mRNA_P-fluviatile_contig89.14952.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14952.1
Unique NamemRNA_P-fluviatile_contig89.14952.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A8F0JXD3_9PHAE (Acetolactate synthase small subunit n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXD3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.210e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGLVR+ISLLTRRRF IESIT+A CERK YERITII+INQ
Sbjct:    1 MKRTISVLVEKDAGGLVRIISLLTRRRFQIESITMAACERKCYERITIIIINQ 53
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BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A344PFD2_9PHAE (Acetolactate synthase small subunit n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFD2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-20
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            M+RTISVLVEKDTGGLVR+ISLLTRRRFH++SIT++ CERK YERITI+LINQ
Sbjct:    1 MERTISVLVEKDTGGLVRIISLLTRRRFHLKSITMSTCERKCYERITIVLINQ 53
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BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A8F0F6Q2_AKKLU (Acetolactate synthase small subunit n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q2_AKKLU)

HSP 1 Score: 89.7 bits (221), Expect = 1.830e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGLVR++SLLTRRRF IESIT+A CERK YERITII+INQ
Sbjct:    1 MKRTISVLVEKDAGGLVRIVSLLTRRRFQIESITMAACERKCYERITIIVINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A0R6LUP2_UNDPI (Acetolactate synthase small subunit n=5 Tax=Alariaceae TaxID=2887 RepID=A0A0R6LUP2_UNDPI)

HSP 1 Score: 89.7 bits (221), Expect = 2.000e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGLVR+ISLLTRRRF IESIT+A CERK YERITI++INQ
Sbjct:    1 MKRTISVLVEKDAGGLVRIISLLTRRRFQIESITMASCERKCYERITIVVINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A516IDP2_9PHAE (Acetolactate synthase small subunit n=2 Tax=Lessonia TaxID=105411 RepID=A0A516IDP2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.710e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGLVR++SLLTRRRF IESIT+A CERK YERITI++INQ
Sbjct:    1 MKRTISVLVEKDAGGLVRIVSLLTRRRFQIESITMAACERKCYERITIVVINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A0S0G9Z6_COSCS (Acetolactate synthase small subunit n=19 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9Z6_COSCS)

HSP 1 Score: 89.4 bits (220), Expect = 2.830e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGLVR++SLLTRRRF IESIT+A CERK YERITI++INQ
Sbjct:    1 MKRTISVLVEKDAGGLVRIVSLLTRRRFQIESITMAACERKCYERITIVVINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A8F0F7F2_9PHAE (Acetolactate synthase small subunit n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7F2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.940e-20
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKRTISVLVEKD GGL R+ISLLTRRRF IESIT+A CERK YERITI++INQ
Sbjct:    1 MKRTISVLVEKDAGGLARIISLLTRRRFQIESITMAACERKCYERITIVVINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A1I9LVF0_9PHAE (Acetolactate synthase small subunit n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.830e-20
Identity = 40/53 (75.47%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            M+RTISVL+EKDTGGL R+IS+LTRRRFH++SIT++ CERK YER+TI+LINQ
Sbjct:    1 MERTISVLIEKDTGGLARIISILTRRRFHLKSITMSSCERKGYERLTIVLINQ 53
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A1L2F1T4_9PHAE (Acetolactate synthase small subunit n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1T4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.910e-19
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILIN 263
            M RTISVLVEKD+GGL+R+ISLLTRR+F IESITIAGCERK YER+TIIL N
Sbjct:    1 MNRTISVLVEKDSGGLLRIISLLTRRKFQIESITIAGCERKYYERLTIILTN 52
[Close]
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Match: A0A8F0F9Y8_9PHAE (Acetolactate synthase small subunit n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Y8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.010e-19
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 3 
Query:  108 MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIILINQ 266
            MKR ISVLVEKD GGLVR+ISLLTRRRF IESIT+A CERK YERITI++INQ
Sbjct:    1 MKRIISVLVEKDAGGLVRIISLLTRRRFQIESITMAQCERKCYERITIVVINQ 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JXD3_9PHAE9.210e-2186.79Acetolactate synthase small subunit n=1 Tax=Pseudo... [more]
A0A344PFD2_9PHAE1.240e-2083.02Acetolactate synthase small subunit n=4 Tax=Scytos... [more]
A0A8F0F6Q2_AKKLU1.830e-2084.91Acetolactate synthase small subunit n=1 Tax=Akkesi... [more]
A0A0R6LUP2_UNDPI2.000e-2084.91Acetolactate synthase small subunit n=5 Tax=Alaria... [more]
A0A516IDP2_9PHAE2.710e-2083.02Acetolactate synthase small subunit n=2 Tax=Lesson... [more]
A0A0S0G9Z6_COSCS2.830e-2083.02Acetolactate synthase small subunit n=19 Tax=Lamin... [more]
A0A8F0F7F2_9PHAE7.940e-2083.02Acetolactate synthase small subunit n=3 Tax=Lamina... [more]
A0A1I9LVF0_9PHAE9.830e-2075.47Acetolactate synthase small subunit n=2 Tax=Pleuro... [more]
A0A1L2F1T4_9PHAE2.910e-1982.69Acetolactate synthase small subunit n=14 Tax=Sarga... [more]
A0A8F0F9Y8_9PHAE3.010e-1983.02Acetolactate synthase small subunit n=1 Tax=Chorda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:24000..24265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog2880.D1J7C0
Preferred nameilvH
KEGG rclassRC00027,RC00106,RC01192,RC02744,RC02893
KEGG koko:K01653,ko:K14376
KEGG ReactionR00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko03015,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230,map03015
KEGG ModuleM00019,M00570
GOsGO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006551,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043621,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234
EggNOG free text desc.acetolactate synthase activity
EggNOG OGsCOG0440@1,KOG2663@2759
EC2.2.1.6,2.7.7.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size268
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.095466-UTR-P-fluviatile_contig89:23999..241061622817299.095466-UTR-P-fluviatile_contig89:23999..24106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 24000..24106 +
1693571980.5723138-UTR-P-fluviatile_contig89:23999..241061693571980.5723138-UTR-P-fluviatile_contig89:23999..24106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 24000..24106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.1064074-CDS-P-fluviatile_contig89:24106..242651622817299.1064074-CDS-P-fluviatile_contig89:24106..24265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 24107..24265 +
1693571984.1464818-CDS-P-fluviatile_contig89:24106..242651693571984.1464818-CDS-P-fluviatile_contig89:24106..24265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 24107..24265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14952.1prot_P-fluviatile_contig89.14952.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 24107..24265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14952.1

>prot_P-fluviatile_contig89.14952.1 ID=prot_P-fluviatile_contig89.14952.1|Name=mRNA_P-fluviatile_contig89.14952.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=53bp
MKRTISVLVEKDTGGLVRVISLLTRRRFHIESITIAGCERKSYERITIIL
INQ
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mRNA from alignment at P-fluviatile_contig89:24000..24265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14952.1 ID=mRNA_P-fluviatile_contig89.14952.1|Name=mRNA_P-fluviatile_contig89.14952.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=266bp|location=Sequence derived from alignment at P-fluviatile_contig89:24000..24265+ (Porterinema fluviatile SAG_2381)
CAACAATACAAGAAAATTGCAAACTCATAATTTTTTTTTATAATCTAGTT
TCAATCTAAAATTGAGACTAGGTTAAGATAGAATTAAAGATAATATTTAA
AATAATTATGAAAAGAACTATTTCAGTTTTAGTTGAGAAAGATACAGGAG
GATTGGTTCGGGTTATAAGTTTATTAACCAGAAGAAGATTTCATATTGAA
AGTATTACAATAGCAGGATGTGAAAGAAAGAGCTACGAAAGAATAACAAT
TATACTAATAAATCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:24000..24265+

>mRNA_P-fluviatile_contig89.14952.1 ID=mRNA_P-fluviatile_contig89.14952.1|Name=mRNA_P-fluviatile_contig89.14952.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=318bp|location=Sequence derived from alignment at P-fluviatile_contig89:24000..24265+ (Porterinema fluviatile SAG_2381)
ATGAAAAGAACTATTTCAGTTTTAGTTGAGAAAGATACAGGAGGATTGGT
TCGGGTTATAAGTTTATTAACCAGAAGAAGATTTCATATTGAAAGTATTA
CAATAGCAGGATGTGAAAGAAAGAGCTACGAAAGAATAACAATTATACTA
ATAAATCAAATGAAAAGAACTATTTCAGTTTTAGTTGAGAAAGATACAGG
AGGATTGGTTCGGGTTATAAGTTTATTAACCAGAAGAAGATTTCATATTG
AAAGTATTACAATAGCAGGATGTGAAAGAAAGAGCTACGAAAGAATAACA
ATTATACTAATAAATCAA
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