mRNA_P-fluviatile_contig81.14761.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig81.14761.1
Unique NamemRNA_P-fluviatile_contig81.14761.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig81.14761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig81contigP-fluviatile_contig81:13321..14071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817274.0391796-CDS-P-fluviatile_contig81:13320..134031622817274.0391796-CDS-P-fluviatile_contig81:13320..13403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 13321..13403 +
1693571873.9658582-CDS-P-fluviatile_contig81:13320..134031693571873.9658582-CDS-P-fluviatile_contig81:13320..13403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 13321..13403 +
1622817274.0503821-CDS-P-fluviatile_contig81:13987..140691622817274.0503821-CDS-P-fluviatile_contig81:13987..14069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 13988..14069 +
1693571873.9764118-CDS-P-fluviatile_contig81:13987..140691693571873.9764118-CDS-P-fluviatile_contig81:13987..14069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 13988..14069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig81.14761.1prot_P-fluviatile_contig81.14761.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig81 13321..14069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig81.14761.1

>prot_P-fluviatile_contig81.14761.1 ID=prot_P-fluviatile_contig81.14761.1|Name=mRNA_P-fluviatile_contig81.14761.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
RGSSASTSAARRPRGWGSRSEARRPDVQQPDIVASRTRPNPPRKRKYTMT
SEAAD
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mRNA from alignment at P-fluviatile_contig81:13321..14071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig81.14761.1 ID=mRNA_P-fluviatile_contig81.14761.1|Name=mRNA_P-fluviatile_contig81.14761.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=751bp|location=Sequence derived from alignment at P-fluviatile_contig81:13321..14071+ (Porterinema fluviatile SAG_2381)
AGGGGGAGCTCCGCGAGTACCTCGGCTGCTCGACGTCCAAGGGGCTGGGG
AAGCCGATCAGAAGCAAGACGTCCCGACGTGCAGTTAAGAAACTTGAACG
GGTTTTTCTTGACTTGAGCGGGAAGGCAAAAGTGCCGAGTATCGGTGGGA
AGTATTACACTCTCATCGTCCGGGACGATTTCACAAGGTGGACGCGCGTT
TATTCCCTGCGGCAAAAGCCGGATTCGGCGGAAGCGTTCGAGGATTATCT
TAATGAGAACCGTGCGAACGGCGCTCCCTCCGCTGTCATGGTGGTTCACA
CAGGCAACGGGAGAGAATTCGTGTGTGGGAAGTTCGAAGAGGTGTGCCGC
AAATACTGCATCCAACAGGAGTTTTCCCCTGCTCACAGCCCAGAATACAA
CGGCGTAGCAGAGCGAGCTCTGGGGTTAATCAAAGATGCAGCGACGGCAG
GACGAATTCAAGCGTCGGTGGTGTACCCCGACGCACCAACCTACCCCTCT
TTGTGGGCCGAGGCGGTAAGCTGGGCTTGCAACGCCCTCAACTGCACCGC
GACGACTGCTAACCCTGACAGGAAGTCCCCCTATGAGATGTGGCATGGCC
ACCCGCCCCCGAGGGGGGCGACGCATCCTTTCCTGAGACCTGCCGTTCGA
CTTGGCTGGCTTGACAGACAGCCCGACATCGTCGCGAGTCGAACTAGGCC
AAACCCCCCAAGGAAACGCAAGTACACCATGACTTCCGAGGCCGCCGACG
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig81:13321..14071+

>mRNA_P-fluviatile_contig81.14761.1 ID=mRNA_P-fluviatile_contig81.14761.1|Name=mRNA_P-fluviatile_contig81.14761.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig81:13321..14071+ (Porterinema fluviatile SAG_2381)
AGGGGGAGCTCCGCGAGTACCTCGGCTGCTCGACGTCCAAGGGGCTGGGG
AAGCCGATCAGAAGCAAGACGTCCCGACGTGCAAGGGGGAGCTCCGCGAG
TACCTCGGCTGCTCGACGTCCAAGGGGCTGGGGAAGCCGATCAGAAGCAA
GACGTCCCGACGTGCAACAGCCCGACATCGTCGCGAGTCGAACTAGGCCA
AACCCCCCAAGGAAACGCAAGTACACCATGACTTCCGAGGCCGCCGACAC
AGCCCGACATCGTCGCGAGTCGAACTAGGCCAAACCCCCCAAGGAAACGC
AAGTACACCATGACTTCCGAGGCCGCCGAC
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