mRNA_P-fluviatile_contig81.14775.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig81.14775.1
Unique NamemRNA_P-fluviatile_contig81.14775.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig81.14775.1 vs. uniprot
Match: A0A6H5L838_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L838_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.620e-28
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 MVWGSLPSRVTRVGLEVGLRCARTGIGRNCGRHTKRGVGMLSTATKAPFPEVNFTVSESLASPILADLPLLHVAFPLVCSEPEGDDDGDGR 273
            MVWGSLP RVTRV ++ GLRCARTG  R+ GR+ KRG G LSTA K P P++ F V    A P+L DLPLL ++  L C EPEGDDDGDGR
Sbjct:    1 MVWGSLPPRVTRVAMQAGLRCARTGSRRSGGRYAKRG-GFLSTAAKVPLPDITFDVESEPALPLLGDLPLLLISQSLACPEPEGDDDGDGR 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig81.14775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L838_9PHAE1.620e-2862.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig81contigP-fluviatile_contig81:224610..228099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000370.1
Exons4
Model size1211
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig81.14775.1prot_P-fluviatile_contig81.14775.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig81 224610..227164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817276.1185877-CDS-P-fluviatile_contig81:224609..2246891622817276.1185877-CDS-P-fluviatile_contig81:224609..224689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 224610..224689 +
1693571879.0706778-CDS-P-fluviatile_contig81:224609..2246891693571879.0706778-CDS-P-fluviatile_contig81:224609..224689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 224610..224689 +
1622817276.128808-CDS-P-fluviatile_contig81:225876..2259341622817276.128808-CDS-P-fluviatile_contig81:225876..225934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 225877..225934 +
1693571879.0794914-CDS-P-fluviatile_contig81:225876..2259341693571879.0794914-CDS-P-fluviatile_contig81:225876..225934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 225877..225934 +
1622817276.1378736-CDS-P-fluviatile_contig81:226311..2264051622817276.1378736-CDS-P-fluviatile_contig81:226311..226405Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 226312..226405 +
1693571879.0884356-CDS-P-fluviatile_contig81:226311..2264051693571879.0884356-CDS-P-fluviatile_contig81:226311..226405Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 226312..226405 +
1622817276.1469514-CDS-P-fluviatile_contig81:227120..2271641622817276.1469514-CDS-P-fluviatile_contig81:227120..227164Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 227121..227164 +
1693571879.097998-CDS-P-fluviatile_contig81:227120..2271641693571879.097998-CDS-P-fluviatile_contig81:227120..227164Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 227121..227164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817276.1591454-UTR-P-fluviatile_contig81:227164..2280991622817276.1591454-UTR-P-fluviatile_contig81:227164..228099Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 227165..228099 +
1693571879.1086078-UTR-P-fluviatile_contig81:227164..2280991693571879.1086078-UTR-P-fluviatile_contig81:227164..228099Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 227165..228099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig81.14775.1

>prot_P-fluviatile_contig81.14775.1 ID=prot_P-fluviatile_contig81.14775.1|Name=mRNA_P-fluviatile_contig81.14775.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=92bp
MVWGSLPSRVTRVGLEVGLRCARTGIGRNCGRHTKRGVGMLSTATKAPFP
EVNFTVSESLASPILADLPLLHVAFPLVCSEPEGDDDGDGR*
back to top

mRNA from alignment at P-fluviatile_contig81:224610..228099+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig81.14775.1 ID=mRNA_P-fluviatile_contig81.14775.1|Name=mRNA_P-fluviatile_contig81.14775.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3490bp|location=Sequence derived from alignment at P-fluviatile_contig81:224610..228099+ (Porterinema fluviatile SAG_2381)
ATGGTATGGGGATCACTTCCCTCCAGGGTTACGCGCGTGGGTCTGGAGGT
GGGCCTGCGCTGCGCTCGAACAGGCATAGGGTGAGAGCGCGAGCTGCATT
TTAGGTTGCGGACAACAGAGTAAGCGCGCTAAAGCAGGTTTCGAGCCGAG
CGTGGCCATCGCTTGCTTGTACTGCTATAATCCATCGTGTACTGCATGCA
CATCTCTTTCTATTCTTCACGCGCACTACCTCTTCCACCGTGGTGTGTGA
AATTATCAGCATCGCTGTCCCTCAGCAATATTGCACTCCTAGTAGCCACT
GCTGTAGTGCGTTCCAAAGCACGTGTATCTATCACGGTGCGCCGGGCAAC
TCGCGTGGAGGGATGGGTGTGCAACCCGTGCACTGGAAGTCCTTCGCGTG
ATTATAGCAAGTAAAAATGTCGCTAATCTTGCGACGGGAATTTCTTGATG
CGCTGACTCTACAGAACACACACATCTGCTCGCGTCTCCGCTGTGCTGGT
GGAAACATGTGACGAGATATTTCTTGAGCTCTGAAGGCCATCATCGTACC
GCTGATAAGGCGCATTGCGTGCGCTGGCTCAAACGTAACCATACCAACAG
CCGGAAATCTCGGAGCTAGGATGTCGAAAGTGTGACCAGTTCGCGCTCCC
TTCCTTGCCCGTAAACTAAGTCGGCACCTTGATGGTTTGTACGCTCCGCT
GCCGCGACGATTCCCCACTCCCCTGACAACCGTTACACTATTAGTGGTCA
TCCCTATCCTTCGTGAAGCGTCATCTCTTTATTTTCAACCTTGTTTCGAT
ATCCTCGCTTGCTCACAATCTTGTAAGCCACGCTCGGTAACTTTTGGTGT
TGTGCAGGAATGGGGTGATGTTGGAGGGGTGGTTCTTCGAGCCGAATCCC
GGATGGTGGTGCTGTGCGCGGACGGTCGTCTTGAGCAGCGTCGCGATCAG
CATTTCTGACGCGTCCATGGGAGATAAAAGATGCACCGAAATCCGCAGGT
TCAGGGCCAAAATTGCTTGATTAATCCACCGAGGCGTTGTCTGAGTTAAG
GCAGCACTTCCACCGCATCGCGTGGTATCCATACCCCGACTTGCCTTGAC
CACACGGTGCACGACGTCCCCTGCAATCTTGACCAGGATCAACGTAGGTG
CCGCCAGTTTGTACGCGAAACCTAAAAAGCGGATAGGTTACGCGGGGTCC
CGCTGTGATTTCGACTCTCATCTCCTACCACCACTTCCTTGCCATGTTAA
ACGTTTCCATACCTCAGGCGGAACTGTGGGCGACACACGAAGCGCGGGGT
TGGGATGTTGTCAACAGCCACGAAGGTGAGCACAACAGCGGTCAATTTTC
TCCCTAATAACGCATTCGCTTGCAATGCCAGTGCACAGCCTGCTTCTCGG
CGGCCTTGCGGCCACGTCAGTTATTTGAGTTACGACCTTCGAGTACAAGT
ATCATGGCATTTGTGTTCGGTCCTACACCTCTAGTGCCGCTTGCCGCCCT
CAACAGGAAAGTTGTCTCGAATGGATCTACATTCCACCCTCCAATGGCTC
TTGATGGGCGCACGCATGAACGGGGGGCTTCGGGGAGCGATCCCAGTTCA
TGTGAGGGAGAGCCGCTCCGAATGTACAATGCAGTGCAATCGTAGAGAGG
ATTTGACGCTCTTCACCCCGCTCCTACCGTTCTCATCACCGCAAACCGCC
AGGCGCCGTTTCCGGAAGTCAATTTCACCGTGTCAGAGAGCTTAGCGTCG
CCAATCTTAGCGGATCTACCGCTGCTGCACGTCGCCTTTCCCCTAGGTGA
GAAACGCGGGCAACAGCGCCATACCCTACTTGTTCACAGATTCGTGGCTG
GGGGTTAGTTTTTCGCGAGTCTTCGAGCGTCGGAGATGGCTGGCGAATCC
CACCCAGTGAAGCTTGCCGAGAAGCTTGTACCACTCTAAGGCCAACATCC
CGAAAGGCAGGAAACGTGACGAATTTCCTTGTGTTGCTCTTTGGGGCTGA
TGCGCAGCGTTTTGTTTGCCGCAACATGAGCTCGGCCGATTGTCCCACCG
CCGTGCGAGTTCGTCCTGGTGTCCACTCGGCGAACTCGTGGCGGAGTCCG
CCTTGCGTCACGTACAACGAGCTCTCACAACCTTTTGGCGCAACTCCCCT
TGCCAACTTCCCTACGCCAAGCTGGCTCGAGGTGCCTGCGCCGCTCTTGC
GCTATTTGCGCGAACAAGCTGCTGGTGTCCTCTGGGCGTACAAATCCAAT
CCCGTCGCACTTCCTCATGCCATGCTTAACAGCTCCCGGCGGTTTCCCTC
CTGATTCACGTCTTTCGCAGAGAACACGTCGGTCTCTTTGATTATCAAAA
TGTTTCTTAAGCGTACACTCCCGAGGCAATCTGTTATCCGATTCAGATAC
ACTTAACTCTGATTTCATACTAATCAAGTAAAGAAATGTCCCCCCCACTT
AAATTACCAATCAATCGCCCACGTGTCGCATGCATCCCGGTCTCTTCCTA
TCTTGTGGCAGTTTGTTCCGAGCCGGAGGGAGACGATGACGGCGACGGGC
GTTGACGTCGGTCCGCTCGGCTTCTTTTCTTCACCCGATGGAGTAGACTC
TTGGGTTTGCAGGAAGCGGGGCGGATACAAGGATTAGGTTGGTGTTTCGA
GGTACATGCCGTCGCTCGGTCGCTTCGCCCGACCGAAGAGACTTTCGGTC
GTGAGCGGGGCGGATATGTCGATCGAGCACTGCATTTAGGTTACACTAAA
GCATCGGTGTGTTCGGTTAGCGGACCCATGCTCGCGAGCAGCTCAGCTGT
GTTCACTCAGCATCCTACGCTGACCCGTACAAATGGCAGCTCATAGATGT
TTGCGAAAACTGCCGGCGGGGGCTGGTGTAAGTGAAGGTTTTTCGTTGCG
AACCATTTAGGTCGTGAATGGCATGCTGTGTGCCCGTGACACGGGTGATC
TTACTGTTGAAAGTCACCCAGATATTTGCTTTTTGGCGACGTTGTCCGGT
CTCGGTTTCAGCCTTGCAATCTATGTTTTCAGCCTTGCAACCTGTGTAGT
AAAGAGTCTAAAATATGCAATGGAGGCGACGATTTGTGTCCACTGCACCT
AGGTTCAGCTGAACAAAGGTATTTAGCCGGCACGACACACACGGCCGGGA
TAGAGCCTTCTCTTGCTTCTTCCCGGTCGGCTAATCATCAGGCAATCTCT
CTACCGCTTTTCTTTTGAGTGCTTTCAGTCCGTCGAACGAGCACGAAGGA
CAACAGTGCGTGCTACACGGGTAAAACGCAGTGAACGGGCCAGGCGAGAT
AATACCTGGCATCAGAGGCGAATGCTTTCTTGCCGTTTCCACTAACCAAT
TTTCTTCGGACAATCGACAAGAAGAGTAGTGCATGCATGTGAACGATCCG
CTTTGCATTTGTACGTCCAATCATCGGAATTTGGACTGTCCCTCACACAG
CGAAATGAATACGTGCTGTTCAAGGATGTAAACTGCTGCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig81:224610..228099+

>mRNA_P-fluviatile_contig81.14775.1 ID=mRNA_P-fluviatile_contig81.14775.1|Name=mRNA_P-fluviatile_contig81.14775.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=552bp|location=Sequence derived from alignment at P-fluviatile_contig81:224610..228099+ (Porterinema fluviatile SAG_2381)
ATGGTATGGGGATCACTTCCCTCCAGGGTTACGCGCGTGGGTCTGGAGGT
GGGCCTGCGCTGCGCTCGAACAGGCATAGGATGGTATGGGGATCACTTCC
CTCCAGGGTTACGCGCGTGGGTCTGGAGGTGGGCCTGCGCTGCGCTCGAA
CAGGCATAGGGCGGAACTGTGGGCGACACACGAAGCGCGGGGTTGGGATG
TTGTCAACAGCCACGAAGGCGGAACTGTGGGCGACACACGAAGCGCGGGG
TTGGGATGTTGTCAACAGCCACGAAGGCGCCGTTTCCGGAAGTCAATTTC
ACCGTGTCAGAGAGCTTAGCGTCGCCAATCTTAGCGGATCTACCGCTGCT
GCACGTCGCCTTTCCCCTAGGCGCCGTTTCCGGAAGTCAATTTCACCGTG
TCAGAGAGCTTAGCGTCGCCAATCTTAGCGGATCTACCGCTGCTGCACGT
CGCCTTTCCCCTAGTTTGTTCCGAGCCGGAGGGAGACGATGACGGCGACG
GGCGTTGATTTGTTCCGAGCCGGAGGGAGACGATGACGGCGACGGGCGTT
GA
back to top