mRNA_P-fluviatile_contig86.14914.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig86.14914.1
Unique NamemRNA_P-fluviatile_contig86.14914.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig86.14914.1 vs. uniprot
Match: Q8QNB2_ESV1K (EsV-1-175 n=2 Tax=root TaxID=1 RepID=Q8QNB2_ESV1K)

HSP 1 Score: 392 bits (1008), Expect = 3.050e-133
Identity = 200/344 (58.14%), Postives = 255/344 (74.13%), Query Frame = 1 
Query:   16 MPSRFIVEQAELLHRARDPEAVLENIRKKYSTSSFCSQMSRVKAEWYKFNDRHEDFAAIMIAGYERLKKSDVS--RRALKELKHYMRDDVGVQMRKRRSLRTPDGLTGDEDVDFFIASTPVLPDYMSGYQLSPEDRIVSSENSRKSLEARSMDCVIVEDADELLERCKKTIKELREDPFFIAACLSVVCGRRSVEILKTGEF-RGVEGRDH-ACLFSGAAKKKTVCANAKCCEIPLLMRSKHVIAALKHVRDLLPCAALSNSQINSKYSHKLGDAAKILMNNLGVRFHDLRCIYGMVSFKVYEHGGSINIWLKKSLLHETLDTSVFYSRCRVEKCETRLGRWDF 1035
            MPS+FI+EQAELLHR +D + VL+N+R KY+ SSF SQMSRVK EW KF +RHE F  IM   Y     +D +  RRA+KEL+ YM+DD+ +QM+K R+ ++P GLTGDE +D  +    +LPDYM  Y+L+  DR  SSE S+KSLE RSMDCV + DADEL+ERC + IK   E PF +AAC+S+VCGRRS+EILKTGEF  G + R H +C F+GAAKKK VC +   CEIPLL++ K++  +LK VR+ +PC  L+N  INSKYSHKLGDAAKIL  N+ VRFHDLR +YGM+S + +++  SINIWL K+LLHE LDTS+FYSR R++KC T  G W F
Sbjct:    9 MPSKFILEQAELLHRTKDAKPVLDNLRNKYALSSFPSQMSRVKVEWCKFGERHEQFYTIMEQAYRTACSADNTYPRRAVKELRQYMKDDMIMQMKKWRAAKSPAGLTGDEKLDDLVCKVQLLPDYMKEYRLTETDRTSSSELSKKSLETRSMDCVEIPDADELVERCIEKIKANTECPFVLAACISLVCGRRSIEILKTGEFSEGTDARGHYSCFFTGAAKKKVVCKDK--CEIPLLIKYKYLKHSLKRVRENIPCENLTNQAINSKYSHKLGDAAKILTGNMRVRFHDLRGLYGMISHRTFKNNCSINIWLTKTLLHEALDTSIFYSRFRIDKCSTNRGEWAF 350
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BLAST of mRNA_P-fluviatile_contig86.14914.1 vs. uniprot
Match: B5LWE9_9PHYC (Putative protelomerase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE9_9PHYC)

HSP 1 Score: 307 bits (786), Expect = 1.100e-99
Identity = 164/342 (47.95%), Postives = 226/342 (66.08%), Query Frame = 1 
Query:   16 MPSRFIVEQAELLHRARDPEAVLENIRKKYSTSSFCSQMSRVKAEWYKFNDRHEDFAAIMIAGYERLKKSDVSRRALKELKHYMRDDVGVQMRKRRSLRTPDGLTGDEDVDFFIASTPVLPDYMSGYQLSPEDRIVSSENSRKSLEARSMDCVIVEDADELLERCKKTIKELREDPFFIAACLSVVCGRRSVEILKTGEFRGVEGRD-HACLFSGAAKKKTVCANAKCCEIPLLMRSKHVIAALKHVRDLLPCAAL-SNSQINSKYSHKLGDAAKILMNNLGVRFHDLRCIYGMVSFKVYEHGGSINIWLKKSLLHETLDTSVFYSRCRVEKCETRLGRWDF 1035
            MPS FI +QAELLH  RDP  VL+NIR KY+ SSF SQM+RVK EW+K+ DRH+DF      GY  LK  +VS + L + + +  D +  Q+ K +     + LTG +  D  IAS  ++PDYM+GY+L+  D   +   S   LE R+M CV V+DAD L+ +C K +  L +D   + A L+VV GRR++EILK GEFR   G+  +A  F+GAAK++   + +   ++PLL++ K+V  AL  +R  +P     SN+ IN+++SHKLGDAAKI+ N++  RFHDLR IYG V+   +E+  SINIWLK+ LLH+++DTSVFYSRC+V KC  RLG WDF
Sbjct:    1 MPSAFIRKQAELLHTLRDPLTVLQNIRDKYAVSSFPSQMTRVKDEWFKYGDRHKDFGTQWKKGYASLKSQNVSGKYLDQYREFQEDKMKEQLLKVKEAAA-NRLTGSKRTDAAIASIKIMPDYMAGYRLTKADIAKNKSLSTDGLEKRAMQCVDVDDADALVSQCTKILVSLEDDIHVVVAALAVVTGRRAIEILKVGEFRKSVGKGPYAMSFNGAAKRREKNSESTSQDVPLLVKFKYVKRALDLIRSRIPIGPDDSNAVINARFSHKLGDAAKIITNSVSTRFHDLRAIYGCVTHVAFENKCSINIWLKRVLLHDSIDTSVFYSRCKVSKCLLRLGDWDF 341
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BLAST of mRNA_P-fluviatile_contig86.14914.1 vs. uniprot
Match: Q6XLY5_9PHYC (FirrV-1-B51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY5_9PHYC)

HSP 1 Score: 286 bits (732), Expect = 5.500e-91
Identity = 152/346 (43.93%), Postives = 215/346 (62.14%), Query Frame = 1 
Query:    1 CVQDKMPSRFIVEQAELLHRARDPEAVLENIRKKYSTSSFCSQMSRVKAEWYKFNDRHEDFAAIMIAGYERLKKSDVSRRALKELKHYMRDDVGVQMRKRRSLRTPDGLTGDEDVDFFIASTPVLPDYMSGYQLSPEDRIVSSENSRKSLEARSMDCVIVEDADELLERCKKTIKELREDPFFIAACLSVVCGRRSVEILKTGEFRGVEGR---DHACLFSGAAKKKTVCANAKCCEIPLLMRSKHVIAALKHVRDLLPCAALSNSQINSKYSHKLGDAAKILMNNLGVRFHDLRCIYGMVSFKVYEHGGSINIWLKKSLLHETLDTSVFYSRCRVEKCETRLGRW 1029
            C    MPS FI +QA+LL+ +RDP  VL+NIR +Y+ SSF SQM+RVK EWY + DRH ++  ++  GY  LK  ++S R + +   +  D +  Q+ K +   +   LTG    D  IA   ++P+YM  Y+L+ ED   + E+S   LE R+M+C+ V+DAD+L+  C   +K+L ED   I A L+VV GRR +EI KTG F          +A  F G AKK+      +  ++PLL + K+V  A+ HVR  +  + L N+ IN+K SH++GDAAKIL   L  RFHDLR IYG V+  V+E+  SINIWLK  LLH+ +DTSV+YSRC++ KC  ++GRW
Sbjct:   31 CTSTTMPSAFIRKQAKLLYSSRDPLTVLQNIRDEYAVSSFPSQMTRVKQEWYHYKDRHSEYEDMIKKGYSTLKSQNISSRYISQFTKFHNDTMKEQLHKIQQA-SAGKLTGSRRTDAIIAGIKIMPEYMRDYRLTKEDLNRNKESSSAFLELRAMNCIEVDDADQLVSACIPILKDLEEDVHMIMAALAVVTGRRCIEIAKTGHFMPTPSNARWPYAMRFDGVAKKRGTDFQPR--DVPLLAKYKYVRRAVDHVRAKICVSNLPNNIINAKLSHRVGDAAKILTGRLSTRFHDLRAIYGCVTHMVFENTCSINIWLKHVLLHDNIDTSVYYSRCKIAKCTLKMGRW 373
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BLAST of mRNA_P-fluviatile_contig86.14914.1 vs. uniprot
Match: A2I304_9CAUD (Protelomerase n=4 Tax=root TaxID=1 RepID=A2I304_9CAUD)

HSP 1 Score: 59.3 bits (142), Expect = 4.880e-6
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 
Query:  493 ELLERCKKTIKELREDPFF-IAACLSVVCGRRSVEILKTGEFRGVEGRDHACLFSGAAKKKTVCANAKCCEIPLLMRSKHVIAALKHVRDLLPCAALS----------NSQINSKYSHKLGDAAKILMNNLGVRFHDLRCIYGMVSFKVYEHGG------SINIWLKKSLLHETLDTSVFYSRCRVEKCE 1011
            ELL +  KT+       F  +A  + +  GRRS+EILK GEF+ V+  +    FSG AKK+     ++   I  L+ S  V+ ALK++R+L    AL           N  IN + +  L   AK    +    F D R I+  ++++++            +++ ++ L HE ++T   Y + +V+  E
Sbjct:  192 ELLTKKTKTVGSDSTYSFSRLALGIGLATGRRSIEILKQGEFKKVD--EQRLEFSGQAKKRGGADYSETYTIYTLVDSDLVLMALKNLRELPEVRALDEYDQLGEIKRNDAINKRCAKTLNQTAKQFFGSDERVFKDSRAIWARLAYELFFQRDPRWKKKDEDVFWQEMLGHEDIETQKAYKQFKVDYSE 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig86.14914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNB2_ESV1K3.050e-13358.14EsV-1-175 n=2 Tax=root TaxID=1 RepID=Q8QNB2_ESV1K[more]
B5LWE9_9PHYC1.100e-9947.95Putative protelomerase n=1 Tax=Feldmannia species ... [more]
Q6XLY5_9PHYC5.500e-9143.93FirrV-1-B51 n=1 Tax=Feldmannia irregularis virus a... [more]
A2I304_9CAUD4.880e-627.89Protelomerase n=4 Tax=root TaxID=1 RepID=A2I304_9C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig86contigP-fluviatile_contig86:79413..80456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score66.6
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog1283337.B0ZSI2_BPHA1
EggNOG free text desc.Pfam:Telomere_res
EggNOG OGs4QASF@10239,4QJR7@10662,4QT38@28883,4QZZT@35237
COG Functional cat.S
Best tax levelMyoviridae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1044
Cds size1029
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.9187255-CDS-P-fluviatile_contig86:79412..804411622817294.9187255-CDS-P-fluviatile_contig86:79412..80441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 79413..80441 -
1693571970.2278767-CDS-P-fluviatile_contig86:79412..804411693571970.2278767-CDS-P-fluviatile_contig86:79412..80441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 79413..80441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.9359365-UTR-P-fluviatile_contig86:80441..804561622817294.9359365-UTR-P-fluviatile_contig86:80441..80456Porterinema fluviatile SAG_2381UTRP-fluviatile_contig86 80442..80456 -
1693571970.245543-UTR-P-fluviatile_contig86:80441..804561693571970.245543-UTR-P-fluviatile_contig86:80441..80456Porterinema fluviatile SAG_2381UTRP-fluviatile_contig86 80442..80456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig86.14914.1prot_P-fluviatile_contig86.14914.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig86 79413..80441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig86.14914.1

>prot_P-fluviatile_contig86.14914.1 ID=prot_P-fluviatile_contig86.14914.1|Name=mRNA_P-fluviatile_contig86.14914.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=343bp
MPSRFIVEQAELLHRARDPEAVLENIRKKYSTSSFCSQMSRVKAEWYKFN
DRHEDFAAIMIAGYERLKKSDVSRRALKELKHYMRDDVGVQMRKRRSLRT
PDGLTGDEDVDFFIASTPVLPDYMSGYQLSPEDRIVSSENSRKSLEARSM
DCVIVEDADELLERCKKTIKELREDPFFIAACLSVVCGRRSVEILKTGEF
RGVEGRDHACLFSGAAKKKTVCANAKCCEIPLLMRSKHVIAALKHVRDLL
PCAALSNSQINSKYSHKLGDAAKILMNNLGVRFHDLRCIYGMVSFKVYEH
GGSINIWLKKSLLHETLDTSVFYSRCRVEKCETRLGRWDFVA*
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mRNA from alignment at P-fluviatile_contig86:79413..80456-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig86.14914.1 ID=mRNA_P-fluviatile_contig86.14914.1|Name=mRNA_P-fluviatile_contig86.14914.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1044bp|location=Sequence derived from alignment at P-fluviatile_contig86:79413..80456- (Porterinema fluviatile SAG_2381)
TGCGTTCAAGATAAGATGCCTTCAAGATTCATCGTCGAGCAAGCCGAGCT
CCTGCACAGGGCCAGGGACCCCGAGGCCGTCCTGGAAAACATAAGGAAGA
AGTACTCGACGAGCTCCTTCTGCAGCCAGATGTCCAGGGTGAAGGCGGAG
TGGTACAAGTTCAACGACAGGCACGAGGACTTCGCCGCCATCATGATCGC
CGGGTACGAGAGGCTCAAGAAGTCGGACGTCTCCAGGAGAGCCCTGAAGG
AGCTGAAGCACTACATGAGGGACGACGTGGGGGTCCAGATGAGGAAGAGG
AGGTCGCTCAGGACGCCGGACGGTCTGACCGGGGACGAAGACGTCGACTT
CTTCATCGCGTCGACCCCCGTCCTCCCGGACTACATGTCCGGGTACCAGC
TCTCCCCGGAGGACAGGATCGTGTCCTCGGAGAACTCGAGGAAGAGTCTC
GAAGCGAGGTCGATGGACTGCGTGATCGTCGAGGACGCGGACGAGCTTCT
CGAGAGGTGCAAGAAGACGATCAAGGAGCTGAGGGAGGACCCGTTCTTCA
TCGCGGCGTGCCTGTCGGTCGTGTGCGGCAGGAGGTCGGTCGAGATCCTC
AAGACGGGAGAATTTCGGGGCGTCGAGGGCCGGGATCACGCGTGCCTGTT
CTCGGGGGCCGCCAAGAAGAAGACGGTGTGCGCGAACGCGAAGTGCTGCG
AGATCCCTCTGCTGATGAGGTCCAAGCACGTGATCGCGGCCCTCAAGCAC
GTGCGAGACCTCTTGCCCTGCGCCGCGCTCAGCAACAGCCAGATCAACTC
CAAGTACTCCCACAAGCTGGGGGACGCCGCCAAGATCCTCATGAACAACC
TGGGGGTCAGGTTCCACGATCTCCGCTGCATATACGGGATGGTCTCGTTC
AAGGTGTACGAGCACGGCGGATCCATCAACATATGGCTCAAGAAGTCCCT
CCTCCACGAGACCCTCGACACGTCCGTGTTTTACTCGAGGTGCAGGGTCG
AGAAGTGCGAGACGAGGCTCGGCAGGTGGGATTTCGTCGCATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig86:79413..80456-

>mRNA_P-fluviatile_contig86.14914.1 ID=mRNA_P-fluviatile_contig86.14914.1|Name=mRNA_P-fluviatile_contig86.14914.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2058bp|location=Sequence derived from alignment at P-fluviatile_contig86:79413..80456- (Porterinema fluviatile SAG_2381)
ATGCCTTCAAGATTCATCGTCGAGCAAGCCGAGCTCCTGCACAGGGCCAG
GGACCCCGAGGCCGTCCTGGAAAACATAAGGAAGAAGTACTCGACGAGCT
CCTTCTGCAGCCAGATGTCCAGGGTGAAGGCGGAGTGGTACAAGTTCAAC
GACAGGCACGAGGACTTCGCCGCCATCATGATCGCCGGGTACGAGAGGCT
CAAGAAGTCGGACGTCTCCAGGAGAGCCCTGAAGGAGCTGAAGCACTACA
TGAGGGACGACGTGGGGGTCCAGATGAGGAAGAGGAGGTCGCTCAGGACG
CCGGACGGTCTGACCGGGGACGAAGACGTCGACTTCTTCATCGCGTCGAC
CCCCGTCCTCCCGGACTACATGTCCGGGTACCAGCTCTCCCCGGAGGACA
GGATCGTGTCCTCGGAGAACTCGAGGAAGAGTCTCGAAGCGAGGTCGATG
GACTGCGTGATCGTCGAGGACGCGGACGAGCTTCTCGAGAGGTGCAAGAA
GACGATCAAGGAGCTGAGGGAGGACCCGTTCTTCATCGCGGCGTGCCTGT
CGGTCGTGTGCGGCAGGAGGTCGGTCGAGATCCTCAAGACGGGAGAATTT
CGGGGCGTCGAGGGCCGGGATCACGCGTGCCTGTTCTCGGGGGCCGCCAA
GAAGAAGACGGTGTGCGCGAACGCGAAGTGCTGCGAGATCCCTCTGCTGA
TGAGGTCCAAGCACGTGATCGCGGCCCTCAAGCACGTGCGAGACCTCTTG
CCCTGCGCCGCGCTCAGCAACAGCCAGATCAACTCCAAGTACTCCCACAA
GCTGGGGGACGCCGCCAAGATCCTCATGAACAACCTGGGGGTCAGGTTCC
ACGATCTCCGCTGCATATACGGGATGGTCTCGTTCAAGGTGTACGAGCAC
GGCGGATCCATCAACATATGGCTCAAGAAGTCCCTCCTCCACGAGACCCT
CGACACGTCCGTGTTTTACTCGAGGTGCAGGGTCGAGAAGTGCGAGACGA
GGCTCGGCAGGTGGGATTTCGTCGCATGAATGCCTTCAAGATTCATCGTC
GAGCAAGCCGAGCTCCTGCACAGGGCCAGGGACCCCGAGGCCGTCCTGGA
AAACATAAGGAAGAAGTACTCGACGAGCTCCTTCTGCAGCCAGATGTCCA
GGGTGAAGGCGGAGTGGTACAAGTTCAACGACAGGCACGAGGACTTCGCC
GCCATCATGATCGCCGGGTACGAGAGGCTCAAGAAGTCGGACGTCTCCAG
GAGAGCCCTGAAGGAGCTGAAGCACTACATGAGGGACGACGTGGGGGTCC
AGATGAGGAAGAGGAGGTCGCTCAGGACGCCGGACGGTCTGACCGGGGAC
GAAGACGTCGACTTCTTCATCGCGTCGACCCCCGTCCTCCCGGACTACAT
GTCCGGGTACCAGCTCTCCCCGGAGGACAGGATCGTGTCCTCGGAGAACT
CGAGGAAGAGTCTCGAAGCGAGGTCGATGGACTGCGTGATCGTCGAGGAC
GCGGACGAGCTTCTCGAGAGGTGCAAGAAGACGATCAAGGAGCTGAGGGA
GGACCCGTTCTTCATCGCGGCGTGCCTGTCGGTCGTGTGCGGCAGGAGGT
CGGTCGAGATCCTCAAGACGGGAGAATTTCGGGGCGTCGAGGGCCGGGAT
CACGCGTGCCTGTTCTCGGGGGCCGCCAAGAAGAAGACGGTGTGCGCGAA
CGCGAAGTGCTGCGAGATCCCTCTGCTGATGAGGTCCAAGCACGTGATCG
CGGCCCTCAAGCACGTGCGAGACCTCTTGCCCTGCGCCGCGCTCAGCAAC
AGCCAGATCAACTCCAAGTACTCCCACAAGCTGGGGGACGCCGCCAAGAT
CCTCATGAACAACCTGGGGGTCAGGTTCCACGATCTCCGCTGCATATACG
GGATGGTCTCGTTCAAGGTGTACGAGCACGGCGGATCCATCAACATATGG
CTCAAGAAGTCCCTCCTCCACGAGACCCTCGACACGTCCGTGTTTTACTC
GAGGTGCAGGGTCGAGAAGTGCGAGACGAGGCTCGGCAGGTGGGATTTCG
TCGCATGA
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