGCTGACCTAGCCGCGGGGGTGTCAGAGAAGCGGGCGAGAAAT
GCGTCGGAATCCACATCCGGGGACGTTGTGCTAGGGTTGGGTAGCAGCGG
AGGACGGGAGAAGCCGGCGATGGGACTCGCGGATGACCAGCCTGGTAGCG
ATGGAAAGGCAGAGCAGCTCCAGGACGCACAACAAGAAGTCTATCTTCTC
CAGCAGCACGAACCTGCATCCGGGGATTTCATATCAGGTTTGGACAGCAA
CGGCGGAGGGAAGCAGCCGGCAAAAATCCTCGTCGAGGATCAGCCTCGTA
GTAGTGAAAAGACCGAGCAGCAGGGGATCGCGGGCTTAGATGCCAACGTG
AAGAAGGAAATCCTTTTGTTCGACGCTCACCTCAAAAGCGCTGACCTAGC
CGCGGGGGTGTCAGAGAAGCGGGCGAGAAATGCGTCGGAATCCACATCCG
GGGACGTTGTGCTAGGGTTGGGTAGCAGCGGAGGACGGGAGAAGCCGGCG
ATGGGACTCGCGGATGACCAGCCTGGTAGCGATGGAAAGGCAGAGCAGCT
CCAGGACGCACAACAAGAAGTCTATCTTCTCCAGCAGCACGAACCTGCAT
CCGGGGATTTCATATCAGGTTTGGACAGCAACGGCGGAGGGAAGCAGCCG
GCAAAAATCCTCGTCGAGGATCAGCCTCGTAGTAGTGAAAAGACCGAGCA
GCAG
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