mRNA_P-fluviatile_contig81.14792.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig81.14792.1
Unique NamemRNA_P-fluviatile_contig81.14792.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: D7FRV6_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV6_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 9.700e-36
Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:   67 MSQPTRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLYPHQVNPVE 315
            M+QP+R A LGLYKGLRRQ  LL DYNYREYALRRAR+GFE+AR F+PE+A AAF+KGQRELE++RRQAAISQLYPHQ + +E
Sbjct:    1 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTSVME 83
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A7S2P523_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P523_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.800e-14
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   79 TRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLYPHQVNPVE 315
            T+ A   LY+ L R+A  L DYN+R YA+RR +KGFE+ RN +  +  AA E G+R+L++L+RQ+ I Q+YP   + +E
Sbjct:   29 TQPAVKSLYRSLAREAKRLSDYNFRTYAIRRVKKGFELNRNLAGLEINAAIEDGKRQLDMLKRQSTIGQMYPGATSVME 107
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A0G4IIG7_PLABS (Complex1_LYR_dom domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIG7_PLABS)

HSP 1 Score: 69.7 bits (169), Expect = 2.020e-13
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   76 PTRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLYPHQVNPVE 315
            PTR+A L LYK +RR  +  +D+N+REY +RRAR+ FE  R  +   A   +EKG  +L+V+RRQ+ ++++Y H  N  E
Sbjct:    6 PTRSACLALYKNVRRAGLQFKDFNFREYVVRRARERFEAGRAATGADAARLYEKGIEDLQVVRRQSTLNRMYAHGRNVAE 85
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A7S1G6K1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6K1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.620e-12
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   82 RAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLY 291
            R+ A+ LY+   R+A   +DYN+REYALRRAR GFE  R  S + A AA  +G   LEVLRRQA IS LY
Sbjct:    7 RSQAISLYRSFVREAKGFKDYNFREYALRRARAGFEENRAASGDAAAAALAEGNAALEVLRRQALISSLY 76
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: W7TGY8_9STRA (Complex 1 LYR protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGY8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.440e-12
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   61 DSMSQPTRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLYP 294
            D  + P+R   LGL++ L RQA  L DYN+R YA RR   GF+  R+ S E+A   +  G + LE+L+RQA IS LYP
Sbjct:   14 DMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYP 91
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A1G4IP04_9SACH (LADA_0A05622g1_1 n=1 Tax=Lachancea dasiensis TaxID=1072105 RepID=A0A1G4IP04_9SACH)

HSP 1 Score: 61.2 bits (147), Expect = 5.370e-10
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   67 MSQPTRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFS-PEQAGAAFEKGQRELEVLRRQAAISQLYPHQVNPVE 315
            M  P+R+  L LYK + + A    +Y+YR Y LR+A+ GF + R+   PE    AF   QREL VL+RQ+AISQ+Y      VE
Sbjct:    1 MPAPSRSQVLALYKQIIKNASNFNNYSYRNYFLRKAKTGFRVTRDLKDPEAVEEAFVSAQRELGVLKRQSAISQMYTFDKQVVE 84
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A060T5A5_BLAAD (ARAD1C04026p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T5A5_BLAAD)

HSP 1 Score: 60.5 bits (145), Expect = 7.450e-10
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   91 ALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFS-PEQAGAAFEKGQRELEVLRRQAAISQLY 291
            AL LYK L R +  +  YN+R+YA+RR R GF   RN S PEQ      KG  +LEVLRRQ+AIS++Y
Sbjct:    5 ALTLYKQLLRYSTRMASYNFRQYAVRRTRDGFLSNRNLSDPEQIRQEIAKGWEQLEVLRRQSAISRMY 72
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A1Y2GLY9_9FUNG (Complex1_LYR_dom domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLY9_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-9
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   82 RAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFS-PEQAGAAFEKGQRELEVLRRQAAISQLY 291
            RA  LGLY+ L   +     YN+R+YA+RR R GF  A+N + P++  A   K Q++LEV++RQA ISQLY
Sbjct:   11 RAQVLGLYRNLLHYSSRFAAYNFRDYAIRRTRDGFHAAKNETDPDKIQALIHKAQQQLEVVKRQAFISQLY 81
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BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A1X2HNS0_SYNRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HNS0_SYNRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.690e-9
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   79 TRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEM-ARNFSPEQAGAAFEKGQRELEVLRRQAAISQLY 291
            TR   L LY+   R    L  YN+REYA+RR++ GF   A    P +  A  EK QR+LEV++RQA ISQLY
Sbjct:    6 TRTQVLSLYRDFLRYGNKLSAYNFREYAIRRSKDGFRAHANEAEPSKIQALIEKAQRDLEVVKRQAVISQLY 77
[Close]
BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Match: A0A2C9KVK4_BIOGL (Complex1_LYR_dom domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KVK4_BIOGL)

HSP 1 Score: 58.9 bits (141), Expect = 4.080e-9
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   64 SMSQPTRAAALGLYKGLRRQAVLLRDYNYREYALRRARKGFEMARNFSP-EQAGAAFEKGQRELEVLRRQAAISQLY 291
            SM+ PTR   L LYK + R+   + DYN+R YALRR R  F+  +N +  EQ     +K  + LE+L+RQA +SQLY
Sbjct:    6 SMAAPTRTTVLTLYKQILREGKKVTDYNFRMYALRRTRDAFKENKNVTDLEQMQLLTQKAIKNLEMLKRQATVSQLY 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig81.14792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV6_ECTSI9.700e-3675.90Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A7S2P523_9STRA8.800e-1445.57Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4IIG7_PLABS2.020e-1343.75Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1G6K1_9STRA2.620e-1255.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
W7TGY8_9STRA4.440e-1247.44Complex 1 LYR protein n=1 Tax=Nannochloropsis gadi... [more]
A0A1G4IP04_9SACH5.370e-1044.05LADA_0A05622g1_1 n=1 Tax=Lachancea dasiensis TaxID... [more]
A0A060T5A5_BLAAD7.450e-1052.94ARAD1C04026p n=1 Tax=Blastobotrys adeninivorans Ta... [more]
A0A1Y2GLY9_9FUNG2.300e-947.89Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1X2HNS0_SYNRA2.690e-948.61Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A2C9KVK4_BIOGL4.080e-945.45Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig81contigP-fluviatile_contig81:417744..418946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D7FRV6
Preferred nameLYRM4
KEGG koko:K22069
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016226,GO:0016604,GO:0019866,GO:0019898,GO:0022607,GO:0031090,GO:0031163,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044571,GO:0051186,GO:0070013,GO:0071840,GO:1990221
EggNOG free text desc.metallo-sulfur cluster assembly
EggNOG OGsKOG3801@1,KOG3801@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-23_004100.1
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.5538664-CDS-P-fluviatile_contig81:417743..4179381622817278.5538664-CDS-P-fluviatile_contig81:417743..417938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 417744..417938 -
1693571884.399783-CDS-P-fluviatile_contig81:417743..4179381693571884.399783-CDS-P-fluviatile_contig81:417743..417938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 417744..417938 -
1622817278.5667431-CDS-P-fluviatile_contig81:418808..4189461622817278.5667431-CDS-P-fluviatile_contig81:418808..418946Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 418809..418946 -
1693571884.412411-CDS-P-fluviatile_contig81:418808..4189461693571884.412411-CDS-P-fluviatile_contig81:418808..418946Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 418809..418946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig81.14792.1prot_P-fluviatile_contig81.14792.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig81 417744..418946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig81.14792.1

>prot_P-fluviatile_contig81.14792.1 ID=prot_P-fluviatile_contig81.14792.1|Name=mRNA_P-fluviatile_contig81.14792.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
YLRSKHGDQSEKFQKKTRTNDSMSQPTRAAALGLYKGLRRQAVLLRDYNY
REYALRRARKGFEMARNFSPEQAGAAFEKGQRELEVLRRQAAISQLYPHQ
VNPVEMRGRW*
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mRNA from alignment at P-fluviatile_contig81:417744..418946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig81.14792.1 ID=mRNA_P-fluviatile_contig81.14792.1|Name=mRNA_P-fluviatile_contig81.14792.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-fluviatile_contig81:417744..418946- (Porterinema fluviatile SAG_2381)
TACCTGCGATCGAAGCACGGAGATCAATCAGAGAAGTTTCAGAAGAAGAC
TCGCACAAACGACAGTATGTCACAGCCCACGCGTGCCGCAGCGCTGGGGC
TTTACAAGGGGCTGCGTCGCCAAGCTGTGCTTCTCAGGGTAAGCTACGCC
GGCTCTGACACACACCACACACCTCCGTGTGTTGTGTGTGCGGGGGAGAG
CTTGTCATCCATGAGTGTTCACAAGAGTACACAGAGTTTGGCAGCGTGTA
AAAATATCTAAAGTAGATAAGGCCGCACATCGAGTGCTCTGTAGTCCTCC
GGCCGGCCTCTGTTGAAATGCGTAAGGAACACGCCGCCGCCTACTCTTTG
GGGGCGCGTTCGTTCGGCGGGCCTTTTCAACGATAAGCCAGCGTTCCTGC
ACACACCTCTCACTTGAAGGCGACGAGGGTACGGGATAATATTGCGTACG
CAGTGAGGGAAAGTGATGATTTTGCCCTTGTTGAGCAGGGGAGAGCTCAA
GGCTTTGTAGAGTCGCATGAAATTTCAGCCGTTGAGCATGTCCTGAACTC
GGCCCTCTCCCAGTGCCGCCTCCCCACACCCTTGAAATCGTCGGTGTGAC
TAGTCGCACTCCTTACCCGATGCATCCCCAGCTGGTAATATTACCTGCTA
CATCAATCGTTTCGGTGGTTCAACGTCAATCGTGCCAGTGGTTCGTGGCA
CCTGGTGTGTCAGCGTCAAACACCGAAGCAGGGATCCTGCGCAAGAGTTG
AACACGGTGATTGCTCACTGACTTCGTATGCGGATGAGGGGAGCGGGACG
GGGGGAAGGGGAGTCAACTCCGTAACAAGCATCAGCACTGTAGCATAGTA
TTCGGGTTCCGTCGGGTTTGTGTAGGGCTTGGTAGGAGCAGACAAACAAA
GGTCGACTCTTCCCGAAACTTTTCAGTTCCGCGGGATACTGATCGGGCAT
TTGGTTGACTTCGACTTGTCCCCTCTTTGGCCAATCTCCCTGTTCTGCTG
ACGTTCAGGACTACAACTACCGAGAGTACGCCCTGAGACGAGCCAGAAAG
GGGTTTGAGATGGCCAGAAATTTTTCACCGGAACAGGCCGGGGCGGCCTT
CGAGAAGGGGCAGCGGGAGCTCGAGGTCTTGAGAAGACAGGCGGCGATCA
GCCAGCTGTACCCCCACCAGGTAAACCCCGTCGAAATGCGTGGTAGATGG
TGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig81:417744..418946-

>mRNA_P-fluviatile_contig81.14792.1 ID=mRNA_P-fluviatile_contig81.14792.1|Name=mRNA_P-fluviatile_contig81.14792.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig81:417744..418946- (Porterinema fluviatile SAG_2381)
TACCTGCGATCGAAGCACGGAGATCAATCAGAGAAGTTTCAGAAGAAGAC
TCGCACAAACGACAGTATGTCACAGCCCACGCGTGCCGCAGCGCTGGGGC
TTTACAAGGGGCTGCGTCGCCAAGCTGTGCTTCTCAGGTACCTGCGATCG
AAGCACGGAGATCAATCAGAGAAGTTTCAGAAGAAGACTCGCACAAACGA
CAGTATGTCACAGCCCACGCGTGCCGCAGCGCTGGGGCTTTACAAGGGGC
TGCGTCGCCAAGCTGTGCTTCTCAGGGACTACAACTACCGAGAGTACGCC
CTGAGACGAGCCAGAAAGGGGTTTGAGATGGCCAGAAATTTTTCACCGGA
ACAGGCCGGGGCGGCCTTCGAGAAGGGGCAGCGGGAGCTCGAGGTCTTGA
GAAGACAGGCGGCGATCAGCCAGCTGTACCCCCACCAGGTAAACCCCGTC
GAAATGCGTGGTAGATGGTGAGACTACAACTACCGAGAGTACGCCCTGAG
ACGAGCCAGAAAGGGGTTTGAGATGGCCAGAAATTTTTCACCGGAACAGG
CCGGGGCGGCCTTCGAGAAGGGGCAGCGGGAGCTCGAGGTCTTGAGAAGA
CAGGCGGCGATCAGCCAGCTGTACCCCCACCAGGTAAACCCCGTCGAAAT
GCGTGGTAGATGGTGA
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