mRNA_P-fluviatile_contig80.14735.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14735.1
Unique NamemRNA_P-fluviatile_contig80.14735.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: D7FQ68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ68_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.520e-77
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSD T VTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPK+RLARAGLQ KKETSRKQIKEAKNR KKIRGTGRRIAKHKAKKAAK
Sbjct:    1 MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 135
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: A0A7S2US90_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US90_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.150e-58
Identity = 103/131 (78.63%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            VT+RTRKFIRNALL+RRQM+VD+IHPG ANV K+EL E +AK  +V+D TTV+LFGFRT FGG KSTGFCLIYDSVED KKFEPK+RL R GL  K ETSRKQIKEAKNR KKIRGTGRRIA+HKAKKA K
Sbjct:    6 VTIRTRKFIRNALLSRRQMIVDVIHPGRANVPKSELQERLAKMHKVNDTTTVSLFGFRTAFGGNKSTGFCLIYDSVEDAKKFEPKFRLVRLGLAEKTETSRKQIKEAKNRGKKIRGTGRRIARHKAKKANK 136
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: W7U6J8_9STRA (40S ribosomal protein S24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6J8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.700e-55
Identity = 99/131 (75.57%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            VT+R+RKFIRNALLARRQM++D++HPG ANV KTEL E+I+   + + P T  LFGFRT FGGGKSTGF LIYD++ED KKFEPK+RL RAGL  KKETSRKQIKEAKNRAKKIRGTGRR+AKHKAKKA K
Sbjct:    7 VTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: F0YI50_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI50_AURAN)

HSP 1 Score: 185 bits (469), Expect = 3.650e-54
Identity = 96/135 (71.11%), Postives = 111/135 (82.22%), Query Frame = 1 
Query:    1 MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            MS+ VT+RTRKF+RN LL R+Q V+D+IHP  ANV K+EL +MIAK  +V+D   ++LFGFR  FGGGKSTGFCLIYDS E  KK+EPKYRL R G+  KKETSRKQIKEAKNR KK+RGTGRRIA HKAKKAAK
Sbjct:    1 MSAPVTIRTRKFVRNPLLQRKQFVLDVIHPDRANVPKSELQDMIAKSHKVADTQLISLFGFRNKFGGGKSTGFCLIYDSAEAAKKYEPKYRLIRNGIVEKKETSRKQIKEAKNRKKKVRGTGRRIANHKAKKAAK 135
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: A0A7S2FWG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FWG9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.290e-52
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:    4 SSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            SS VT+RTRKFIRNALL+RRQM+VD+IHPG ANV K+EL E++ K    +D + + L GF THFGGGK+TGFC IYD++E  KKFEPK+R  R GL  K ETSRKQIKEAKN+ KKIRGTGRRIA HKAKKAAK
Sbjct:    4 SSTVTLRTRKFIRNALLSRRQMIVDVIHPGRANVPKSELQELLGKMHSCNDMSAIFLSGFLTHFGGGKTTGFCCIYDNIEAAKKFEPKFRCIRNGLMEKTETSRKQIKEAKNKRKKIRGTGRRIAAHKAKKAAK 137
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: F0WPH7_9STRA (40S ribosomal protein S24 n=3 Tax=Albugo TaxID=65356 RepID=F0WPH7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.490e-52
Identity = 96/131 (73.28%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            VTVRTRKF+RN LLAR QMVV++IHPG ANVSK EL E + K ++V D  TV L+GFRT FGGGKSTGF LIYDSV D K+FEPKYRL R GL  K E+SRKQIKEAKNR KKIRG GRRIA+HKA KA K
Sbjct:    7 VTVRTRKFLRNPLLARGQMVVEVIHPGRANVSKAELQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: W4GRV1_9STRA (40S ribosomal protein S24 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=W4GRV1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 8.920e-52
Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            VTVRTRKF+RN LLARRQM+VD++HPG  NV K EL E +AK ++V+D  TV L+GFRT FGGGKS+GF LIYD+V D KKFEPKYRL R GL  K E SRKQIKE+KNRAKK+RG GRRIA+HKA KA K
Sbjct:    7 VTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: D0N827_PHYIT (40S ribosomal protein S24 n=14 Tax=Phytophthora TaxID=4783 RepID=D0N827_PHYIT)

HSP 1 Score: 177 bits (449), Expect = 3.520e-51
Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            VTVRTRKF+RN+LLARRQMVV++IHPG  NV K EL E I+K ++V D  TV L+GFRT FGGGKS+GF L+YD+V D K+FEPKYRL R GL  K ETSRKQIKEAKNR KK+RG GRRIA+HKA KA K
Sbjct:    7 VTVRTRKFLRNSLLARRQMVVEVIHPGRPNVPKAELQEKISKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: A0A3R6ZAQ3_9STRA (40S ribosomal protein S24 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZAQ3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.000e-51
Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 1 
Query:    1 MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK 405
            MS+ VTVRTRKF+RN LLARRQM+VD++HPG  NV K EL E +AK ++V+D  TV L+GFRT FGGGKS+GF LIYD+V D KKFEPKYRL R GL  K E SRKQIKE+KNRAKKIRG GRRIA+HKA KA K
Sbjct:    1 MSAPVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKIRGVGRRIARHKANKANK 135
[Close]
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Match: A0A0P5B3P7_9CRUS (40S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5B3P7_9CRUS)

HSP 1 Score: 177 bits (448), Expect = 5.130e-51
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:   13 VTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRVSDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPKKETSRKQIKEAKNRA-KKIRGTGRRIAKHKAKKAAK 405
            VTVRTRKF+RNALLARRQM+V++IHPG  NV K EL E +AK ++V D TTV L+GFRT FGGGKS+GFCLIYDS+ D K+FEPK+RL R GL  K ETSRKQIKEAKNRA K  RG GRRIA+HKA KA K
Sbjct:    7 VTVRTRKFLRNALLARRQMLVEVIHPGRPNVPKAELQEKVAKMYKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSINDAKRFEPKHRLVRQGLADKVETSRKQIKEAKNRALKNPRGVGRRIARHKANKANK 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ68_ECTSI2.520e-7796.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US90_9STRA1.150e-5878.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U6J8_9STRA1.700e-5575.5740S ribosomal protein S24 n=2 Tax=Monodopsidaceae ... [more]
F0YI50_AURAN3.650e-5471.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2FWG9_9STRA3.290e-5270.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0WPH7_9STRA4.490e-5273.2840S ribosomal protein S24 n=3 Tax=Albugo TaxID=653... [more]
W4GRV1_9STRA8.920e-5270.9940S ribosomal protein S24 n=6 Tax=Saprolegniaceae ... [more]
D0N827_PHYIT3.520e-5170.9940S ribosomal protein S24 n=14 Tax=Phytophthora Ta... [more]
A0A3R6ZAQ3_9STRA4.000e-5171.1140S ribosomal protein S24 n=2 Tax=Aphanomyces inva... [more]
A0A0P5B3P7_9CRUS5.130e-5171.9740S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:214835..220334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.6e-62
Seed eggNOG ortholog2880.D7FQ68
Preferred nameRPS24
KEGG rclassRC00002,RC02878
KEGG koko:K01008,ko:K02974,ko:K17338
KEGG ReactionR03595
KEGG Pathwayko00450,ko01100,ko03010,map00450,map01100,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001889,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0031090,GO:0031099,GO:0031100,GO:0031369,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2004@1,KOG3424@2759
EC2.7.9.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein S24e
Ec32 orthologEc-01_007240.1
Exons4
Model size1207
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14735.1prot_P-fluviatile_contig80.14735.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 214835..219535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817271.205285-CDS-P-fluviatile_contig80:214834..2149031622817271.205285-CDS-P-fluviatile_contig80:214834..214903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 214835..214903 +
1693571857.164359-CDS-P-fluviatile_contig80:214834..2149031693571857.164359-CDS-P-fluviatile_contig80:214834..214903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 214835..214903 +
1622817271.2184553-CDS-P-fluviatile_contig80:216456..2165251622817271.2184553-CDS-P-fluviatile_contig80:216456..216525Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 216457..216525 +
1693571857.1777413-CDS-P-fluviatile_contig80:216456..2165251693571857.1777413-CDS-P-fluviatile_contig80:216456..216525Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 216457..216525 +
1622817271.2296405-CDS-P-fluviatile_contig80:218685..2188411622817271.2296405-CDS-P-fluviatile_contig80:218685..218841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 218686..218841 +
1693571857.1854956-CDS-P-fluviatile_contig80:218685..2188411693571857.1854956-CDS-P-fluviatile_contig80:218685..218841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 218686..218841 +
1622817271.2409365-CDS-P-fluviatile_contig80:219421..2195351622817271.2409365-CDS-P-fluviatile_contig80:219421..219535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 219422..219535 +
1693571857.1931775-CDS-P-fluviatile_contig80:219421..2195351693571857.1931775-CDS-P-fluviatile_contig80:219421..219535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 219422..219535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817271.251209-UTR-P-fluviatile_contig80:219535..2203341622817271.251209-UTR-P-fluviatile_contig80:219535..220334Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 219536..220334 +
1693571857.202523-UTR-P-fluviatile_contig80:219535..2203341693571857.202523-UTR-P-fluviatile_contig80:219535..220334Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 219536..220334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14735.1

>prot_P-fluviatile_contig80.14735.1 ID=prot_P-fluviatile_contig80.14735.1|Name=mRNA_P-fluviatile_contig80.14735.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
MSSNVTVRTRKFIRNALLARRQMVVDIIHPGVANVSKTELGEMIAKKFRV
SDPTTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKYRLARAGLQPK
KETSRKQIKEAKNRAKKIRGTGRRIAKHKAKKAAK*
back to top

mRNA from alignment at P-fluviatile_contig80:214835..220334+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14735.1 ID=mRNA_P-fluviatile_contig80.14735.1|Name=mRNA_P-fluviatile_contig80.14735.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5500bp|location=Sequence derived from alignment at P-fluviatile_contig80:214835..220334+ (Porterinema fluviatile SAG_2381)
ATGTCTTCCAACGTCACCGTGCGGACACGGAAGTTCATCAGGAATGCTCT
GCTGGCGCGGAGGCAGATGGTGAGCTCTTTTTCAGGGATCGATCTCGGCT
GTGTGGTGGGGCTTGTGGGGCCAGCAAATTTGGGGGGGCAAGGGCGAGCG
GGGAGGTCCACCGCCGATGGCGTGTCAAAGCGGAGGCCGGGGGGTGTTGG
AAACTCATCGCTTCCCGATCTTGTTCCAGATTAGGGGAAGGACAGCCGCC
ATCATCTCTCTCATTCACTGACCCTGCTACGTCGTAGCGCTCGTGATTGT
TCACTGGTGGACGAGGTGGCCGCCCTCCCGCTGCGGCGTGTGCGCGCTAC
CAACCACGGGAGGACTCATCCCGTTTCGTTCCTCATCAATAAGAGCGATC
TGGCCATGAAGCAGTCCAATGAACAGAGTCTTAAGATAAGGCGTGGTTTT
GTTCGGCCGATGTTGATGCGCTTGTTGATTCGTTGTTTTCGCCTGCAAAA
AACGATACCGCCTCTCTCCTCACCACTTCCTACACAAAGTCTGTCTTGGC
CGACATGGGGCCACTGTAGGTAAAATGGCAATTTTAGGGCAGATAAGGTC
TACGGCCATCATCTACACAACTTGCGTTAGACTAAGGAGAATTGTGGGTG
TTAAATGCGGATGCATGTGGTGTGGGTCGTTGTGCATGCCTTACACCAGG
CACTTGCAGAAGGCAGAAGTAACTGCGTGCTAGCGAAGACATCACCCAGC
CCGTCTCCGCAGCAACAACCGCAGTTCGGTCCGCTATCTACCATCGCAGC
TGCCTGGGGTCGTCAACAACAACAGCAGCTGTAGCAGCACCACCACCATC
ATCGCGTGTGACGCATATATGCTATTTATGAGGTGCATAAACTTCGATAA
CTTTTGTGGACATTCCTCAGGATTTTCGAGCGAATGGCACTTTCTTCTTT
CTGGGTCTCTTCACCGACAATACTGAGTCTGTCGTTTGAGAAAGAGCGGC
CCTCAACGAGCTCTGAAACGAAGATCGTCATCTCTAACTGAGTGGTTTCC
GAAGCAGGGGAGTAGGCAGTCTTGGCGGGCTTAGAAGTGATTTCTTTCAG
GGGGGCCGGGAGACGTGAAATTCAAAATCCACACCCACGAGTGCACGAAG
CCTTTTCGTTTCTCCTCCGTCGTCGTGTCTCCTTTGCACCGTGTCGGCAA
CACTCTCCTCGGAGTAGATGCTGGGGGGCGGGTCACGCTTTTCTCGAGCT
GCGCCGAGCAACGAGCACAAATTCTTGAACCTCTACCCGACTGATTTGTT
CGCCCATGTGGCGCTCGCCCGCTCGTCGAGTTAGGCACTCTCTGGTCGCC
CTCTCTAGTCTCCCAAACCTGAGTTTCCACGCTGCTGTCCATGTCGCCGC
TGCTCGGTAAGTACCACAAACCCAGACTTGGCTCCGCTCTCCCAAAGATG
AGGGGCGTGGAGATGGGGGGTTGTCAACCGCCGACGCACGATGTCGCCAC
GAAGCGCTGCGTCGTGATGCTCAACGAAAATACTGTAATGCATCGTTCTC
CGCTGTGTGTGCTGTTCCTGACCCCACCCGCCGCAACCGCGTGTGCATCC
GTTTTTTCCCGTCACACCAAAGGTCGTGGACATAATCCACCCTGGTGTGG
CCAACGTTTCCAAGACCGAGCTCGGAGAGATGATCGCGAAGGTCGGTGCC
ACACAAATCTGTGTTGCAGCTCATGTTCAGATGCCGGTGGGGAGGTGGGT
ATTTCACGAAGTCGATAGACACGCGTGCCCGGCGATCAGAGGTGCGTGTC
CGTAACACCATTCAGCTTAATCGCTTCTTTGTGGTAACTGGAACTTGCCG
TGGGGCATTTCTCGGGGTGAACGGATTTTTTTTTTGCACGGTAGAGCCTC
TGCTCGTGTATGTCATGGGCATGCAAAACGAGGCTGTCGGTGGTTATCCA
CCAGGCACAGTGAAAGGCGAAACCTCGGCGTACGCGCCTTCTCATACGCG
CGTACCCCTGTCTGCGCACGATACGCGCCAATATGTAGGCGCCGTTTTTG
TTGCAGGGCGAGCATATCACCGCCTCTAATCAAACCCGGAGCGACTCTCG
CAATGTTGGTGTTGGTGTAGGGTTTCGACGGTGATACGGCGTTGCCTTCG
CTCCCACCCTCCGCTTGTTTGACCGCAACCCTTTTTCGAGTGGCCGTTTC
CATGTCGCCCGACGTTGCGGTGCGAAGCAAGCGCAACTGCCGCACGGAGC
GCATTGTACTTTTTGAGGCGATGGGAGGCCAAGGGGAAGGGGGCGGACGC
GTGAAGTGCACTTGGGATCGGTGTCGACTGCGTGCCCACGATGTGTCGCA
CAACTGGCGCGAAAAGCAACAATATTGGAGCACAAAATTGTCCTAAAACG
CTCATCAACGGATGCCAATCGATATTCAAACAGTGGCGGACGATGCATTC
GTTGTCAAGCTGGTCGAAAGATGTCATCGCCAAAGGTCATTTTATTGGTC
TGCGGATCGTCGTTGTCGCCCTTCTGTTTCATCAGAGTCTTTTTGCTGTC
ACAGCGGAGGTTTTGTTTCGCGAGCACTTGTTACTGCACAACCAAGGACA
GATAGGGCATGAACTTACCTTCCAAGGTCTCTAAAATTCTCAAGTTGGTT
CCAGTTGGTCCGACCTCCAGTTTGGTGTTGTGGGTGTTGCAGGGTACTTG
GAAAACCGTTGGCTTTGATCTTAGTCTCCATAATTTAGGGCTAAATCAAT
CGTCATTTACTGCCTGAATGTATGCAGGTTTGGTGTTTTGTGACATATCA
GGACCAGTCCATTGTAGCTCTCGTGTCAGTGTGGCGTTGTGTTGACGGGG
TTCTCCGATTGCCGTGCTCGTGACCACAATGACGATAAGCGATAGTCTTA
GTCGCAAACACTGAGGACTAATCAGCGCCATTCTCGAGTGGTCCCGAGCG
GCGACGTTGCATTCAATTTTATTTTGCGTTGATGAGTAGCTTTGCGTTGT
GTGGTGGGGTGTTAAGGTAGAGTTGCGCTTTGAAGCACCACAGCTTCTAT
CAGGTATTTTTTCCAGGAAGCATCTAGGATGAAGGGTTACACACGCTACG
GCCATTGGCCGGGATTGGCGGTGTGTGGTTCGACCACGCGTCGGCTTTTC
AAATTGCATTCCTTGTTATTTGCGCGGGACGACTCCTGCGAGGCGTCGAA
AGTTGCCTCGGGTGGGACCACAATGACGACAAGCCTAATCTTAGTCGCAA
ACACTGAGGACGAACTAAGCGTCATCCATTTCTCGAGTGGTCTCGAGCGA
GCGACTGTACAACGTGGTACGTTTGGACCAGTAAATCGGGAGCACTTTTC
ATTTCATGTTGCATGGTGTTGCAGGGAGGCAGTGGTAGACAGCACGCACT
TGGACCACGATGACGACAAAGCTAATTCTTAGTCGCAAACACTGAGGACG
ATTTAAGCGTCATCCATTTCTCGAGTGGTCTGGGAGCGGGTTGTTCCATC
TTTCGTCTTCACATACAGCAGTTGCCTCCGTGCCTGGCGCCCTGATTTTT
ATGTATCCGTCGTTTCTCGGCCAGCTTGCGTTAAACCGGCTAAACTGGTC
GGGTTTAAAATGTGTCTGACCATGTAGATCTTGATGGTTTGGAGCGTAGG
CTGCATGCTACGGTTTCGAGCAGTGCGTCGGGACTGTCGACATAGCGACC
ATTGTCATTCGGCCTCTCCTTGTCCCTTGCACGACGTCCAACCACAAGCC
CGGGAGAATGATGCTAGTTTCCCCCCTCCTCCTCGGCTGCTTCATCATTT
TGTCCCTCCGTTTTTTTTCTCCTGGTGTTCCGCTCTCGATCATGCAAGCA
GAAGTTCCGCGTGTCGGACCCGACGACTGTGACCCTGTTCGGCTTCCGAA
CTCACTTCGGTGGGGGCAAGAGCACCGGCTTCTGCCTCATTTACGACAGC
GTTGAGGACATGAAGAAGTTTGAACCCAAGTACCGCCTCGCACGCGCGGG
TCTCCAGGTGGGCGGGAGCGCGTGTTCTTCGTAGATTCACTCGAGTGTAC
GTGTCTGCGTGTTTTGTGATGTTGGCCCAATGCCTGCCCAAGATGCGGTT
GTCACGCGTCTAAACATTCGCGCTAGCACGTTCTGGAGCCGCCAGAACGA
CTCGCGAAAGGCGTTTGTCCGCAGCCCCCGTCGCTTGCGCGCATGTGTGC
ATGCATGTCCTCGGGCAGTGGGATTGCTATGTGCAAAGAGGACGGAGGGG
GTCGGACAGCGGGCGTGCGGCCGGTGAAGCTTCATGCTAATGCGAAACAA
AGCTTTGAAGGACTCCCTAAATTGTCATCGTGGCCACACATTTGGGCTGT
TTTGGATTTTGGCGTACCACAGCGATCGATTTTAGCCCGTTTGTTTTTTG
ATTGCATCGTTTTTGGTCGCACGTTCCATCGGTGCAGATGCTTTTTGAAT
GGTTCGATCCTCGTGTTCTTCCTCCAAATCGAAACCACATCCAGTGACAA
GCTGCTTGTGCTGTTGCTCAACCCGTTCCATCTTGCGGCCGCAAAATGCC
TCTCTACATTGTTCGCTCGTGCTTTCTCGCCTCTCAGCCCAAGAAGGAAA
CCTCCCGCAAACAGATCAAGGAGGCCAAGAACAGGGCGAAGAAGATCCGC
GGTACCGGTCGCCGTATCGCCAAGCACAAGGCCAAGAAGGCCGCCAAATA
GACGTCGAATTGACGGACGCGTCACTTGCCCACCGCCAGCCAAGTCCCCG
TTGTTGTCCCCCTTCCTTCGGTTGTACGTCCAACGTGCCGCACAGAGTGT
CCACGCGCCTCTTCTACTTTCCCCGTGTGGCGTTCATTGGTTGTTACGCT
CATGGATGAGGGGTCGGGTTTCGAATTTTTGGCGGCAGGAGCAAACGGAG
TCTTCTTTCGGCGCATTGGGCTCTTGCGTCGATGAATGACTCAGTCAGTC
CCCTCCTGTCCGCGGACATGGCCAATTGGTGCTTTGTGCGATTTTTGATC
TGCCGCTCGCTTCAATTTCGGAAGAAAAACAAAAAATGCTCACTGAAACA
TAAGGGTGCGCATTTTGCGCGATCGGATCGCGCGGACGGTTCCGTTGTGG
AATGAAGCGCGGTGGTGTATGCGGCCGGCCGAATCGCGCGCACGGTTCCG
TTGTGGGATGAAGCGCGGGGGTGTATGCGGCCGGCCTGCATGGCTTCACA
CTGCATGGCTTCACACGCAGCAAGCTGCAAGCGGCGCAGCGCCGTCTACA
TGCAGACCTCTGCTGATCGCAGTCGTTCCCTCCCTCCGACTTTCACAAGG
GTACATCTCTCGCAAGATACAATCTGCCCCCGGAGGGTGGGTTTGTCCAT
TTCGAATTGCCCACCAAGACGACCTTTGGCCTTGCGTTGGCTGCGTTGTT
TGTTGCTGGTTCATGGACAGTGCATGGAGTACGTGGGCGCCAATCTCATC
CTCCTATTGCCTTGCCTTGGAAAAGATGTGCAAGAACGACGACCCCAAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig80:214835..220334+

>mRNA_P-fluviatile_contig80.14735.1 ID=mRNA_P-fluviatile_contig80.14735.1|Name=mRNA_P-fluviatile_contig80.14735.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig80:214835..220334+ (Porterinema fluviatile SAG_2381)
ATGTCTTCCAACGTCACCGTGCGGACACGGAAGTTCATCAGGAATGCTCT
GCTGGCGCGGAGGCAGATGATGTCTTCCAACGTCACCGTGCGGACACGGA
AGTTCATCAGGAATGCTCTGCTGGCGCGGAGGCAGATGGTCGTGGACATA
ATCCACCCTGGTGTGGCCAACGTTTCCAAGACCGAGCTCGGAGAGATGAT
CGCGAAGGTCGTGGACATAATCCACCCTGGTGTGGCCAACGTTTCCAAGA
CCGAGCTCGGAGAGATGATCGCGAAGAAGTTCCGCGTGTCGGACCCGACG
ACTGTGACCCTGTTCGGCTTCCGAACTCACTTCGGTGGGGGCAAGAGCAC
CGGCTTCTGCCTCATTTACGACAGCGTTGAGGACATGAAGAAGTTTGAAC
CCAAGTACCGCCTCGCACGCGCGGGTCTCCAGAAGTTCCGCGTGTCGGAC
CCGACGACTGTGACCCTGTTCGGCTTCCGAACTCACTTCGGTGGGGGCAA
GAGCACCGGCTTCTGCCTCATTTACGACAGCGTTGAGGACATGAAGAAGT
TTGAACCCAAGTACCGCCTCGCACGCGCGGGTCTCCAGCCCAAGAAGGAA
ACCTCCCGCAAACAGATCAAGGAGGCCAAGAACAGGGCGAAGAAGATCCG
CGGTACCGGTCGCCGTATCGCCAAGCACAAGGCCAAGAAGGCCGCCAAAT
AGCCCAAGAAGGAAACCTCCCGCAAACAGATCAAGGAGGCCAAGAACAGG
GCGAAGAAGATCCGCGGTACCGGTCGCCGTATCGCCAAGCACAAGGCCAA
GAAGGCCGCCAAATAG
back to top