mRNA_P-fluviatile_contig80.14722.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14722.1
Unique NamemRNA_P-fluviatile_contig80.14722.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig80.14722.1 vs. uniprot
Match: D7FQK1_ECTSI (BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK1_ECTSI)

HSP 1 Score: 525 bits (1353), Expect = 7.330e-180
Identity = 278/397 (70.03%), Postives = 323/397 (81.36%), Query Frame = 1 
Query:    1 MARRKASMVLDAVRDQVDFLKRASRQNAWGIKVAIEEPASG-FTQSEDIVVSIFIPYCESGAEWEVVIDADVPERCPDLIPLPATEADAAKGFTHGMHEAYRLYRLNALGSLQKWDLFRWPGSLAALALDIKHLRRKHEILKLEHSPLSSAATFHLDFLRDREEEVEVLVSRSWVRLAFPLWPDPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPREADDEGPLFVYGRAGFRLRMEWTQVDGNRPGVYVRVVFPPDAQGLSRGFRQPSWSSDTLLSDFLPRVQAAVVKLWSARKKLVATFAARHSVLEYDAQDFTLVHLFMKVKVDNFVHLKVLRIDIGPDFPEFPPQMTLCDALSDSSRPLDRRDYMYSPRWDAERMATALYAHAVEAL 1188
            M R K ++VL AVRDQ+D LKR+SRQNAWGIK +++EP +G F QSEDIVVS+FIPYCESGAEWEVVID D PERCPDL+P P+TE D  +GFT GMHEAY  YRL +L SL+KWDLFR P SLAALALDIK LRR HEI KLE+SPL+SA +FHL +LRDR+E++E+LVSR+  RLAFPLWPDP A   XXXXXXXXXXXXXXXXXXXX            +A+ EGP+FVYGRAG R+RMEWTQVDGNRP   VRV+FP +AQGL+ GFRQPSWSS+T L D+LPR QAAVV  WS RK LVA  A RH+VLEYDAQDFT++HLFMKVKVDN + L++LR+DIGPDFP  PPQ+TLCD+LS+    LDRR+Y YSPRWDA RMAT LY HAV++L
Sbjct:    1 MVRTKGNVVLSAVRDQIDCLKRSSRQNAWGIKASLQEPVTGGFAQSEDIVVSVFIPYCESGAEWEVVIDGDAPERCPDLVPFPSTEGDVNRGFTQGMHEAYNTYRLASLESLKKWDLFRRPSSLAALALDIKQLRRNHEIQKLENSPLASAMSFHLGYLRDRQEDIELLVSRAGARLAFPLWPDPTAAAAXXXXXXXXXXXXXXXXXXXX------------DAEGEGPMFVYGRAGVRVRMEWTQVDGNRPPD-VRVLFPQEAQGLTMGFRQPSWSSETTLGDYLPRAQAAVVTPWSERKNLVAMLAKRHNVLEYDAQDFTMLHLFMKVKVDNLIFLRILRVDIGPDFPNNPPQLTLCDSLSEKCWSLDRRNYRYSPRWDAARMATELYTHAVDSL 384
[Close]
BLAST of mRNA_P-fluviatile_contig80.14722.1 vs. uniprot
Match: A0A7S3YK41_HETAK (BRISC and BRCA1-A complex member 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK41_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.930e-17
Identity = 88/398 (22.11%), Postives = 148/398 (37.19%), Query Frame = 1 
Query:  184 EWEVVIDADVPERCPDLIPLPATEADAAKGFTHGMHEAYRLYRLNALGSLQKWDLFRWPGSLAALALDIKHLRRKHEILKLEHSPLSSAATFHLDFLRDREEEVEVLVS--RSWVRLAFPLWPDPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPREADDEGPLFVYGRAGFRLRMEW---TQVDGNRPGVYVRVVFPPDAQGLSRGFRQPSWSSDTLLSDFLPRVQAAVVKLWSARKKLVATFAARHSVLEYDAQDFTLVHLFMKV----------KVDNFVHL----------------------------------------------------KVLRIDIGPDFPEFPPQMTLCDALSDSSRPLDRRDYMYSPRWDAERMATALYAHA 1176
            +W +V+D+      PDLIP              G+ + Y+++ L  + SL+ WD     G L  LA+DI++  R+H++ K+            LD L+ RE+ V+VLV      VRL FPLW +                                     +E  ++ P F+       L + +   +   G     +V V FP   +    GF  P W + T + D+LP V+    + W+ R+++V   A R + LE+DA D++ +H+ ++V           +    H+                                                    ++++      FPE  P + + D  S     +  + Y Y+PRW  E+MA  LY  A
Sbjct:    2 QWVLVVDSKS-TLPPDLIPQQVP----------GVDDIYQVFDLGEIESLESWDSLGEDG-LYLLAMDIRNCYRRHQVKKVREMGFQEVENT-LDALQHREQSVDVLVDPMEGTVRLRFPLWDETT---------------------------------EAKEDLNKAPSFMVDGCAICLDLTYRIESLTAGRSTPDHVEVSFPHRMKTTKNGFILPPWQAGTSMFDYLPLVRRQAARRWAFRREVVRVLAKRCASLEFDAVDYSSIHILVQVTTGETYSEEGSMSTSPHIADEKEEAVSEEPNKNIKGKLGGMFRKKTPKGQEPTKSLGLTTXXXXXXASLVRIIQFVFTHTFPESVPGIIIHDNFSQQYWSVGTQRYNYNPRWAPEQMAEELYKFA 353
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQK1_ECTSI7.330e-18070.03BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocar... [more]
A0A7S3YK41_HETAK2.930e-1722.11BRISC and BRCA1-A complex member 2 n=1 Tax=Heteros... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:104507..111344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.2
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog69319.XP_008545987.1
KEGG koko:K12173
KEGG Pathwayko03440,map03440
EggNOG free text desc.Brain and reproductive organ-expressed protein (BRE)
EggNOG OGs28N8P@1,2QUU0@2759,38GM2@33154,3BE1W@33208,3CYAB@33213,3SNGP@50557,41ZVR@6656,46J8Q@7399
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008980.1
Exons7
Model size2037
Cds size1203
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14722.1prot_P-fluviatile_contig80.14722.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 105341..111344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.7305276-UTR-P-fluviatile_contig80:104506..1053401622817269.7305276-UTR-P-fluviatile_contig80:104506..105340Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 104507..105340 -
1693571850.9431405-UTR-P-fluviatile_contig80:104506..1053401693571850.9431405-UTR-P-fluviatile_contig80:104506..105340Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 104507..105340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.7416272-CDS-P-fluviatile_contig80:105340..1055591622817269.7416272-CDS-P-fluviatile_contig80:105340..105559Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 105341..105559 -
1693571851.7198107-CDS-P-fluviatile_contig80:105340..1055591693571851.7198107-CDS-P-fluviatile_contig80:105340..105559Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 105341..105559 -
1622817269.7515187-CDS-P-fluviatile_contig80:106055..1062791622817269.7515187-CDS-P-fluviatile_contig80:106055..106279Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 106056..106279 -
1693571851.9273112-CDS-P-fluviatile_contig80:106055..1062791693571851.9273112-CDS-P-fluviatile_contig80:106055..106279Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 106056..106279 -
1622817269.7653623-CDS-P-fluviatile_contig80:106886..1072001622817269.7653623-CDS-P-fluviatile_contig80:106886..107200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 106887..107200 -
1693571851.9396462-CDS-P-fluviatile_contig80:106886..1072001693571851.9396462-CDS-P-fluviatile_contig80:106886..107200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 106887..107200 -
1622817269.7789412-CDS-P-fluviatile_contig80:107508..1075501622817269.7789412-CDS-P-fluviatile_contig80:107508..107550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 107509..107550 -
1693571851.9525058-CDS-P-fluviatile_contig80:107508..1075501693571851.9525058-CDS-P-fluviatile_contig80:107508..107550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 107509..107550 -
1622817269.7894692-CDS-P-fluviatile_contig80:108214..1083481622817269.7894692-CDS-P-fluviatile_contig80:108214..108348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 108215..108348 -
1693571851.971-CDS-P-fluviatile_contig80:108214..1083481693571851.971-CDS-P-fluviatile_contig80:108214..108348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 108215..108348 -
1622817269.8022323-CDS-P-fluviatile_contig80:108782..1089561622817269.8022323-CDS-P-fluviatile_contig80:108782..108956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 108783..108956 -
1693571851.9827106-CDS-P-fluviatile_contig80:108782..1089561693571851.9827106-CDS-P-fluviatile_contig80:108782..108956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 108783..108956 -
1622817269.8128095-CDS-P-fluviatile_contig80:111248..1113441622817269.8128095-CDS-P-fluviatile_contig80:111248..111344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 111249..111344 -
1693571851.9937205-CDS-P-fluviatile_contig80:111248..1113441693571851.9937205-CDS-P-fluviatile_contig80:111248..111344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 111249..111344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14722.1

>prot_P-fluviatile_contig80.14722.1 ID=prot_P-fluviatile_contig80.14722.1|Name=mRNA_P-fluviatile_contig80.14722.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=401bp
MARRKASMVLDAVRDQVDFLKRASRQNAWGIKVAIEEPASGFTQSEDIVV
SIFIPYCESGAEWEVVIDADVPERCPDLIPLPATEADAAKGFTHGMHEAY
RLYRLNALGSLQKWDLFRWPGSLAALALDIKHLRRKHEILKLEHSPLSSA
ATFHLDFLRDREEEVEVLVSRSWVRLAFPLWPDPAAAAAAAAAAAEARVE
GEAGAAGTARGGGGAGAESPREADDEGPLFVYGRAGFRLRMEWTQVDGNR
PGVYVRVVFPPDAQGLSRGFRQPSWSSDTLLSDFLPRVQAAVVKLWSARK
KLVATFAARHSVLEYDAQDFTLVHLFMKVKVDNFVHLKVLRIDIGPDFPE
FPPQMTLCDALSDSSRPLDRRDYMYSPRWDAERMATALYAHAVEALWNPA
*
back to top

mRNA from alignment at P-fluviatile_contig80:104507..111344-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14722.1 ID=mRNA_P-fluviatile_contig80.14722.1|Name=mRNA_P-fluviatile_contig80.14722.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6838bp|location=Sequence derived from alignment at P-fluviatile_contig80:104507..111344- (Porterinema fluviatile SAG_2381)
ATGGCGCGCCGAAAAGCGAGCATGGTGTTGGATGCTGTGCGGGACCAAGT
CGACTTCCTGAAGCGCGCTTCCCGACAAAATGCGTGGGGTATAAAGGTGG
AAATAAACTAGAACAGTTGCTCGAACTTTGGCTCACAATACAGCATGTTG
TGGCACGCTGTCTGCGACACACCTGTCTGTGGGGCAGGCGTACAAGTGAA
TTACCTCTTTCTCGAGGGTAATTCCCAAGAGCTGTTATGCTTGCGACGTG
TGCTTATTGCTTTGCAATAGCGACTCCCTACAATTTTGTGCCTCTTGTGG
GAGCGGGCGGCTCCATTTTTCAAACTTCGCCGCTTCCTCCGCTCCAGGAG
GTGGCAATTGCCAAGCGTCAAGCCCGCGGAGATGAAGCAAGAAACACTTT
GGGCGCGTGTGCAATGGAAATTTGTTCAGCGCATGTAGTGCAAACGTGCG
CTATTTTGGCAATTGAATCCGTGAATGTTGGAATGATCTGGGCCGCCACT
CCTGTCTGAAAAACGATGGGTGATCACCTATCACCTCTGCGGGGGCATGT
GCATGATTTTACTCCGAACTGCACCCCTTCGCGGCATATCCTGTGCGCTC
GGATACAGCACTCAGATATCCCATGAGGCCAGTCGACGGGACCCTGACCG
AACCATTTCCCTTGCACCTAGCGGAGACTTCGTGTGTGCTTGTCGAGGGC
GTATTGCTTCGATGGGCCTAAAACGGTCGTCGCTAAATTGCAACCACCTC
ATGCAGAACGCGCCCGCACGATGAAAACTCCAACTTTGCATTTTGGACGA
GGCTCTCGGCGTGTTTTCTGCTCACAATGAGCACCTGTTCTTATTTCTCA
GTCCCCACGTCACGTCGATGGTCGCTCCCGCTGGTCCTCGGCGAGGCAGT
TGCCCGCCACGACATGTTTCGTTGTGTCCTCGAAATGGCCGTAAAGAATC
ATACCCCTTCTTGTCAAGTCTGACAGCATTGAAGGACAGCGTTTTCAAGG
ACATCGCCATGTTCCGCACTGCACATTGTGGGACGCAGCTCGCACCAAAC
ACATCGAGCGGGGGCACGCGAAAAATTGCACGCGCACCATATCCCTCTCG
GCGAAGTATTTGTGGGGGGCACTCTCCAGTGTCCGGCAGATGAACTTGTC
CACCACTCAGTCAGCGCCTGAGTGGTCTAGTAGATAAGGCCATTTGACGG
ACAAAATATATGCTTGTGGGACCGTTCAAATCTGTAGCGGCACTGGGTCA
CCTTATATGTGGGTTCTTGTTCTTGGCACGCCGGAAGTGAGCACCTTTTC
TTACGGCCGGGTTGTTCAATTTTGAAAATTATTATGCTTAAGTTCTCAAC
ACCCAAGTTCGTTTGTGCGGGCGCGTGCTCTATGCTACAAGCATGCAAAG
GGGACAACTGGCAGGACTCGCATCTGTGGAACTTTTCCGGAAGTCGTGTC
CCTGTATAACCAGAGCTCTCCAATTGCAATTGGTGTAATCTTGCGTCAGT
ATTTTCAAGCTCGTCGTGCCCAGGATGTGCTCGGGGTGCTACAGGGTGAA
GCAACCTGCGGCTGTCTCGGCACTTGCTCCATCCCCCCACGACGCCGCTT
TGTTCCCACTACGAATTGGCTGTCGTCAACGATTTCGTCCGTTGCGAAGG
ATATAGAACGCTGCCTTGGTCACAAAGGTTTCCTGCACCCGGGAAAACAG
CGAAGTAAGGCGCGGGATAACAATTAGAAGTCGCGATTCCATGGCAACGC
CGCCGTCGAGTGTCAGCTGAATACCTGGCGATATCCTTCCCCGGAGACGC
AGGCCGGTCTTTTTACACGGTCAAGAAACAGAAGCATACATAAAGCAAGA
GTGCATGCAGGCGTGATATTATCCATATTTTTCGGCTCTGTTACCCACTT
ATCGTAGTCTCAACCTTCCCTCTCCGTCTCCTTCCCCCGCACCAGTCCCT
CCCCACATCTTCACAGCCCTCTTTCACTCTATTCGCACGCGATCGGGTTT
TCATTAACTTTTATCAAGACCAGTGTCAGAAAAGTATCTTCTTTTGCACG
TAGAGGCATTTTCTTGACGAGCTCTCATCATAACATCGATTTCGACTCGG
GTTCGTTTCCTCTGGTCGCCGCGTGAGGCGCTTAGTACCAGTCTTGCGGG
CCTTCTACTCGTTCTGAAGTAATTTATGTCAACCACACAAATTTCAATTT
CACCGGTTTCTGCCAACCTATCCACGCGGGAACAGCTCATCACGACAAGG
TTTGCGATGTTCAAGGTCTGTCATTGGCTCAGTAAGGCCAAAACAACCCC
CACAAAACGAGTAACATCATGAAAAATGCGTGGCGAGAACAACATGACGA
CCGCCACAGCCGCTACCAACACCACCACCGACACACAGGTGGCCATCGAA
GAACCGGCGAGCGGGTTCACCCAGAGCGAGGACATCGTTGTAAGCATCTT
CATCCCGTATTGCGAATCCGGCGCGGAGTGGGAGGTAGTGATCGATGCGG
ATGTGCCGGAGAGATGTCCGGACCTCATCCCGCTGCCCGCCACAGAGGCG
GACGCCGCCAAGGTGGGATTTTTTTGCTTCGTAGGTGGTGTGCTACTTTC
TAGAGTTGGCAAGAGCGGGAGGGAGTGCTCGAACGGTGAGTTCGTGATAA
ATGGTGGTGGCGGCAGTTGTCGATGGGGGCGTGGAATTCCTCCAACCTTG
TTGTTCCCTTCACCCATTTGGAATCTGCTCCCCCGGCTCGCGCCGTCCGC
GTGCGGACGATCGACAGAGTGTACACAGGGTGCTCCATGGGTGGTGGCTT
TGTTCGGCGGCGTCGCACTCTCACTTTTGAGCAGTATTCTTCTGGTTGAT
TCAGTTGTTTCCGCTGTCGCTGCTTTTGCTGCTTCTTCCTTCTTCGCCGG
AGCTTCACCGCTCACGCCTCGCTCGAAGCGTACAACTTGTAAATCGCGAG
TTTGTTGTCGTCTGTTCTGCCGCGCTCTTTTCTTCCTTTTTGCCAGGGCT
TTACTCACGGCATGCACGAGGCGTACAGGTTGTATCGCTTGAACGCGCTC
GGCAGCCTGCAGAAGTGGGACCTCTTTCGGTGGCCGGGTTCCCTGGCGGC
CCTCGCGCTGGACATTAAGCACCTTCGCCGGTGAGTGCCGTAGTCTATGG
TGTTGATTTCTTGCTTTTGCTGCTTGCGTGTCCAGCGTCAGCGGCTGCCT
CGTGTGTTTGGTCAGGCAGCGGCGGTGATGATCGCGGGTTTCTGGCGGGG
TTTGCCGCATGCCGTTTCTCCGTGCTCTCTTCCGTCGTGTGGGGTGTTGT
TGCGTCGCCTGCTTTCATTGCATGCGTCGGTGCGCCACGGATGCCGCGGA
GGTGGCACGGGCGGCGCGCACCGGGCCGACCGGGCTTGATCAGATCAAGT
CGGGTCAGGTCATCGCAGACCATCCTGTTGAGGTAAGGAGGACTATCCCC
TGAACCAAAGTAGTGAGCGCTGAACACTCTGGTTCAGGGGTTAGTCCTCC
TGACATCAACACATCCACGCAAAGCGATTACGCCGGTCGCCCTTGCTGAC
GCCGCATGTACTCGCCAGCGCCCCTTCCGCCAGTAATATGCAGCCATTAC
GGGTTGCAACAGGACCACGCACCACGTTCCGATGCGGACGCCGGATGATA
GTGTGTGCCGGTGCACGTGATAAATACACGGCGCTATTGCCATGCCTCGG
ATCAACATTCTGTGTCAGCCCCCCATATCCCTTCCCCCTCCCCAACCCCC
CTCTCCTGCCCCACTCGCCATGTCCTGGGGCCCCGCTCTCGCAGTAAGCA
CGAAATTCTGAAGCTGGAGCACTCGCCGCTTTCGAGGTGAGCGGGTTAAC
GCGTTTCGGTACGGCATAGCAAAGTTGCAGGCTCCAGGCACACAAGGGGT
GGAGGAGAGGGGAGGGGAGGAGAGGTGGTGGTCGTGTCTTACCCACCACC
GAAGTATGTAGCGTGCGCGTGTGTAGGTGTGATGGTTTTTTTCCATACAG
CGAACACCACGGAGCCGCCCGAAAGCAACAAAAAGCAACAGTTTGCATCA
CACCAATCGCTGTTCCAGTGACAGCATCCATTTTGCCCGTTGCCACCGTT
GACAATGTTTCTGTTCCGATTACTTGCTGCCTTCCTTCCGTCAGTGCGGC
CACGTTTCACTTGGACTTTCTGAGGGATAGAGAGGAGGAGGTGGAGGTGC
TCGTGTCGAGATCGTGGGTGCGGCTAGCTTTCCCTCTCTGGCCAGACCCG
GCTGCAGCAGCCGCAGCCGCAGCGGCAGCGGCAGAAGCACGGGTAGAAGG
AGAAGCAGGAGCGGCAGGAACGGCACGAGGAGGGGGGGGGGCAGGAGCAG
AATCACCGAGGGAAGCAGACGACGAAGGGCCGCTGTTTGTCTACGGTCGG
GCGGGATTTCGGCTGCGGATGGAATGGACACAAGTGGACGGGAACCGACC
AGGTGTGTGTCGAAGCGAAGCGACCGGTGGGCAAGGAGGGGCTGGGTGCG
ACGAAGAGGCCGCGAGGGGGCGTATCACTTCTCTTCCTCGATCCGTGTCA
CTCGCTCTGTCTTATGTGCGGACTGTGGCGCTCCTCCCCGGTACCAACGA
GCGGCAGGTGGGGGGCGGGAGGGGGGGGCGCACTCATTTTGTTGCTTGCT
TTCGTCATTTGACAATTGACCACGCGTACCTTTCGAGACGCTCGAGGGAG
GCGGGGAGCAGAGCGGGGGAAAGGGACGGCGGCTGCTGATTGGCACGCGC
CGCGGCCCAACCTTCTCTTGCGTCAACCCGACTACCGGTATCTCGTCAAA
TTGTTTCGCGATTGATCGGCACATCTTTGGCTTGTAAGTAGCCCTGACGT
TCAACACAGCCTAGGAATTGCCGGTGCGCAGTATTGCCCACAGCTGTAGT
GGCTTTTCAGTAGCTCCCGTATTGCGCCTCTCTCTGTTCACACATTCAGC
TTATTTGCACACCTGCCCCCGCTCCTCCTTCCCCGCCGACTGCTCTTGTC
GACAAACAAAAAACAAAACAATGATGAAAAACGCTCATGGACGATGGTGA
CGGCGCTGAAAAAAGACGTCCGAGTGGTGTTTCCCCCGGACGCACAAGGT
CTCAGCAGGGGCTTTCGACAGCCCTCTTGGAGCTCGGACACGCTGCTGAG
CGACTTCCTGCCGCGTGTGCAGGCGGCGGTGGTGAAGTTGTGGTCGGCGC
GGAAGAAGCTCGTGGCGACGTTCGCGGCGCGGCACAGCGTGCTCGAGTAC
GACGCCCAGGACTTCACGCTTGTCCACCTCTTCATGAAGGTCGGGTGGTC
CGTCGGTCGTGCCGGTATTGTTTTGGTGGAGGACAGAGGGCAGCGATGGC
AACGACTTCCTGACCCACGATCCGCTGTTTGAACACTACTTCGGCATGGG
GTAGTCATGTTTTGGCATTGTTTGTGATTCGGTTCTGTTGGTGTTGACAC
GTGTAGCCGGCCCATTTGCCTCTTCGCAACCATTTTCTTCCGGTTGCCCT
AAGGTTCCTCGAGTCATCACGCGGCGGTGGTTTGCACCTCCCCGAAAATT
GGGCAAGCGAGGACGCTGCTCCATTTGCGTTCCTCCGGCAGCCCACACGC
CGCTTGCAGTGGTCATGTTGTGGCCAGACCTGGCTTACTCAGAGCCCCCG
CCAAGTGTGTCAGTCGCTTTGCGATATCGGCCGGCAACACAGCTTGAACA
GACCCTCGCATCCAAGTGAATGAATTTGACACTTATCCTCCCTCCTTGCT
ACCTTTTTCGTCTTGGCGAACGCCACTTTCTTCAGGTGAAGGTGGACAAC
TTCGTCCACCTCAAGGTCTTGCGGATCGACATCGGGCCCGACTTTCCCGA
GTTCCCCCCGCAGATGACCCTGTGCGATGCTCTGTCGGATTCGTCACGCC
CGCTCGACAGACGGGATTACATGTACAGCCCACGGTGGGATGCAGAGAGA
ATGGCGACCGCTCTGTACGCGCACGCCGTTGAAGCGCTGTGGAACCCAGC
CTAGACAGTACCCTTCTTGTGTGTTGTTTCCTCCGATGTTGACAGTGAAA
ATCATCTTTGAATTTGCACGAATCTTCAAAACACACTATCATTATTACAT
TCTCCTTTTAAGTTTTTCTATTACCGGTTTGTCTTTTTCTGTTCCAAGGG
TGTCCGTCGTTTGCCGAGGAGTCAAGGTCGGCTGGTTCCTTGGCTCCCTT
CCAGCGTGAGGTTTGACATTGATTTCTAGCCTTTTTTGGAAGCGATGCTT
CGCGATGTTGTGTCCCTGTGCTGGCGACCTAGCTAAAAAAGCAACCTGGT
TTGCGCGGACGAACTCTCATCACGGGAGGCGTTGTTAAGTTGGTATTGAT
TTCGACTGTTTTCCTTGGTGTAAGCGAACTTTCGCGGCCAGATTTGCCTT
GTATCCTCCACGTTGCCCGGGATTTGTGCGGGCACGCGCCAGCCAACAGC
TGAACTCTCGCATTGAGAGGGTGCCATCGGGACGCACTTTTTGACAGCTA
CCTCTGCGGTTTTCGAAACAAGCCCCTGTCTAAACGAGAGCGAGATGAAG
TTGGTAGTTAATGGTGTTCAAATTCCGACAGGACTTTGTTGAAAGGATGG
GACCATTTGAGCACCTACTTGAATGTTGTCCGCGCTCAGGAAATCGTCGT
CGCTACGTGAAGTCGTGGAATATGAAGTCGGTTGTCTCTGCGCGTGATCG
CTGTCCTCGTGGCTCACCAGGAATGGATTCGGAGGGTGTCGCCAATCTGG
AAAAAATACACCATCCCCTCGTTCGCCTGGTGCTACTTAGCGTTAGCCTG
TTGCCGGGGCATTCTCTTAACCAACACATCGATCGACT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig80:104507..111344-

>mRNA_P-fluviatile_contig80.14722.1 ID=mRNA_P-fluviatile_contig80.14722.1|Name=mRNA_P-fluviatile_contig80.14722.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2406bp|location=Sequence derived from alignment at P-fluviatile_contig80:104507..111344- (Porterinema fluviatile SAG_2381)
ATGGCGCGCCGAAAAGCGAGCATGGTGTTGGATGCTGTGCGGGACCAAGT
CGACTTCCTGAAGCGCGCTTCCCGACAAAATGCGTGGGGTATAAAGATGG
CGCGCCGAAAAGCGAGCATGGTGTTGGATGCTGTGCGGGACCAAGTCGAC
TTCCTGAAGCGCGCTTCCCGACAAAATGCGTGGGGTATAAAGGTGGCCAT
CGAAGAACCGGCGAGCGGGTTCACCCAGAGCGAGGACATCGTTGTAAGCA
TCTTCATCCCGTATTGCGAATCCGGCGCGGAGTGGGAGGTAGTGATCGAT
GCGGATGTGCCGGAGAGATGTCCGGACCTCATCCCGCTGCCCGCCACAGA
GGCGGACGCCGCCAAGGTGGCCATCGAAGAACCGGCGAGCGGGTTCACCC
AGAGCGAGGACATCGTTGTAAGCATCTTCATCCCGTATTGCGAATCCGGC
GCGGAGTGGGAGGTAGTGATCGATGCGGATGTGCCGGAGAGATGTCCGGA
CCTCATCCCGCTGCCCGCCACAGAGGCGGACGCCGCCAAGGGCTTTACTC
ACGGCATGCACGAGGCGTACAGGTTGTATCGCTTGAACGCGCTCGGCAGC
CTGCAGAAGTGGGACCTCTTTCGGTGGCCGGGTTCCCTGGCGGCCCTCGC
GCTGGACATTAAGCACCTTCGCCGGGCTTTACTCACGGCATGCACGAGGC
GTACAGGTTGTATCGCTTGAACGCGCTCGGCAGCCTGCAGAAGTGGGACC
TCTTTCGGTGGCCGGGTTCCCTGGCGGCCCTCGCGCTGGACATTAAGCAC
CTTCGCCGTAAGCACGAAATTCTGAAGCTGGAGCACTCGCCGCTTTCGAG
TAAGCACGAAATTCTGAAGCTGGAGCACTCGCCGCTTTCGAGTGCGGCCA
CGTTTCACTTGGACTTTCTGAGGGATAGAGAGGAGGAGGTGGAGGTGCTC
GTGTCGAGATCGTGGGTGCGGCTAGCTTTCCCTCTCTGGCCAGACCCGGC
TGCAGCAGCCGCAGCCGCAGCGGCAGCGGCAGAAGCACGGGTAGAAGGAG
AAGCAGGAGCGGCAGGAACGGCACGAGGAGGGGGGGGGGCAGGAGCAGAA
TCACCGAGGGAAGCAGACGACGAAGGGCCGCTGTTTGTCTACGGTCGGGC
GGGATTTCGGCTGCGGATGGAATGGACACAAGTGGACGGGAACCGACCAG
GTGTGTTGCGGCCACGTTTCACTTGGACTTTCTGAGGGATAGAGAGGAGG
AGGTGGAGGTGCTCGTGTCGAGATCGTGGGTGCGGCTAGCTTTCCCTCTC
TGGCCAGACCCGGCTGCAGCAGCCGCAGCCGCAGCGGCAGCGGCAGAAGC
ACGGGTAGAAGGAGAAGCAGGAGCGGCAGGAACGGCACGAGGAGGGGGGG
GGGCAGGAGCAGAATCACCGAGGGAAGCAGACGACGAAGGGCCGCTGTTT
GTCTACGGTCGGGCGGGATTTCGGCTGCGGATGGAATGGACACAAGTGGA
CGGGAACCGACCAGGTGTGTACGTCCGAGTGGTGTTTCCCCCGGACGCAC
AAGGTCTCAGCAGGGGCTTTCGACAGCCCTCTTGGAGCTCGGACACGCTG
CTGAGCGACTTCCTGCCGCGTGTGCAGGCGGCGGTGGTGAAGTTGTGGTC
GGCGCGGAAGAAGCTCGTGGCGACGTTCGCGGCGCGGCACAGCGTGCTCG
AGTACGACGCCCAGGACTTCACGCTTGTCCACCTCTTCATGAAGACGTCC
GAGTGGTGTTTCCCCCGGACGCACAAGGTCTCAGCAGGGGCTTTCGACAG
CCCTCTTGGAGCTCGGACACGCTGCTGAGCGACTTCCTGCCGCGTGTGCA
GGCGGCGGTGGTGAAGTTGTGGTCGGCGCGGAAGAAGCTCGTGGCGACGT
TCGCGGCGCGGCACAGCGTGCTCGAGTACGACGCCCAGGACTTCACGCTT
GTCCACCTCTTCATGAAGGTGAAGGTGGACAACTTCGTCCACCTCAAGGT
CTTGCGGATCGACATCGGGCCCGACTTTCCCGAGTTCCCCCCGCAGATGA
CCCTGTGCGATGCTCTGTCGGATTCGTCACGCCCGCTCGACAGACGGGAT
TACATGTACAGCCCACGGTGGGATGCAGAGAGAATGGCGACCGCTCTGTA
CGCGCACGCCGTTGAAGCGCTGTGGAACCCAGCCTAGGTGAAGGTGGACA
ACTTCGTCCACCTCAAGGTCTTGCGGATCGACATCGGGCCCGACTTTCCC
GAGTTCCCCCCGCAGATGACCCTGTGCGATGCTCTGTCGGATTCGTCACG
CCCGCTCGACAGACGGGATTACATGTACAGCCCACGGTGGGATGCAGAGA
GAATGGCGACCGCTCTGTACGCGCACGCCGTTGAAGCGCTGTGGAACCCA
GCCTAG
back to top