mRNA_P-fluviatile_contig83.14841.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14841.1
Unique NamemRNA_P-fluviatile_contig83.14841.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14841.1 vs. uniprot
Match: D7G7H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.270e-24
Identity = 127/332 (38.25%), Postives = 163/332 (49.10%), Query Frame = 1 
Query:    1 MFLASVGLLKHKRTRNTLAAEPTPRSSCPSESSS----VAEPGVHAASSGPAAGPKKATTGGNTINAAGSDPGSRSP---------AYAARAESAPTWKPTPKEARIFESDDERAGPKKGSASASPRLFRCPTSSARARPLAFYDCDH-VGTGNYQQRPES--------ASAAATATTAAATFDPESPEAKALAAESRFLPVRVVEKVFKGRRLAAVQAWDPQAAAAVRAAKAEKLLRRALSGRTRANRAP-IPAAAPARRRSPIATATXXXXGGRRGKGAAGPCPDERDGGRHARRLSTRQEFKLECGDAAGHRGGAERAAGWRGTRTDGK 927
            MFLAS+G LKHKRTRNT+AAE TPRSSC SE+      VA+PG+      P    K  T     I       G  +P         A   RA   P   P  K     ++  +R G +  + + SP     PT+    +    +  +H +  G     P          A AA++AT+A      + P  + +AAE+R +PV  + + FKGRRLAAVQAWDP AAAAVRA +AEK+LRRAL GRTRAN    +PAAAPARRR   A  T         K AA    + + GG  + R       + +C  A    G AERA G  G+  D K
Sbjct:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCSSEADPTAALVADPGI------PKTTEKHQTNSVKNIENEAVVKGVSAPVQYAETRGAAAVGRASDWPGDNPGVKHMNSGKAVGDRKGFR--TPAWSPPRPLSPTAKRNDQDADSHPRNHGISNGGDDLLPAKGPTEGNLGARAASSATSA------KFPTGEDVAAETRLMPVGALHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRALLGRTRANSGETMPAAAPARRRPRKAPGT---------KAAATTTTEHKVGGIGSDRGGGVGGAR-KCSSARRVGGPAERAVGRGGSLGDSK 308
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BLAST of mRNA_P-fluviatile_contig83.14841.1 vs. uniprot
Match: A0A6H5KIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.470e-19
Identity = 68/121 (56.20%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:  373 ARPLAFYDCDHVGTGNY------QQRPESASAAATATTAAATFDPESPEAKALAAESRFLPVRVVEKVFKGRRLAAVQAWDPQAAAAVRAAKAEKLLRRALSGRTRANRAPIPAAAPARRR 717
            AR L  YD    G G++       QRP+SA+AAA +  AAA     S  A+ +AAE+R +PV V+ + FKGRRLAAVQAWDP AAAAVRA +AEK+LRRA  GRT  N   +PAAAPARRR
Sbjct:  339 ARALPEYDLRPKGDGSFTVRTKGDQRPKSANAAAASVNAAAGAKFSS--AEDVAAETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRAFLGRTGTNSREMPAAAPARRR 457
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H0_ECTSI6.270e-2438.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIE2_9PHAE1.470e-1956.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:141728..143314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000240.1
Exons2
Model size942
Cds size942
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.881364-CDS-P-fluviatile_contig83:141727..1420961622817284.881364-CDS-P-fluviatile_contig83:141727..142096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 141728..142096 +
1693571939.7528472-CDS-P-fluviatile_contig83:141727..1420961693571939.7528472-CDS-P-fluviatile_contig83:141727..142096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 141728..142096 +
1622817284.8943765-CDS-P-fluviatile_contig83:142741..1433141622817284.8943765-CDS-P-fluviatile_contig83:142741..143314Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 142742..143314 +
1693571939.7606502-CDS-P-fluviatile_contig83:142741..1433141693571939.7606502-CDS-P-fluviatile_contig83:142741..143314Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 142742..143314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14841.1prot_P-fluviatile_contig83.14841.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 141728..143314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14841.1

>prot_P-fluviatile_contig83.14841.1 ID=prot_P-fluviatile_contig83.14841.1|Name=mRNA_P-fluviatile_contig83.14841.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=314bp
MFLASVGLLKHKRTRNTLAAEPTPRSSCPSESSSVAEPGVHAASSGPAAG
PKKATTGGNTINAAGSDPGSRSPAYAARAESAPTWKPTPKEARIFESDDE
RAGPKKGSASASPRLFRCPTSSARARPLAFYDCDHVGTGNYQQRPESASA
AATATTAAATFDPESPEAKALAAESRFLPVRVVEKVFKGRRLAAVQAWDP
QAAAAVRAAKAEKLLRRALSGRTRANRAPIPAAAPARRRSPIATATAAAG
GGRRGKGAAGPCPDERDGGRHARRLSTRQEFKLECGDAAGHRGGAERAAG
WRGTRTDGKDCRR*
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mRNA from alignment at P-fluviatile_contig83:141728..143314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14841.1 ID=mRNA_P-fluviatile_contig83.14841.1|Name=mRNA_P-fluviatile_contig83.14841.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1587bp|location=Sequence derived from alignment at P-fluviatile_contig83:141728..143314+ (Porterinema fluviatile SAG_2381)
ATGTTCTTGGCCTCCGTTGGGCTGCTCAAGCACAAACGGACGCGGAATAC
CCTCGCTGCGGAGCCCACGCCCCGCTCCTCATGCCCTTCCGAAAGCAGCT
CGGTCGCCGAGCCGGGAGTGCATGCAGCAAGTTCTGGCCCAGCCGCTGGT
CCGAAAAAGGCCACCACCGGCGGCAACACGATCAACGCCGCCGGCTCAGA
CCCAGGGTCCCGATCGCCGGCTTACGCCGCGCGAGCCGAAAGCGCGCCGA
CATGGAAGCCAACGCCCAAAGAGGCACGTATTTTCGAAAGCGACGACGAA
AGGGCGGGGCCAAAGAAAGGCAGCGCTTCCGCGTCGCCGCGGCTGTTCCG
ATGTCCCACGTCGTCTGCGGTAGCGACCCGTCGCCGGAAAGCCGACGCCG
GTCTCAAAGCGCCGGTGTCCTCTGCGGCGGCTTGGGGTGCCCCTCCCCCC
TCGCTGTCGCCGGGGATTACTCTACGTCAGAAAGACAAACCTTCGTCCAA
CAGCAAGCAGGCCACCGACCGCAGTCGACCTCGTTCTGCTGCCCCGGGGC
TGAGGCGTCAGCGAGCCAGATCCCCGGGGGGCGAAGGATGGATCCACCGG
ACTCCGCCTCCGGGGAGCATCACCGCTGGCGCCGCCGCCGTCACTTGTAC
CACCCCCGAGTGGGCGGAAGACGGCGTTCCAGTACACGTTGGCCCCGTGA
TAACCGCCGCACATGCCGTCGACGGCAACGTGCCTTGTGGCCTCCGCCCG
GCATCTGCGGGGGTGGAGACGGCAGCACCGGCGGAACTTACTACTCCGTC
AAAGCCGCCGCATTCCTCGACAGCGTCCGGCGATCGAGAATGGTTCGGGA
AAAGCGGCGATGACGGCCGTGGAAACGCTGCTGTTCGCGGTGGCGGCGGC
GGCGGCGGCCGTGGCGTACGCCGAAAGGGAGGAGACAAGCTGGGGTCGGA
GGCGGGAGAGCTCAGCGGCCGATCCTCTGAGACGGAGGGATCCTTTGCGG
CGAGCATCATCAAGAGGGCGCGCCCGCTCGCCTTCTACGACTGCGACCAC
GTCGGGACCGGCAACTACCAGCAACGCCCCGAGAGCGCGAGCGCAGCCGC
CACCGCGACAACAGCTGCCGCCACGTTTGACCCGGAATCCCCCGAAGCAA
AAGCCCTCGCGGCCGAGAGCCGGTTCCTGCCGGTCAGGGTCGTCGAAAAG
GTCTTTAAGGGGCGCCGCCTGGCCGCTGTGCAGGCGTGGGATCCGCAGGC
GGCGGCCGCCGTCCGCGCGGCAAAGGCGGAGAAGCTACTGCGTCGAGCCC
TCAGCGGCAGAACCCGAGCCAATCGGGCCCCGATTCCGGCAGCGGCCCCG
GCCAGACGGCGGTCGCCCATCGCCACGGCCACGGCGGCGGCGGGAGGAGG
CAGAAGAGGAAAAGGCGCGGCCGGTCCTTGCCCCGACGAGCGCGATGGCG
GGCGGCATGCTCGAAGATTGTCGACCAGGCAAGAATTTAAACTGGAGTGC
GGAGACGCGGCCGGGCACAGGGGGGGGGCGGAGAGAGCCGCAGGCTGGCG
GGGCACCCGCACTGACGGAAAGGACTGCCGCCGGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:141728..143314+

>mRNA_P-fluviatile_contig83.14841.1 ID=mRNA_P-fluviatile_contig83.14841.1|Name=mRNA_P-fluviatile_contig83.14841.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1884bp|location=Sequence derived from alignment at P-fluviatile_contig83:141728..143314+ (Porterinema fluviatile SAG_2381)
ATGTTCTTGGCCTCCGTTGGGCTGCTCAAGCACAAACGGACGCGGAATAC
CCTCGCTGCGGAGCCCACGCCCCGCTCCTCATGCCCTTCCGAAAGCAGCT
CGGTCGCCGAGCCGGGAGTGCATGCAGCAAGTTCTGGCCCAGCCGCTGGT
CCGAAAAAGGCCACCACCGGCGGCAACACGATCAACGCCGCCGGCTCAGA
CCCAGGGTCCCGATCGCCGGCTTACGCCGCGCGAGCCGAAAGCGCGCCGA
CATGGAAGCCAACGCCCAAAGAGGCACGTATTTTCGAAAGCGACGACGAA
AGGGCGGGGCCAAAGAAAGGCAGCGCTTCCGCGTCGCCGCGGCTGTTCCG
ATGTCCCACGTCGTCTGCGATGTTCTTGGCCTCCGTTGGGCTGCTCAAGC
ACAAACGGACGCGGAATACCCTCGCTGCGGAGCCCACGCCCCGCTCCTCA
TGCCCTTCCGAAAGCAGCTCGGTCGCCGAGCCGGGAGTGCATGCAGCAAG
TTCTGGCCCAGCCGCTGGTCCGAAAAAGGCCACCACCGGCGGCAACACGA
TCAACGCCGCCGGCTCAGACCCAGGGTCCCGATCGCCGGCTTACGCCGCG
CGAGCCGAAAGCGCGCCGACATGGAAGCCAACGCCCAAAGAGGCACGTAT
TTTCGAAAGCGACGACGAAAGGGCGGGGCCAAAGAAAGGCAGCGCTTCCG
CGTCGCCGCGGCTGTTCCGATGTCCCACGTCGTCTGCGAGGGCGCGCCCG
CTCGCCTTCTACGACTGCGACCACGTCGGGACCGGCAACTACCAGCAACG
CCCCGAGAGCGCGAGCGCAGCCGCCACCGCGACAACAGCTGCCGCCACGT
TTGACCCGGAATCCCCCGAAGCAAAAGCCCTCGCGGCCGAGAGCCGGTTC
CTGCCGGTCAGGGTCGTCGAAAAGGTCTTTAAGGGGCGCCGCCTGGCCGC
TGTGCAGGCGTGGGATCCGCAGGCGGCGGCCGCCGTCCGCGCGGCAAAGG
CGGAGAAGCTACTGCGTCGAGCCCTCAGCGGCAGAACCCGAGCCAATCGG
GCCCCGATTCCGGCAGCGGCCCCGGCCAGACGGCGGTCGCCCATCGCCAC
GGCCACGGCGGCGGCGGGAGGAGGCAGAAGAGGAAAAGGCGCGGCCGGTC
CTTGCCCCGACGAGCGCGATGGCGGGCGGCATGCTCGAAGATTGTCGACC
AGGCAAGAATTTAAACTGGAGTGCGGAGACGCGGCCGGGCACAGGGGGGG
GGCGGAGAGAGCCGCAGGCTGGCGGGGCACCCGCACTGACGGAAAGGACT
GCCGCCGGTGAAGGGCGCGCCCGCTCGCCTTCTACGACTGCGACCACGTC
GGGACCGGCAACTACCAGCAACGCCCCGAGAGCGCGAGCGCAGCCGCCAC
CGCGACAACAGCTGCCGCCACGTTTGACCCGGAATCCCCCGAAGCAAAAG
CCCTCGCGGCCGAGAGCCGGTTCCTGCCGGTCAGGGTCGTCGAAAAGGTC
TTTAAGGGGCGCCGCCTGGCCGCTGTGCAGGCGTGGGATCCGCAGGCGGC
GGCCGCCGTCCGCGCGGCAAAGGCGGAGAAGCTACTGCGTCGAGCCCTCA
GCGGCAGAACCCGAGCCAATCGGGCCCCGATTCCGGCAGCGGCCCCGGCC
AGACGGCGGTCGCCCATCGCCACGGCCACGGCGGCGGCGGGAGGAGGCAG
AAGAGGAAAAGGCGCGGCCGGTCCTTGCCCCGACGAGCGCGATGGCGGGC
GGCATGCTCGAAGATTGTCGACCAGGCAAGAATTTAAACTGGAGTGCGGA
GACGCGGCCGGGCACAGGGGGGGGGCGGAGAGAGCCGCAGGCTGGCGGGG
CACCCGCACTGACGGAAAGGACTGCCGCCGGTGA
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