mRNA_P-fluviatile_contig85.14903.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14903.1
Unique NamemRNA_P-fluviatile_contig85.14903.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:202916..203514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14903.1prot_P-fluviatile_contig85.14903.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 203166..203492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.8833067-UTR-P-fluviatile_contig85:202915..2031651622817291.8833067-UTR-P-fluviatile_contig85:202915..203165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 202916..203165 +
1693571960.384324-UTR-P-fluviatile_contig85:202915..2031651693571960.384324-UTR-P-fluviatile_contig85:202915..203165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 202916..203165 +
1622817291.9068773-UTR-P-fluviatile_contig85:203492..2035141622817291.9068773-UTR-P-fluviatile_contig85:203492..203514Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 203493..203514 +
1693571963.702756-UTR-P-fluviatile_contig85:203492..2035141693571963.702756-UTR-P-fluviatile_contig85:203492..203514Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 203493..203514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.8944669-CDS-P-fluviatile_contig85:203165..2034921622817291.8944669-CDS-P-fluviatile_contig85:203165..203492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 203166..203492 +
1693571963.6905782-CDS-P-fluviatile_contig85:203165..2034921693571963.6905782-CDS-P-fluviatile_contig85:203165..203492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 203166..203492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14903.1

>prot_P-fluviatile_contig85.14903.1 ID=prot_P-fluviatile_contig85.14903.1|Name=mRNA_P-fluviatile_contig85.14903.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
MHGRTHGRTHQLTNGRSNRRNQCEMSKAKKPGMKTVSTESTFCRTRPGDG
GGDRAIRRIRFSSIVTVDAPKGYGVVLLCTGNEVLLPARESCINTSLATY
TPCGLNYK*
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mRNA from alignment at P-fluviatile_contig85:202916..203514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14903.1 ID=mRNA_P-fluviatile_contig85.14903.1|Name=mRNA_P-fluviatile_contig85.14903.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=599bp|location=Sequence derived from alignment at P-fluviatile_contig85:202916..203514+ (Porterinema fluviatile SAG_2381)
GTTCCATAAACCCGTAGCTCCCAATATGTTTCCTCTGACTGTCTTCACCG
TTTGCGAATAGTCTCAGCAACCCCTCCTCTGAAGCTAGCCTCCCTCTGCA
TGAACGACGCTAACCTGTGCTGGTGGCGAATGGTGATCGTTATATAGATG
CCAAACTTTTCCTCCGGTTCTACCCGGCGGCGCGAAACACTAGCTCGAGC
GTGGAATAGAAACATAGAAACGAAAGATCAGCGGACGGACGCACGGACGG
ATGCACGGACGGACGCACGGGCGGACGCATCAATTGACGAATGGGAGAAG
CAACCGAAGAAATCAATGCGAAATGTCGAAGGCAAAGAAGCCGGGAATGA
AAACAGTCAGCACGGAGTCGACATTTTGCCGCACGAGACCAGGGGACGGG
GGAGGTGACAGAGCTATTCGGCGCATCCGCTTCAGCAGTATTGTGACCGT
AGATGCCCCCAAGGGATACGGAGTCGTTTTGCTTTGCACCGGAAACGAAG
TGCTTTTACCCGCCCGTGAATCCTGCATTAATACGTCTCTCGCCACCTAC
ACGCCGTGCGGCTTGAATTACAAGTGATGGTACGAGATCTCGAAGGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:202916..203514+

>mRNA_P-fluviatile_contig85.14903.1 ID=mRNA_P-fluviatile_contig85.14903.1|Name=mRNA_P-fluviatile_contig85.14903.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig85:202916..203514+ (Porterinema fluviatile SAG_2381)
ATGCACGGACGGACGCACGGGCGGACGCATCAATTGACGAATGGGAGAAG
CAACCGAAGAAATCAATGCGAAATGTCGAAGGCAAAGAAGCCGGGAATGA
AAACAGTCAGCACGGAGTCGACATTTTGCCGCACGAGACCAGGGGACGGG
GGAGGTGACAGAGCTATTCGGCGCATCCGCTTCAGCAGTATTGTGACCGT
AGATGCCCCCAAGGGATACGGAGTCGTTTTGCTTTGCACCGGAAACGAAG
TGCTTTTACCCGCCCGTGAATCCTGCATTAATACGTCTCTCGCCACCTAC
ACGCCGTGCGGCTTGAATTACAAGTGAATGCACGGACGGACGCACGGGCG
GACGCATCAATTGACGAATGGGAGAAGCAACCGAAGAAATCAATGCGAAA
TGTCGAAGGCAAAGAAGCCGGGAATGAAAACAGTCAGCACGGAGTCGACA
TTTTGCCGCACGAGACCAGGGGACGGGGGAGGTGACAGAGCTATTCGGCG
CATCCGCTTCAGCAGTATTGTGACCGTAGATGCCCCCAAGGGATACGGAG
TCGTTTTGCTTTGCACCGGAAACGAAGTGCTTTTACCCGCCCGTGAATCC
TGCATTAATACGTCTCTCGCCACCTACACGCCGTGCGGCTTGAATTACAA
GTGA
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