mRNA_P-fluviatile_contig83.14838.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14838.1
Unique NamemRNA_P-fluviatile_contig83.14838.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14838.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 5.150e-36
Identity = 89/157 (56.69%), Postives = 100/157 (63.69%), Query Frame = 3 
Query:    9 RRPTEAMELRRAAEVQKCADKGWKSAMICLGNMRKGGVSPGTAAYNVALRACVGAGEWYRAAALVEVMKGSGATLDAALAREIDSGLTTAAGGAGGDAVAMGFEKDADLACDAVSPGSGAGGISXXXXXXXXXXXXSRLGYVAGMHTTAVYADADWP 479
            RRPT AMELRRAAEVQKCADKGWKSA+ICLGNMRKGGV+PG+AAYNVAL+AC GAGEW RAAALVE M+GSGA  D  +  EI +        AG     +  E D +L+CD  S G  +  IS               G VA MHT A  AD  WP
Sbjct:   48 RRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRA--------AGDKTGVIAVEDDGNLSCD--SGGDVSSVISGVARNKGGGSGGGIQGSVASMHTAAFGADVAWP 194
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BLAST of mRNA_P-fluviatile_contig83.14838.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.700e-32
Identity = 106/270 (39.26%), Postives = 129/270 (47.78%), Query Frame = 3 
Query:    9 RRPTEAMELRRAAEVQKCADKGWKSAMICLGNMRKGGVSPGTAAYNVALRACVGAGEWYRAAALVEVMKGSGATLDAALAREIDSGLTTAAGGAGGDAVAMGFEKDADLACDAVSPGSGAGGISXXXXXXXXXXXXSRLGYVAGMHTTAVYADADWPRGGXXXXXXXXXXXXXXXXXXXXXXXXXXGSTGSG-------RGVAGGLSSLRSMAWDEGPWRNHSKQQXXXXRQHGHYLAGGRGNLHAAERGGKNKGAWPSAAPAPLAECWG 797
            RRPT AMEL+RAAEVQKCADKGWKSA+ICLGNMRKGGV+PG++AYNVAL+AC GAGEW RAAALVE M+GSGA  D  +  EI +        AG + V M    + DL+CD+       G +S            S      G  +     DA WP                             G++G G       RG +G   SL S+AW    WR+   +              G   +   + GG    AW S A AP A  WG
Sbjct:   48 RRPTAAMELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRA--------AGDNVVVMELGDNDDLSCDS------GGDVSSVL---------SGAARNKGGESGGGIQDAAWPS------------------RRPTNSNNSTGTSGGGDFGSAATRGSSG--RSLGSIAWGGRRWRSQHDENEDENASSASPATRG---VRVVKEGGSP--AWSSVASAPFAGSWG 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGB2_9PHAE5.150e-3656.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7H2_ECTSI2.700e-3239.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:127463..130768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000260.1
Exons2
Model size1508
Cds size999
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14838.1prot_P-fluviatile_contig83.14838.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 127489..130285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.412928-UTR-P-fluviatile_contig83:127462..1274881622817283.412928-UTR-P-fluviatile_contig83:127462..127488Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 127463..127488 +
1693571934.2033982-UTR-P-fluviatile_contig83:127462..1274881693571934.2033982-UTR-P-fluviatile_contig83:127462..127488Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 127463..127488 +
1622817283.451894-UTR-P-fluviatile_contig83:130285..1307681622817283.451894-UTR-P-fluviatile_contig83:130285..130768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 130286..130768 +
1693571934.2516332-UTR-P-fluviatile_contig83:130285..1307681693571934.2516332-UTR-P-fluviatile_contig83:130285..130768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 130286..130768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.4239178-CDS-P-fluviatile_contig83:127488..1275331622817283.4239178-CDS-P-fluviatile_contig83:127488..127533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 127489..127533 +
1693571934.2192075-CDS-P-fluviatile_contig83:127488..1275331693571934.2192075-CDS-P-fluviatile_contig83:127488..127533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 127489..127533 +
1622817283.4352312-CDS-P-fluviatile_contig83:129331..1302851622817283.4352312-CDS-P-fluviatile_contig83:129331..130285Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 129332..130285 +
1693571934.2377844-CDS-P-fluviatile_contig83:129331..1302851693571934.2377844-CDS-P-fluviatile_contig83:129331..130285Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 129332..130285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14838.1

>prot_P-fluviatile_contig83.14838.1 ID=prot_P-fluviatile_contig83.14838.1|Name=mRNA_P-fluviatile_contig83.14838.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=333bp
MELRRAAEVQKCADKGWKSAMICLGNMRKGGVSPGTAAYNVALRACVGAG
EWYRAAALVEVMKGSGATLDAALAREIDSGLTTAAGGAGGDAVAMGFEKD
ADLACDAVSPGSGAGGISSGSGSGSGSGRGSRLGYVAGMHTTAVYADADW
PRGGGGIISSTDSNNNIGSSSSANSSSSSSGSTGSGRGVAGGLSSLRSMA
WDEGPWRNHSKQQQQQQRQHGHYLAGGRGNLHAAERGGKNKGAWPSAAPA
PLAECWGTTSRNCLVLRCPSCPRGAFAFFRCSRRSLAPDWSMNGVELCRL
KPVALCLCAFRSALINLFPNKPLLFVANGLGF*
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mRNA from alignment at P-fluviatile_contig83:127463..130768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14838.1 ID=mRNA_P-fluviatile_contig83.14838.1|Name=mRNA_P-fluviatile_contig83.14838.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3306bp|location=Sequence derived from alignment at P-fluviatile_contig83:127463..130768+ (Porterinema fluviatile SAG_2381)
CAGGCCCAAGGCGCCCAACGGAGGCGATGGAGCTACGCCGGGCCGCTGAG
GTTCAGAAGTGCGCCGACAAGGTGAACGAAGGGGTAGGGTCCTTCCTCGG
GGCGACGCAAAACAAAAGTGTGCAAGTGTGCGACATTTGAGAAAGGTTGT
TCACGTTTTTACACTCCGAGGACCATCACAAGAAGTGCTCCAACGCACAT
GTGTTCCAGACCCCAACAAATGTCATTTTGCGTTAACCGCAGTATGATAC
GTGCGTACTGCTGCCTTGGCCTAAAGACGCGCGCGCGCAAACCATTGCTG
TATTCCGGGGGTAGCGCCCTTGTCGAGGCGAGCGGAAAGTGGCAAGTTCC
GAAAAAACGTGCGGCGACGAGGCTTTTTCGAAATGTTGTGCACGTTTTCC
TTTTCGCTCCCAGGACCATCTTACAAAGGGCTGTTGTGCACCTGTGTTCC
AACGCCCAGCCGGTGTTCTTTTGGGTGAACGTCAGCCTGATACGTGCTTG
TTTCTGCCTCTGACATCTCTCGACGGGCGCACACACACCGCTCCTGCATT
TCTGAAACAGCACGTGTCGCCCTTCATCCACTTCAGACGTGTTGTTCTTG
TTACTAGTGAGAAGACCGAGCCGTACCATCCGGCGTGTAGCAGTTTGTGA
GCGCACGTGTCGTTGCGCCCACTCTGCATGAGTTGTGCATCGATCGGTCC
CGGTTGGCGTGCATGAGAGGTGCGTGTCCTGCACGGCGCCGTGCTGTTAT
GTGGTGTTGCCGTGAAATCCGCGAAGGAGCAAGGCTGTCTCGAATCTGGA
GGTGCCGCTTACTCTGGGGAATATGCGTTGTGTTTGGACGAACGCTTTGC
GTGCCTTTGCAGAGGCACGCAAAGATGTGGGCGGTTGACGAAGCCGTGCA
GGCCTGCCGCGTGCTTCAATGTTGGTGATATGCGTCTGATTCTTTCGTCA
TCCTCTGCGGAGATGTTCTTAAAACTCAAACCGCTTGGTCCGAACGTATC
ATTTGTGGAAGAAGAGGACAAACTATCCGCCGGCTCTCGACAAAATCCCG
CCCCCCATTCAACTCATCCCAACACCCCGGCTCTCACCTCGGTGTTTGCC
ATCGGGATTGGGTTTCCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAA
CTCACTTCGTGAACTCGGCAACCAGGTTACCGTCTTTTTTATTCCTCTGT
TTTTTTTTGCGGTAACCATAATGGTGGTCGAGGAGATCATGTTGTGCGGG
GTGGAGAATCCTCACTCCGCGCAAGCGGTATGATCGCACCACGCTGTTTT
AAAATGGTCAAGCACCCTCGAGGCAGTTACACAGTGCTTCCAACTGTCTC
TGGAAGTGAAAGCACCAGAAAATAAATTAAGCCATACGCAGCTGTCATCC
GTTTGCAAGGAAGTAAGCATAAGATGCCGAACACCCTTAGCAGGATGCAG
CGCACTTTTCATGCGACTCGCCGAGTACCTCACGGCGCTTCGGGCTTGGT
GGTGTGAGAGCCTGGTCCGGTGAGAACCCGGCATGCTCCGTCCCGACTTT
GTGGGGATGCGAGGACAATGGTCTAACGACTACGGCATGCACGACTATGA
GTACACCCCCCTTCAACTCCTCCCGGCCACCTCCGAAGCCCTGACGCCCG
GTTTTGCCCCGCGAAGGTTGTATTCTCATGGCCCCCGATGCCCGCGCCAT
TTATTTTTTCCCCCCTGACGCCCACGCTCTCGGATTTTTCTCCTCCCCCC
TCCGCGTGCCCCCCCTCCCCCGATGTTAATCGTATTTACAATTCGCCTTG
CGCCGCCGCCCCCCTCTTTCTCTGCCTCTCACCCTCTCCCTTTGTCGCGG
CATCAAACCGAAAAAAAAGGGTTGGAAGAGCGCCATGATCTGCCTCGGGA
ACATGCGAAAGGGCGGCGTCTCCCCAGGAACCGCGGCGTACAACGTGGCC
CTAAGGGCGTGTGTCGGCGCCGGGGAGTGGTACCGCGCGGCGGCCCTCGT
GGAAGTCATGAAGGGGTCGGGCGCCACCCTCGACGCCGCTCTCGCGCGCG
AGATCGATTCGGGTTTGACGACGGCGGCGGGGGGCGCGGGGGGCGATGCG
GTTGCTATGGGATTCGAGAAGGATGCTGATTTGGCGTGCGATGCCGTTTC
TCCGGGGTCTGGCGCAGGGGGGATTTCCAGCGGCAGCGGCAGCGGAAGCG
GTAGCGGCAGGGGCAGCAGGTTGGGCTACGTCGCGGGAATGCACACGACC
GCGGTCTACGCAGATGCCGATTGGCCACGCGGCGGCGGAGGTATCATTTC
CAGCACCGACAGCAACAACAACATCGGCAGCAGCAGTAGCGCTAACAGCA
GCAGCAGCAGCAGCGGCAGCACCGGTAGCGGCAGGGGAGTCGCCGGAGGG
TTGTCATCGCTGCGCAGCATGGCGTGGGATGAAGGCCCATGGCGCAACCA
CAGCAAGCAGCAGCAGCAGCAACAGCGGCAGCACGGGCACTATCTTGCGG
GGGGCCGGGGAAACCTACATGCGGCGGAGAGAGGCGGAAAGAATAAAGGG
GCATGGCCATCCGCGGCGCCAGCCCCGTTAGCGGAGTGCTGGGGGACGAC
TAGTCGGAACTGTTTGGTGTTAAGATGTCCTTCGTGTCCCCGCGGCGCGT
TCGCTTTCTTTCGGTGTTCGCGAAGATCCCTTGCTCCCGACTGGTCGATG
AACGGCGTCGAACTGTGTAGGTTGAAACCCGTGGCGCTGTGCTTATGTGC
TTTCCGCTCCGCTCTTATTAATTTATTTCCCAATAAACCTCTGCTTTTTG
TGGCAAATGGACTTGGATTTTAATAACCGTGCCGCAAGTGCGTCGTCAAG
GGCAGGATGACCGCCCACGCGTGAGCGTAGTCACTCGCTCGAGCCCGGCG
TTTGATGCATCGAGCCTCACCATCTTATTTCCTTTATTTTTTTGGACGTG
GCTCAAGCTAGGAAAGAGCACCTTAGCGCCGTGTCGTCCAAGCCTCAAGT
TGTGCCCTTTGCGGCGCCATTTTTTTTTCCTGACGCGCTAAAAGAACATC
AGCTCCAATTTTGTTTGTGGACAGGCTGCTGCTTTTTTTTTTTTTTTTGT
TTTCCCCTTTTGCGTACTGCGTCGGAGGAGCGTCGCGGTGCTGGTCATCG
CGGTGTTGGGTGTGTGAATTTGTGGAGTGCTTGCTTTCACCTGTTACGGG
TGTCCGGGCCCCCTGGATTCCGGGGGGGAAGCTGCTGCGAGATTCAGCAG
CTCAAAGGTGTCGTGCGTGTGACGTGGGCAAGCAGACTTTATGACGGATG
CGGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:127463..130768+

>mRNA_P-fluviatile_contig83.14838.1 ID=mRNA_P-fluviatile_contig83.14838.1|Name=mRNA_P-fluviatile_contig83.14838.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1998bp|location=Sequence derived from alignment at P-fluviatile_contig83:127463..130768+ (Porterinema fluviatile SAG_2381)
ATGGAGCTACGCCGGGCCGCTGAGGTTCAGAAGTGCGCCGACAAGATGGA
GCTACGCCGGGCCGCTGAGGTTCAGAAGTGCGCCGACAAGGGTTGGAAGA
GCGCCATGATCTGCCTCGGGAACATGCGAAAGGGCGGCGTCTCCCCAGGA
ACCGCGGCGTACAACGTGGCCCTAAGGGCGTGTGTCGGCGCCGGGGAGTG
GTACCGCGCGGCGGCCCTCGTGGAAGTCATGAAGGGGTCGGGCGCCACCC
TCGACGCCGCTCTCGCGCGCGAGATCGATTCGGGTTTGACGACGGCGGCG
GGGGGCGCGGGGGGCGATGCGGTTGCTATGGGATTCGAGAAGGATGCTGA
TTTGGCGTGCGATGCCGTTTCTCCGGGGTCTGGCGCAGGGGGGATTTCCA
GCGGCAGCGGCAGCGGAAGCGGTAGCGGCAGGGGCAGCAGGTTGGGCTAC
GTCGCGGGAATGCACACGACCGCGGTCTACGCAGATGCCGATTGGCCACG
CGGCGGCGGAGGTATCATTTCCAGCACCGACAGCAACAACAACATCGGCA
GCAGCAGTAGCGCTAACAGCAGCAGCAGCAGCAGCGGCAGCACCGGTAGC
GGCAGGGGAGTCGCCGGAGGGTTGTCATCGCTGCGCAGCATGGCGTGGGA
TGAAGGCCCATGGCGCAACCACAGCAAGCAGCAGCAGCAGCAACAGCGGC
AGCACGGGCACTATCTTGCGGGGGGCCGGGGAAACCTACATGCGGCGGAG
AGAGGCGGAAAGAATAAAGGGGCATGGCCATCCGCGGCGCCAGCCCCGTT
AGCGGAGTGCTGGGGGACGACTAGTCGGAACTGTTTGGTGTTAAGATGTC
CTTCGTGTCCCCGCGGCGCGTTCGCTTTCTTTCGGTGTTCGCGAAGATCC
CTTGCTCCCGACTGGTCGATGAACGGCGTCGAACTGTGTAGGTTGAAACC
CGTGGCGCTGTGCTTATGTGCTTTCCGCTCCGCTCTTATTAATTTATTTC
CCAATAAACCTCTGCTTTTTGTGGCAAATGGACTTGGATTTTAAGGTTGG
AAGAGCGCCATGATCTGCCTCGGGAACATGCGAAAGGGCGGCGTCTCCCC
AGGAACCGCGGCGTACAACGTGGCCCTAAGGGCGTGTGTCGGCGCCGGGG
AGTGGTACCGCGCGGCGGCCCTCGTGGAAGTCATGAAGGGGTCGGGCGCC
ACCCTCGACGCCGCTCTCGCGCGCGAGATCGATTCGGGTTTGACGACGGC
GGCGGGGGGCGCGGGGGGCGATGCGGTTGCTATGGGATTCGAGAAGGATG
CTGATTTGGCGTGCGATGCCGTTTCTCCGGGGTCTGGCGCAGGGGGGATT
TCCAGCGGCAGCGGCAGCGGAAGCGGTAGCGGCAGGGGCAGCAGGTTGGG
CTACGTCGCGGGAATGCACACGACCGCGGTCTACGCAGATGCCGATTGGC
CACGCGGCGGCGGAGGTATCATTTCCAGCACCGACAGCAACAACAACATC
GGCAGCAGCAGTAGCGCTAACAGCAGCAGCAGCAGCAGCGGCAGCACCGG
TAGCGGCAGGGGAGTCGCCGGAGGGTTGTCATCGCTGCGCAGCATGGCGT
GGGATGAAGGCCCATGGCGCAACCACAGCAAGCAGCAGCAGCAGCAACAG
CGGCAGCACGGGCACTATCTTGCGGGGGGCCGGGGAAACCTACATGCGGC
GGAGAGAGGCGGAAAGAATAAAGGGGCATGGCCATCCGCGGCGCCAGCCC
CGTTAGCGGAGTGCTGGGGGACGACTAGTCGGAACTGTTTGGTGTTAAGA
TGTCCTTCGTGTCCCCGCGGCGCGTTCGCTTTCTTTCGGTGTTCGCGAAG
ATCCCTTGCTCCCGACTGGTCGATGAACGGCGTCGAACTGTGTAGGTTGA
AACCCGTGGCGCTGTGCTTATGTGCTTTCCGCTCCGCTCTTATTAATTTA
TTTCCCAATAAACCTCTGCTTTTTGTGGCAAATGGACTTGGATTTTAA
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