mRNA_P-fluviatile_contig82.14819.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig82.14819.1
Unique NamemRNA_P-fluviatile_contig82.14819.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig82.14819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig82contigP-fluviatile_contig82:254131..254747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size617
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig82.14819.1prot_P-fluviatile_contig82.14819.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig82 254225..254614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.9098327-UTR-P-fluviatile_contig82:254130..2542241622817278.9098327-UTR-P-fluviatile_contig82:254130..254224Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 254131..254224 +
1693571884.618211-UTR-P-fluviatile_contig82:254130..2542241693571884.618211-UTR-P-fluviatile_contig82:254130..254224Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 254131..254224 +
1622817278.9370131-UTR-P-fluviatile_contig82:254614..2547471622817278.9370131-UTR-P-fluviatile_contig82:254614..254747Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 254615..254747 +
1693571887.3675044-UTR-P-fluviatile_contig82:254614..2547471693571887.3675044-UTR-P-fluviatile_contig82:254614..254747Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 254615..254747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.9247618-CDS-P-fluviatile_contig82:254224..2546141622817278.9247618-CDS-P-fluviatile_contig82:254224..254614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 254225..254614 +
1693571884.6263802-CDS-P-fluviatile_contig82:254224..2546141693571884.6263802-CDS-P-fluviatile_contig82:254224..254614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 254225..254614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig82.14819.1

>prot_P-fluviatile_contig82.14819.1 ID=prot_P-fluviatile_contig82.14819.1|Name=mRNA_P-fluviatile_contig82.14819.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
MLDVVRRQESDYAATTAVAAATAAGAVVIFVAATRRLLASRWRRGDHGHR
RVHTPPLPRRGGPFLQVIPIPSALFDASCLNAAGIAVAAVYRSTGAYVMI
AFAISRIAGRAMSGMPTTAFSAIWFHRRR*
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mRNA from alignment at P-fluviatile_contig82:254131..254747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig82.14819.1 ID=mRNA_P-fluviatile_contig82.14819.1|Name=mRNA_P-fluviatile_contig82.14819.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=617bp|location=Sequence derived from alignment at P-fluviatile_contig82:254131..254747+ (Porterinema fluviatile SAG_2381)
CGTCGGATGGCCGCTCCAGCAGGATCTGCCGGCACCGCTCCAGTGCGTCC
GTCACGTTGCCGGCAAGCAGAGACTTCTTTGCGCGAGACCGGGCATGCTT
GACGTCGTGCGGCGTCAAGAGAGCGACTACGCGGCCACTACCGCTGTTGC
TGCCGCTACTGCCGCTGGTGCTGTCGTGATTTTTGTGGCCGCCACCCGGC
GCTTGCTCGCCTCGCGTTGGCGTCGAGGGGATCACGGGCATCGGCGAGTC
CACACTCCTCCTCTTCCTCGCCGCGGTGGCCCGTTCCTCCAAGTAATCCC
GATTCCGAGCGCTTTGTTCGACGCTTCTTGTCTCAACGCCGCTGGCATCG
CCGTTGCTGCTGTGTACCGAAGCACTGGCGCATATGTCATGATTGCCTTT
GCTATCTCCCGCATTGCTGGGCGTGCTATGAGCGGCATGCCCACAACCGC
CTTCTCCGCGATCTGGTTCCATCGGCGACGATGATCGCTGGCCGAACCTG
TCGACTAAGACCAGGGTCTCGTTGTCGATCACAAGAGAAGGAGGGACGGA
ACGCGTTGCTGTGCGCCCCGCTTCTCCTTTCGCTCGTCCTCCTTCTTCGG
TCGCCCGCAAGCCGCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig82:254131..254747+

>mRNA_P-fluviatile_contig82.14819.1 ID=mRNA_P-fluviatile_contig82.14819.1|Name=mRNA_P-fluviatile_contig82.14819.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig82:254131..254747+ (Porterinema fluviatile SAG_2381)
ATGCTTGACGTCGTGCGGCGTCAAGAGAGCGACTACGCGGCCACTACCGC
TGTTGCTGCCGCTACTGCCGCTGGTGCTGTCGTGATTTTTGTGGCCGCCA
CCCGGCGCTTGCTCGCCTCGCGTTGGCGTCGAGGGGATCACGGGCATCGG
CGAGTCCACACTCCTCCTCTTCCTCGCCGCGGTGGCCCGTTCCTCCAAGT
AATCCCGATTCCGAGCGCTTTGTTCGACGCTTCTTGTCTCAACGCCGCTG
GCATCGCCGTTGCTGCTGTGTACCGAAGCACTGGCGCATATGTCATGATT
GCCTTTGCTATCTCCCGCATTGCTGGGCGTGCTATGAGCGGCATGCCCAC
AACCGCCTTCTCCGCGATCTGGTTCCATCGGCGACGATGAATGCTTGACG
TCGTGCGGCGTCAAGAGAGCGACTACGCGGCCACTACCGCTGTTGCTGCC
GCTACTGCCGCTGGTGCTGTCGTGATTTTTGTGGCCGCCACCCGGCGCTT
GCTCGCCTCGCGTTGGCGTCGAGGGGATCACGGGCATCGGCGAGTCCACA
CTCCTCCTCTTCCTCGCCGCGGTGGCCCGTTCCTCCAAGTAATCCCGATT
CCGAGCGCTTTGTTCGACGCTTCTTGTCTCAACGCCGCTGGCATCGCCGT
TGCTGCTGTGTACCGAAGCACTGGCGCATATGTCATGATTGCCTTTGCTA
TCTCCCGCATTGCTGGGCGTGCTATGAGCGGCATGCCCACAACCGCCTTC
TCCGCGATCTGGTTCCATCGGCGACGATGA
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