mRNA_P-fluviatile_contig89.14971.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14971.1
Unique NamemRNA_P-fluviatile_contig89.14971.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: K9ZWB2_9STRA (Elongation factor Tu, chloroplastic n=24 Tax=Ochrophyta TaxID=2696291 RepID=K9ZWB2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.150e-31
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MAREK++RTKPH+NIGTIGHVDHGKTTLTAAIT+ LSL GDS AKKY+DIDAAPEE+ARGITINT
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITSTLSLLGDSKAKKYDDIDAAPEEKARGITINT 65
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.150e-31
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MAREK++RTKPH+NIGTIGHVDHGKTTLTAAITA L+L G S AKKYEDIDAAPEERARGITINT
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALGGSSAAKKYEDIDAAPEERARGITINT 65
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: A0A7S2YC73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YC73_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.520e-30
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MAREK++RTKPH+NIGTIGHVDHGKTTLTAAITA L+L G + AK Y DID APEERARGITINT
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALGGTAVAKDYSDIDGAPEERARGITINT 65
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: X0XRB1_9ZZZZ (Tr-type G domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XRB1_9ZZZZ)

HSP 1 Score: 110 bits (274), Expect = 5.540e-30
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSN--AKKYEDIDAAPEERARGITINT 257
            MAREK++RTKPH+NIGTIGHVDHGKTTLTAAITA LSL GD+N  AK Y++ID APEERARGITINT
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLSL-GDTNNVAKAYDEIDGAPEERARGITINT 66
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: UPI001AEB9707 (GTP-binding protein n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AEB9707)

HSP 1 Score: 111 bits (278), Expect = 7.210e-30
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MA+EK++R+KPH NIGTIGHVDHGKTTLTAAIT  L+ SG + AKKYEDIDAAPEE+ARGITINT
Sbjct:    1 MAKEKFNRSKPHCNIGTIGHVDHGKTTLTAAITMTLAKSGGATAKKYEDIDAAPEEKARGITINT 65
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: A0A455REG3_9STRA (Elongation factor Tu n=1 Tax=Spumella sp. NIES-1846 TaxID=2490549 RepID=A0A455REG3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.190e-29
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MAREKY+RTKPHINIGTIGHVDHGKTTLTAAITA LSL G +  +KYEDIDAAPEER RGITINT
Sbjct:    1 MAREKYERTKPHINIGTIGHVDHGKTTLTAAITATLSLIGGAKLRKYEDIDAAPEERTRGITINT 65
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BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: A0A6B3ULB9_9CAUL (Elongation factor Tu (Fragment) n=1 Tax=Caulobacter sp. 17J65-9 TaxID=2709382 RepID=A0A6B3ULB9_9CAUL)

HSP 1 Score: 108 bits (271), Expect = 1.420e-29
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MA+EK++R KPH NIGTIGHVDHGKTTLTAAIT  L+ SG + AKKY++IDAAPEE+ARGITINT
Sbjct:    1 MAKEKFERNKPHCNIGTIGHVDHGKTTLTAAITMTLAKSGGATAKKYDEIDAAPEEKARGITINT 65
[Close]
BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: UPI00066C1D35 (GTP-binding protein n=1 Tax=Ralstonia solanacearum TaxID=305 RepID=UPI00066C1D35)

HSP 1 Score: 107 bits (268), Expect = 5.230e-29
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MA+EK++RTKPH+N+GTIGHVDHGKTTLTAAI  VLS      AKKY++IDAAPEE+ARGITINT
Sbjct:    1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSSKFGGEAKKYDEIDAAPEEKARGITINT 65
[Close]
BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: A0A328B4G3_9CAUL (Elongation factor Tu (Fragment) n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A328B4G3_9CAUL)

HSP 1 Score: 112 bits (279), Expect = 6.110e-29
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MA+EK++R KPH NIGTIGHVDHGKTTLTAAIT VL+ +G + AKKYEDIDAAPEE+ARGITINT
Sbjct:    1 MAKEKFERNKPHCNIGTIGHVDHGKTTLTAAITMVLAKTGGATAKKYEDIDAAPEEKARGITINT 65
[Close]
BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Match: UPI001FB86B9B (GTP-binding protein n=1 Tax=Brevundimonas terrae TaxID=363631 RepID=UPI001FB86B9B)

HSP 1 Score: 107 bits (268), Expect = 6.360e-29
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:   63 MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDIDAAPEERARGITINT 257
            MA+EK++RTKPH NIGTIGHVDHGKTTLTAAIT  L+ +G + AK Y DIDAAPEE+ARGITINT
Sbjct:    1 MAKEKFERTKPHCNIGTIGHVDHGKTTLTAAITITLAKAGGATAKAYADIDAAPEEKARGITINT 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K9ZWB2_9STRA8.150e-3186.15Elongation factor Tu, chloroplastic n=24 Tax=Ochro... [more]
A0A7S6ZPC8_9STRA8.150e-3187.69Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
A0A7S2YC73_9STRA3.520e-3081.54Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
X0XRB1_9ZZZZ5.540e-3082.09Tr-type G domain-containing protein (Fragment) n=1... [more]
UPI001AEB97077.210e-3080.00GTP-binding protein n=1 Tax=Asticcacaulis solisilv... [more]
A0A455REG3_9STRA1.190e-2986.15Elongation factor Tu n=1 Tax=Spumella sp. NIES-184... [more]
A0A6B3ULB9_9CAUL1.420e-2976.92Elongation factor Tu (Fragment) n=1 Tax=Caulobacte... [more]
UPI00066C1D355.230e-2975.38GTP-binding protein n=1 Tax=Ralstonia solanacearum... [more]
A0A328B4G3_9CAUL6.110e-2980.00Elongation factor Tu (Fragment) n=5 Tax=Alphaprote... [more]
UPI001FB86B9B6.360e-2976.92GTP-binding protein n=1 Tax=Brevundimonas terrae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:58273..58529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D1J725
Preferred nametufA
KEGG koko:K02358
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size259
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.0351553-UTR-P-fluviatile_contig89:58272..583341622817300.0351553-UTR-P-fluviatile_contig89:58272..58334Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 58273..58334 +
1693571985.3017223-UTR-P-fluviatile_contig89:58272..583341693571985.3017223-UTR-P-fluviatile_contig89:58272..58334Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 58273..58334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.0462227-CDS-P-fluviatile_contig89:58334..585291622817300.0462227-CDS-P-fluviatile_contig89:58334..58529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 58335..58529 +
1693571985.313467-CDS-P-fluviatile_contig89:58334..585291693571985.313467-CDS-P-fluviatile_contig89:58334..58529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 58335..58529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14971.1prot_P-fluviatile_contig89.14971.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 58335..58529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14971.1

>prot_P-fluviatile_contig89.14971.1 ID=prot_P-fluviatile_contig89.14971.1|Name=mRNA_P-fluviatile_contig89.14971.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
MAREKYDRTKPHINIGTIGHVDHGKTTLTAAITAVLSLSGDSNAKKYEDI
DAAPEERARGITINT
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mRNA from alignment at P-fluviatile_contig89:58273..58529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14971.1 ID=mRNA_P-fluviatile_contig89.14971.1|Name=mRNA_P-fluviatile_contig89.14971.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=257bp|location=Sequence derived from alignment at P-fluviatile_contig89:58273..58529+ (Porterinema fluviatile SAG_2381)
TTTATTAAATTTAATTAATCGCCAAAAGTAAAAGATATAAAATAAAATAA
GGAGTATATACTATGGCTCGTGAAAAATATGACCGTACGAAACCACACAT
TAACATTGGAACAATTGGACATGTAGATCATGGTAAAACTACACTAACTG
CTGCAATCACTGCTGTTTTATCATTATCAGGAGATTCAAATGCGAAAAAA
TATGAAGATATTGATGCAGCACCTGAAGAACGTGCTCGTGGAATCACAAT
CAATACA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:58273..58529+

>mRNA_P-fluviatile_contig89.14971.1 ID=mRNA_P-fluviatile_contig89.14971.1|Name=mRNA_P-fluviatile_contig89.14971.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig89:58273..58529+ (Porterinema fluviatile SAG_2381)
ATGGCTCGTGAAAAATATGACCGTACGAAACCACACATTAACATTGGAAC
AATTGGACATGTAGATCATGGTAAAACTACACTAACTGCTGCAATCACTG
CTGTTTTATCATTATCAGGAGATTCAAATGCGAAAAAATATGAAGATATT
GATGCAGCACCTGAAGAACGTGCTCGTGGAATCACAATCAATACAATGGC
TCGTGAAAAATATGACCGTACGAAACCACACATTAACATTGGAACAATTG
GACATGTAGATCATGGTAAAACTACACTAACTGCTGCAATCACTGCTGTT
TTATCATTATCAGGAGATTCAAATGCGAAAAAATATGAAGATATTGATGC
AGCACCTGAAGAACGTGCTCGTGGAATCACAATCAATACA
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