mRNA_P-fluviatile_contig89.14970.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14970.1
Unique NamemRNA_P-fluviatile_contig89.14970.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 136 bits (342), Expect = 1.360e-39
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIRVRR KI+ R KSPALK+CPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 74
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BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.920e-39
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQL+R  RKK+Q RTKSPALK+CPQRRGVCTRV+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 74
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BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A8E5XRI9_9PHAE (30S ribosomal protein S12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.820e-39
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIRV RKKIQPRTKSPALKSCPQRRGVCTRV+TI PKKPNSA+RKVARVRLTSGFEVTAYIPG+ H L
Sbjct:    1 MPTIQQLIRVPRKKIQPRTKSPALKSCPQRRGVCTRVYTIAPKKPNSAVRKVARVRLTSGFEVTAYIPGVDHTL 74
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BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 6.410e-38
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIR++RKKI  +TKSPALK CPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNL 74
[Close]
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 131 bits (330), Expect = 9.100e-38
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIR  R+KI+ +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNL 74
[Close]
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A1X9PTY6_9RHOD (30S ribosomal protein S12, chloroplastic n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1X9PTY6_9RHOD)

HSP 1 Score: 130 bits (326), Expect = 3.700e-37
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQL+R  RKKI  +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHN+
Sbjct:    1 MPTIQQLVRSERKKIDKQTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNI 74
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BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: RR12_CHLAT (30S ribosomal protein S12, chloroplastic n=10 Tax=Viridiplantae TaxID=33090 RepID=RR12_CHLAT)

HSP 1 Score: 129 bits (325), Expect = 5.100e-37
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIR +RKK++ +TKSPAL+ CPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLIRSQRKKVEKKTKSPALRGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNL 74
[Close]
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: RR12_CYAPA (Cyanelle 30S ribosomal protein S12 n=2 Tax=cellular organisms TaxID=131567 RepID=RR12_CYAPA)

HSP 1 Score: 129 bits (325), Expect = 5.250e-37
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQLIR +R KI+ +TKSPALK+CPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLIRSKRTKIEKKTKSPALKACPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNL 74
[Close]
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 129 bits (324), Expect = 7.450e-37
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQL+R  RKK   +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNL
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNL 74
[Close]
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Match: RR12_PORPU (30S ribosomal protein S12, chloroplastic n=16 Tax=Rhodophyta TaxID=2763 RepID=RR12_PORPU)

HSP 1 Score: 129 bits (323), Expect = 1.060e-36
Identity = 62/74 (83.78%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:   49 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNL 270
            MPTIQQL+R  R+KI  +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPG+GHN+
Sbjct:    1 MPTIQQLVRSERRKINKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGVGHNI 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0NH41_9CYAN1.360e-3993.2430S ribosomal protein S12 n=53 Tax=cellular organi... [more]
A0A7S6U9Z3_9STRA1.920e-3990.5430S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A8E5XRI9_9PHAE7.820e-3990.5430S ribosomal protein S12, chloroplastic n=1 Tax=I... [more]
A0A3G1IVK8_9EUKA6.410e-3887.84Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
K9TNW7_9CYAN9.100e-3887.8430S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A1X9PTY6_9RHOD3.700e-3786.4930S ribosomal protein S12, chloroplastic n=2 Tax=R... [more]
RR12_CHLAT5.100e-3785.1430S ribosomal protein S12, chloroplastic n=10 Tax=... [more]
RR12_CYAPA5.250e-3786.49Cyanelle 30S ribosomal protein S12 n=2 Tax=cellula... [more]
A0A0P8BUW8_9CYAN7.450e-3786.4930S ribosomal protein S12 n=11 Tax=cellular organi... [more]
RR12_PORPU1.060e-3683.7830S ribosomal protein S12, chloroplastic n=16 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:57345..57614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.4e-33
Seed eggNOG ortholog2880.D1J727
Preferred namerps12
KEGG koko:K02950,ko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0019538,GO:0031976,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size271
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.9888432-UTR-P-fluviatile_contig89:57344..573921622817299.9888432-UTR-P-fluviatile_contig89:57344..57392Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 57345..57392 +
1693571985.276721-UTR-P-fluviatile_contig89:57344..573921693571985.276721-UTR-P-fluviatile_contig89:57344..57392Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 57345..57392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.0025382-CDS-P-fluviatile_contig89:57392..576141622817300.0025382-CDS-P-fluviatile_contig89:57392..57614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 57393..57614 +
1693571985.2892172-CDS-P-fluviatile_contig89:57392..576141693571985.2892172-CDS-P-fluviatile_contig89:57392..57614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 57393..57614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14970.1prot_P-fluviatile_contig89.14970.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 57393..57614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14970.1

>prot_P-fluviatile_contig89.14970.1 ID=prot_P-fluviatile_contig89.14970.1|Name=mRNA_P-fluviatile_contig89.14970.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=74bp
MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNL
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mRNA from alignment at P-fluviatile_contig89:57345..57614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14970.1 ID=mRNA_P-fluviatile_contig89.14970.1|Name=mRNA_P-fluviatile_contig89.14970.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=270bp|location=Sequence derived from alignment at P-fluviatile_contig89:57345..57614+ (Porterinema fluviatile SAG_2381)
AAAACATCTAGTTGAAATTAATAAATTAATAAATATATATTTTTAAATAT
GCCCACTATACAACAACTTATTCGAGTACGTCGTAAAAAAATTCAACCTA
GAACCAAATCTCCTGCATTAAAGAGTTGTCCTCAGCGTAGAGGTGTATGT
ACTAGGGTTCATACAATTACACCAAAAAAACCTAATTCAGCGATAAGAAA
AGTTGCTCGGGTTAGATTAACTTCTGGCTTTGAGGTAACAGCATATATAC
CAGGTATTGGACATAATTTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:57345..57614+

>mRNA_P-fluviatile_contig89.14970.1 ID=mRNA_P-fluviatile_contig89.14970.1|Name=mRNA_P-fluviatile_contig89.14970.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=444bp|location=Sequence derived from alignment at P-fluviatile_contig89:57345..57614+ (Porterinema fluviatile SAG_2381)
ATGCCCACTATACAACAACTTATTCGAGTACGTCGTAAAAAAATTCAACC
TAGAACCAAATCTCCTGCATTAAAGAGTTGTCCTCAGCGTAGAGGTGTAT
GTACTAGGGTTCATACAATTACACCAAAAAAACCTAATTCAGCGATAAGA
AAAGTTGCTCGGGTTAGATTAACTTCTGGCTTTGAGGTAACAGCATATAT
ACCAGGTATTGGACATAATTTAATGCCCACTATACAACAACTTATTCGAG
TACGTCGTAAAAAAATTCAACCTAGAACCAAATCTCCTGCATTAAAGAGT
TGTCCTCAGCGTAGAGGTGTATGTACTAGGGTTCATACAATTACACCAAA
AAAACCTAATTCAGCGATAAGAAAAGTTGCTCGGGTTAGATTAACTTCTG
GCTTTGAGGTAACAGCATATATACCAGGTATTGGACATAATTTA
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