mRNA_P-fluviatile_contig80.14713.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14713.1
Unique NamemRNA_P-fluviatile_contig80.14713.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:59346..59766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size421
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14713.1prot_P-fluviatile_contig80.14713.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 59354..59719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.7949815-UTR-P-fluviatile_contig80:59345..593531622817267.7949815-UTR-P-fluviatile_contig80:59345..59353Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 59346..59353 +
1693571848.3733118-UTR-P-fluviatile_contig80:59345..593531693571848.3733118-UTR-P-fluviatile_contig80:59345..59353Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 59346..59353 +
1622817267.8221745-UTR-P-fluviatile_contig80:59719..597661622817267.8221745-UTR-P-fluviatile_contig80:59719..59766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 59720..59766 +
1693571848.4030447-UTR-P-fluviatile_contig80:59719..597661693571848.4030447-UTR-P-fluviatile_contig80:59719..59766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 59720..59766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8087115-CDS-P-fluviatile_contig80:59353..597191622817267.8087115-CDS-P-fluviatile_contig80:59353..59719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 59354..59719 +
1693571848.3936932-CDS-P-fluviatile_contig80:59353..597191693571848.3936932-CDS-P-fluviatile_contig80:59353..59719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 59354..59719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14713.1

>prot_P-fluviatile_contig80.14713.1 ID=prot_P-fluviatile_contig80.14713.1|Name=mRNA_P-fluviatile_contig80.14713.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
MFLMVLTYVYKVCFECFPMCRPIYHMLRPSLFSALDVLCLCVALSRCVSV
AFHTVAVTEGARSELPSLCSLSIFCVAILGVFFSWCLDRSHDGCRNGVYL
ACCLFCVSRTEMLTDNNFNLV*
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mRNA from alignment at P-fluviatile_contig80:59346..59766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14713.1 ID=mRNA_P-fluviatile_contig80.14713.1|Name=mRNA_P-fluviatile_contig80.14713.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=421bp|location=Sequence derived from alignment at P-fluviatile_contig80:59346..59766+ (Porterinema fluviatile SAG_2381)
ACAGCGTCATGTTCCTCATGGTCCTCACCTACGTCTACAAGGTTTGTTTT
GAGTGTTTCCCCATGTGTCGCCCCATTTACCACATGTTGCGTCCGTCTTT
ATTTTCTGCTCTTGATGTGTTGTGTTTATGCGTGGCACTCTCCCGGTGTG
TATCTGTGGCTTTCCACACAGTTGCTGTTACTGAGGGTGCGCGATCCGAG
TTGCCCTCACTTTGTAGTTTGAGTATATTTTGCGTTGCAATACTTGGTGT
TTTTTTCTCGTGGTGCTTGGACCGTTCACATGACGGTTGTAGGAACGGGG
TCTATCTTGCGTGTTGTTTGTTTTGCGTGAGCCGCACCGAAATGCTCACA
GATAACAATTTTAATTTGGTCTGAGTCGTGATTCTGTTGCCGGGCCGCGA
AGAGCGAGGGAGAGCGGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:59346..59766+

>mRNA_P-fluviatile_contig80.14713.1 ID=mRNA_P-fluviatile_contig80.14713.1|Name=mRNA_P-fluviatile_contig80.14713.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig80:59346..59766+ (Porterinema fluviatile SAG_2381)
ATGTTCCTCATGGTCCTCACCTACGTCTACAAGGTTTGTTTTGAGTGTTT
CCCCATGTGTCGCCCCATTTACCACATGTTGCGTCCGTCTTTATTTTCTG
CTCTTGATGTGTTGTGTTTATGCGTGGCACTCTCCCGGTGTGTATCTGTG
GCTTTCCACACAGTTGCTGTTACTGAGGGTGCGCGATCCGAGTTGCCCTC
ACTTTGTAGTTTGAGTATATTTTGCGTTGCAATACTTGGTGTTTTTTTCT
CGTGGTGCTTGGACCGTTCACATGACGGTTGTAGGAACGGGGTCTATCTT
GCGTGTTGTTTGTTTTGCGTGAGCCGCACCGAAATGCTCACAGATAACAA
TTTTAATTTGGTCTGAATGTTCCTCATGGTCCTCACCTACGTCTACAAGG
TTTGTTTTGAGTGTTTCCCCATGTGTCGCCCCATTTACCACATGTTGCGT
CCGTCTTTATTTTCTGCTCTTGATGTGTTGTGTTTATGCGTGGCACTCTC
CCGGTGTGTATCTGTGGCTTTCCACACAGTTGCTGTTACTGAGGGTGCGC
GATCCGAGTTGCCCTCACTTTGTAGTTTGAGTATATTTTGCGTTGCAATA
CTTGGTGTTTTTTTCTCGTGGTGCTTGGACCGTTCACATGACGGTTGTAG
GAACGGGGTCTATCTTGCGTGTTGTTTGTTTTGCGTGAGCCGCACCGAAA
TGCTCACAGATAACAATTTTAATTTGGTCTGA
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